CSPI04G00150 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G00150
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	At3g19660
Location	Chr4 : 100855 .. 101842 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTCTATAAATGGAACCCCCTAACACCCTCTTCGCTGCTACTCAATAAAATCATAAACAACGCCCAATCTCTCTTCTCTATCTTTACCCTTCAATGGCCAATCAGCTCGGCAATTTAGTGGAATCCATTAAATCCAAGGTCAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTCTTGATCGATAAAACCATGAAAGTCGCCGATCGTCCTGGCAAACGTACAATTTCTTAGCCCAAACTCTCTCTCTCTCACTCACTCACTCACTCACTCAGGTCTTTTCTCTCTCTCTCTCTCTAATCTCATCTTCGCCTTCTCAAATCAATTGCGTCCAATCTTAGTTTTCCTTTCTTTTTTGTACCTTCCGATTCTGTGTGATACTCAGATCAGATCGGTTTAAATATTATTTTGGTCTACTCTTAGCTTTGATTCACTCTGTAATTTCAAACAGTTCATTTTGGTTATTGTAATTACTACTCCTTCCAAAATTATAAAAACCAAAATGAATATTCTGAAATAATATAGGAACAAAAAAAGAAAAGTGGTGTTTAAACCATCTAGATATGGAACCGTTTCGGAAACTTGTAATTAGTTATTATGAATCACACAGTATGAACTATTACCAATTTGTCTTTGTGTTCTATCTTGGAATCCGCTTACTTTCATTGCCTGATGGATTGATTTGAAATGAAGTGATGAGATGTGTTTTGGGGAAGGAAATTTGAATGAAATGAAGTGTGAGGAGTTTGTGATTGGTGAAATGAATTGCAATTAAGGAAGGACGAACGGCATGGACGGCGGGCCGCCCAATTACTACGCCACTCTCCATTCCTTCATAATTCATATTAAAGTATTCTCAAACTCAAACACACACATTATTTTATTACGCATTCTTTCATCTCCAAAGTCAATTAATTATTGAGCTCTAAAG

mRNA sequence

ATGGCCAATCAGCTCGGCAATTTAGTGGAATCCATTAAATCCAAGGTCAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTCTTGATCGATAAAACCATGAAAGTCGCCGATCGTCCTGGCAAACGTACAATTTCTTAG

Coding sequence (CDS)

ATGGCCAATCAGCTCGGCAATTTAGTGGAATCCATTAAATCCAAGGTCAAAGCATTGAAGAAATCCAAGAAGCCATATATCAAGATGGACAAAAGCTCCAGCGTTAAAGTTGAGATCCGTAGCCGAAAAGCTCGTTTCTTGATCGATAAAACCATGAAAGTCGCCGATCGTCCTGGCAAACGTACAATTTCTTAG

Homology

[Close]

BLAST of CSPI04G00150 vs. TrEMBL
Match: A0A0A0KT27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000640 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.7e-24
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CSPI04G00150 vs. TrEMBL
Match: E5GBH1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.2e-23
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CSPI04G00150 vs. TrEMBL
Match: A0A067L7Z7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16375 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.3e-20
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQL NLV+SIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLENLVQSIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKVADRPGK 60

Query: 61 RTIS 65
           +IS
Sbjct: 61 GSIS 64

[Close]

BLAST of CSPI04G00150 vs. TrEMBL
Match: A0A061E2D5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007255 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-19
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQL NLVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+K ADRPGK
Sbjct: 1  MANQLENLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKGADRPGK 60

Query: 61 RTI 64
          R+I
Sbjct: 61 RSI 63

[Close]

BLAST of CSPI04G00150 vs. TrEMBL
Match: F6HBL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00270 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-19
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MA QL NLVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKA+ LIDKTM+ ADRPGK
Sbjct: 1  MAIQLENLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKAKKLIDKTMRAADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CSPI04G00150 vs. TAIR10
Match: AT3G19660.1 (AT3G19660.1 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 4.2e-16
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          M  QL +L+E+IKSKV  L+K KK YIKMDKSSSV+V IR +K R LIDKT+KVADRPGK
Sbjct: 1  MGLQLESLMETIKSKVSLLRKKKKTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGK 60

Query: 61 RTI 64
          RT+
Sbjct: 61 RTL 63

[Close]

BLAST of CSPI04G00150 vs. NCBI nr
Match: gi|449465089|ref|XP_004150261.1| (PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 6.8e-24
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CSPI04G00150 vs. NCBI nr
Match: gi|659108841|ref|XP_008454414.1| (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 7.5e-23
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

[Close]

BLAST of CSPI04G00150 vs. NCBI nr
Match: gi|802550774|ref|XP_012093162.1| (PREDICTED: uncharacterized protein LOC105650814 [Jatropha curcas])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQL NLV+SIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLENLVQSIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKVADRPGK 60

Query: 61 RTIS 65
           +IS
Sbjct: 61 GSIS 64

[Close]

BLAST of CSPI04G00150 vs. NCBI nr
Match: gi|590687494|ref|XP_007042680.1| (Uncharacterized protein TCM_007255 [Theobroma cacao])

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-19
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MANQL NLVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+K ADRPGK
Sbjct: 1  MANQLENLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKGADRPGK 60

Query: 61 RTI 64
          R+I
Sbjct: 61 RSI 63

[Close]

BLAST of CSPI04G00150 vs. NCBI nr
Match: gi|225429205|ref|XP_002276348.1| (PREDICTED: uncharacterized protein LOC100258330 [Vitis vinifera])

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-19
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60
          MA QL NLVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKA+ LIDKTM+ ADRPGK
Sbjct: 1  MAIQLENLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKAKKLIDKTMRAADRPGK 60

Query: 61 RTIS 65
          RTIS
Sbjct: 61 RTIS 64

The following BLAST results are available for this feature:

BLAST of CSPI04G00150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G00150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT27_CUCSA	4.7e-24	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000640 PE=4 SV=1	[more]
E5GBH1_CUCME	5.2e-23	96.88	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A067L7Z7_JATCU	9.3e-20	89.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16375 PE=4 SV=1	[more]
A0A061E2D5_THECC	1.6e-19	90.48	Uncharacterized protein OS=Theobroma cacao GN=TCM_007255 PE=4 SV=1	[more]
F6HBL7_VITVI	1.6e-19	89.06	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00270 PE=4 SV=...	[more]

BLAST of CSPI04G00150 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19660.1	4.2e-16	69.84	unknown protein	[more]

BLAST of CSPI04G00150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465089\|ref\|XP_004150261.1\|	6.8e-24	100.00	PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus]	[more]
gi\|659108841\|ref\|XP_008454414.1\|	7.5e-23	96.88	PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo]	[more]
gi\|802550774\|ref\|XP_012093162.1\|	1.3e-19	89.06	PREDICTED: uncharacterized protein LOC105650814 [Jatropha curcas]	[more]
gi\|590687494\|ref\|XP_007042680.1\|	2.3e-19	90.48	Uncharacterized protein TCM_007255 [Theobroma cacao]	[more]
gi\|225429205\|ref\|XP_002276348.1\|	2.3e-19	89.06	PREDICTED: uncharacterized protein LOC100258330 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G00150.1	CSPI04G00150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563	FAMILY NOT NAMED	coord: 1..64 score: 2.9
None	No IPR available	PANTHER	PTHR34563:SF2	SUBFAMILY NOT NAMED	coord: 1..64 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G00150	Cla006450	Watermelon (97103) v1	cpiwmB291
CSPI04G00150	Csa4G000640	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G00150	MELO3C018020	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G00150	ClCG10G010080	Watermelon (Charleston Gray)	cpiwcgB280
CSPI04G00150	MELO3C018020.2	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G00150	CsaV3_4G000120	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G00150	Bhi11G000919	Wax gourd	cpiwgoB358
CSPI04G00150	Cucsa.298440	Cucumber (Gy14) v1	cgycpiB447
CSPI04G00150	CmaCh16G003090	Cucurbita maxima (Rimu)	cmacpiB338
CSPI04G00150	CmoCh16G003280	Cucurbita moschata (Rifu)	cmocpiB329
CSPI04G00150	CmoCh04G004680	Cucurbita moschata (Rifu)	cmocpiB709
CSPI04G00150	Cp4.1LG14g04570	Cucurbita pepo (Zucchini)	cpecpiB221
CSPI04G00150	Cp4.1LG01g02800	Cucurbita pepo (Zucchini)	cpecpiB399
CSPI04G00150	CsGy4G000160	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G00150	Carg08111	Silver-seed gourd	carcpiB0407
CSPI04G00150	Carg19697	Silver-seed gourd	carcpiB0328

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G00150	Cucumber (Chinese Long) v3	cpicucB224
CSPI04G00150	Watermelon (97103) v2	cpiwmbB278
CSPI04G00150	Watermelon (97103) v2	cpiwmbB296
CSPI04G00150	Wild cucumber (PI 183967)	cpicpiB151
CSPI04G00150	Wild cucumber (PI 183967)	cpicpiB169
CSPI04G00150	Cucumber (Gy14) v1	cgycpiB522
CSPI04G00150	Cucurbita maxima (Rimu)	cmacpiB715
CSPI04G00150	Cucumber (Chinese Long) v2	cpicuB188
CSPI04G00150	Cucumber (Chinese Long) v2	cpicuB207
CSPI04G00150	Melon (DHL92) v3.5.1	cpimeB276
CSPI04G00150	Melon (DHL92) v3.5.1	cpimeB309
CSPI04G00150	Bottle gourd (USVL1VR-Ls)	cpilsiB274
CSPI04G00150	Cucumber (Gy14) v2	cgybcpiB179