Carg19697 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19697
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glucose-repressible alcohol dehydrogenase transcriptional effector like
Location	Cucurbita_argyrosperma_scaffold_133 : 218946 .. 219140 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCAGTTCGGCAGTTTAGTGGAATCCATAAAATCCAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCGTATATAAAGATGGACAAAAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAAGCTCGATTGTTGATCGATAAAACTATGAAGGTCGCCGATCGTCCTGGCAAGCGCACTGTTTCTTAG

mRNA sequence

ATGGCGAATCAGTTCGGCAGTTTAGTGGAATCCATAAAATCCAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCGTATATAAAGATGGACAAAAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAAGCTCGATTGTTGATCGATAAAACTATGAAGGTCGCCGATCGTCCTGGCAAGCGCACTGTTTCTTAG

Coding sequence (CDS)

ATGGCGAATCAGTTCGGCAGTTTAGTGGAATCCATAAAATCCAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCGTATATAAAGATGGACAAAAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAAGCTCGATTGTTGATCGATAAAACTATGAAGGTCGCCGATCGTCCTGGCAAGCGCACTGTTTCTTAG

Protein sequence

MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGKRTVS

Homology

[Close]

BLAST of Carg19697 vs. NCBI nr
Match: XP_022922964.1 (uncharacterized protein LOC111430789 [Cucurbita moschata] >XP_023553058.1 uncharacterized protein LOC111810569 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.9 bits (289), Expect = 4.9e-23
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK
Sbjct: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60

Query: 61 RTVS 65
          RTVS
Sbjct: 61 RTVS 64

[Close]

BLAST of Carg19697 vs. NCBI nr
Match: XP_022984885.1 (uncharacterized protein LOC111483028 [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRK+RLLIDKTMKVADRPGK
Sbjct: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60

Query: 61 RTVS 65
          RTVS
Sbjct: 61 RTVS 64

[Close]

BLAST of Carg19697 vs. NCBI nr
Match: XP_008454414.1 (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of Carg19697 vs. NCBI nr
Match: XP_004150261.1 (PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hypothetical protein Csa_4G000640 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-21
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of Carg19697 vs. NCBI nr
Match: XP_022149139.1 (uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncharacterized protein LOC111017632 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-21
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPY+KMDKSSSVKVEIRSRKARLLIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of Carg19697 vs. TAIR10
Match: AT3G19660.1 (unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-15
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          M  Q  SL+E+IKSKV  L+K KK YIKMDKSSSV+V IR +K R LIDKT+KVADRPGK
Sbjct: 1  MGLQLESLMETIKSKVSLLRKKKKTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGK 60

Query: 61 RTV 64
          RT+
Sbjct: 61 RTL 63

[Close]

BLAST of Carg19697 vs. TrEMBL
Match: tr|A0A1S3BZS5|A0A1S3BZS5_CUCME (uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of Carg19697 vs. TrEMBL
Match: tr|E5GBH1|E5GBH1_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of Carg19697 vs. TrEMBL
Match: tr|A0A0A0KT27|A0A0A0KT27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of Carg19697 vs. TrEMBL
Match: tr|A0A2C9V4E8|A0A2C9V4E8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G086400 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ  +LVESIKSKV+ALKKSKKPY+KMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLENLVESIKSKVRALKKSKKPYVKMDKSSSVKVEIRSRKARKLIDKTLKVADRPGK 60

Query: 61 RTVS 65
          R++S
Sbjct: 61 RSIS 64

[Close]

BLAST of Carg19697 vs. TrEMBL
Match: tr|A0A2C9VLA0|A0A2C9VLA0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G057600 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ  +L++SIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLENLMQSIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARQLIDKTLKVADRPGK 60

Query: 61 RTVS 65
          R+VS
Sbjct: 61 RSVS 64

The following BLAST results are available for this feature:

BLAST of Carg19697 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922964.1	4.9e-23	100.00	uncharacterized protein LOC111430789 [Cucurbita moschata] >XP_023553058.1 unchar...	[more]
XP_022984885.1	1.1e-22	98.44	uncharacterized protein LOC111483028 [Cucurbita maxima]	[more]
XP_008454414.1	1.6e-21	93.75	PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypot...	[more]
XP_004150261.1	2.1e-21	93.75	PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hy...	[more]
XP_022149139.1	2.1e-21	92.19	uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncha...	[more]

BLAST of Carg19697 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19660.1	2.1e-15	69.84	unknown protein	[more]

BLAST of Carg19697 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19697 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZS5\|A0A1S3BZS5_CUCME	1.1e-21	93.75	uncharacterized protein LOC103494825 OS=Cucumis melo OX=3656 GN=LOC103494825 PE=...	[more]
tr\|E5GBH1\|E5GBH1_CUCME	1.1e-21	93.75	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0KT27\|A0A0A0KT27_CUCSA	1.4e-21	93.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000640 PE=4 SV=1	[more]
tr\|A0A2C9V4E8\|A0A2C9V4E8_MANES	3.7e-19	85.94	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G086400 PE=4 SV=...	[more]
tr\|A0A2C9VLA0\|A0A2C9VLA0_MANES	1.1e-18	85.94	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G057600 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19697-RA	Carg19697-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563	FAMILY NOT NAMED	coord: 1..64
None	No IPR available	PANTHER	PTHR34563:SF2	SUBFAMILY NOT NAMED	coord: 1..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19697	Cla006450	Watermelon (97103) v1	carwmB0287
Carg19697	Csa4G000640	Cucumber (Chinese Long) v2	carcuB0322
Carg19697	MELO3C018020	Melon (DHL92) v3.5.1	carmeB0297
Carg19697	ClCG10G010080	Watermelon (Charleston Gray)	carwcgB0287
Carg19697	CSPI04G00150	Wild cucumber (PI 183967)	carcpiB0328
Carg19697	Cucsa.298440	Cucumber (Gy14) v1	carcgyB0346
Carg19697	CmaCh16G003090	Cucurbita maxima (Rimu)	carcmaB0406
Carg19697	CmoCh04G004680	Cucurbita moschata (Rifu)	carcmoB0403
Carg19697	CmoCh16G003280	Cucurbita moschata (Rifu)	carcmoB0402
Carg19697	Cp4.1LG14g04570	Cucurbita pepo (Zucchini)	carcpeB0407
Carg19697	Cp4.1LG01g02800	Cucurbita pepo (Zucchini)	carcpeB0408
Carg19697	CsGy4G000160	Cucumber (Gy14) v2	carcgybB0309
Carg19697	MELO3C018020.2	Melon (DHL92) v3.6.1	carmedB0308
Carg19697	CsaV3_4G000120	Cucumber (Chinese Long) v3	carcucB0328
Carg19697	Bhi11G000919	Wax gourd	carwgoB0381

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19697	Carg08111	Silver-seed gourd	carcarB324

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19697	Watermelon (97103) v2	carwmbB0303
Carg19697	Watermelon (97103) v2	carwmbB0302
Carg19697	Cucumber (Gy14) v1	carcgyB0344
Carg19697	Cucurbita maxima (Rimu)	carcmaB0405
Carg19697	Cucurbita maxima (Rimu)	carcmaB0407
Carg19697	Cucurbita maxima (Rimu)	carcmaB0408
Carg19697	Cucurbita moschata (Rifu)	carcmoB0401
Carg19697	Cucurbita pepo (Zucchini)	carcpeB0409
Carg19697	Wild cucumber (PI 183967)	carcpiB0329
Carg19697	Cucumber (Chinese Long) v2	carcuB0323
Carg19697	Cucumber (Chinese Long) v3	carcucB0329
Carg19697	Bottle gourd (USVL1VR-Ls)	carlsiB269
Carg19697	Melon (DHL92) v3.5.1	carmeB0295
Carg19697	Melon (DHL92) v3.6.1	carmedB0306
Carg19697	Watermelon (Charleston Gray)	carwcgB0288