CmoCh16G003280 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G003280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(BnaAnng21980D protein) (BnaAnng21990D protein) (BnaCnng33890D protein)
Location	Cmo_Chr16 : 1494621 .. 1494932 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCAGTTCGGCAGTTTAGTGGAATCCATAAAATCGAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCGTATATAAAGATGGACAAAAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAAGCTCGATTGTTGATCGATAAAACTATGAAGGTCGCCGATCGTCCTGGCAAGCGCACTGTTTCTTAGTCCTGATTATCATCTCTGTTTCTTAACGACACAGGTTTTTTTATGCTCTCTCGCTATTTTTCTCTGTGATCTTCGCGTAGTTGCAATCGCGGAATGTTCTTGTTTGTGATGATTTAG

mRNA sequence

ATGGCGAATCAGTTCGGCAGTTTAGTGGAATCCATAAAATCGAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCGTATATAAAGATGGACAAAAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAAGCTCGATTGTTGATCGATAAAACTATGAAGGTCGCCGATCGTCCTGGCAAGCGCACTGTTTCTTATTGCAATCGCGGAATGTTCTTGTTTGTGATGATTTAG

Coding sequence (CDS)

ATGGCGAATCAGTTCGGCAGTTTAGTGGAATCCATAAAATCGAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCGTATATAAAGATGGACAAAAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAAGCTCGATTGTTGATCGATAAAACTATGAAGGTCGCCGATCGTCCTGGCAAGCGCACTGTTTCTTATTGCAATCGCGGAATGTTCTTGTTTGTGATGATTTAG

Homology

[Close]

BLAST of CmoCh16G003280 vs. TrEMBL
Match: E5GBH1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-22
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of CmoCh16G003280 vs. TrEMBL
Match: A0A0A0KT27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000640 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-22
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of CmoCh16G003280 vs. TrEMBL
Match: A0A067L7Z7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16375 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ  +LV+SIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLENLVQSIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKVADRPGK 60

Query: 61 RTVS 65
           ++S
Sbjct: 61 GSIS 64

[Close]

BLAST of CmoCh16G003280 vs. TrEMBL
Match: A0A061E2D5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007255 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-18
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ  +LVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+K ADRPGK
Sbjct: 1  MANQLENLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKGADRPGK 60

Query: 61 RTV 64
          R++
Sbjct: 61 RSI 63

[Close]

BLAST of CmoCh16G003280 vs. TrEMBL
Match: F6HBL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00270 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-18
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MA Q  +LVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKA+ LIDKTM+ ADRPGK
Sbjct: 1  MAIQLENLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKAKKLIDKTMRAADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of CmoCh16G003280 vs. TAIR10
Match: AT3G19660.1 (AT3G19660.1 unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-15
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          M  Q  SL+E+IKSKV  L+K KK YIKMDKSSSV+V IR +K R LIDKT+KVADRPGK
Sbjct: 1  MGLQLESLMETIKSKVSLLRKKKKTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGK 60

Query: 61 RTV 64
          RT+
Sbjct: 61 RTL 63

[Close]

BLAST of CmoCh16G003280 vs. NCBI nr
Match: gi|659108841|ref|XP_008454414.1| (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of CmoCh16G003280 vs. NCBI nr
Match: gi|449465089|ref|XP_004150261.1| (PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-22
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of CmoCh16G003280 vs. NCBI nr
Match: gi|802550774|ref|XP_012093162.1| (PREDICTED: uncharacterized protein LOC105650814 [Jatropha curcas])

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-18
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ  +LV+SIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLENLVQSIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKVADRPGK 60

Query: 61 RTVS 65
           ++S
Sbjct: 61 GSIS 64

[Close]

BLAST of CmoCh16G003280 vs. NCBI nr
Match: gi|225429205|ref|XP_002276348.1| (PREDICTED: uncharacterized protein LOC100258330 [Vitis vinifera])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MA Q  +LVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKA+ LIDKTM+ ADRPGK
Sbjct: 1  MAIQLENLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKAKKLIDKTMRAADRPGK 60

Query: 61 RTVS 65
          RT+S
Sbjct: 61 RTIS 64

[Close]

BLAST of CmoCh16G003280 vs. NCBI nr
Match: gi|590687494|ref|XP_007042680.1| (Uncharacterized protein TCM_007255 [Theobroma cacao])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60
          MANQ  +LVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+K ADRPGK
Sbjct: 1  MANQLENLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKGADRPGK 60

Query: 61 RTV 64
          R++
Sbjct: 61 RSI 63

The following BLAST results are available for this feature:

BLAST of CmoCh16G003280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G003280 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBH1_CUCME	3.0e-22	93.75	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KT27_CUCSA	4.0e-22	93.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000640 PE=4 SV=1	[more]
A0A067L7Z7_JATCU	1.2e-18	84.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16375 PE=4 SV=1	[more]
A0A061E2D5_THECC	2.0e-18	85.71	Uncharacterized protein OS=Theobroma cacao GN=TCM_007255 PE=4 SV=1	[more]
F6HBL7_VITVI	2.0e-18	84.38	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00270 PE=4 SV=...	[more]

BLAST of CmoCh16G003280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19660.1	1.1e-15	69.84	unknown protein	[more]

BLAST of CmoCh16G003280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108841\|ref\|XP_008454414.1\|	4.4e-22	93.75	PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo]	[more]
gi\|449465089\|ref\|XP_004150261.1\|	5.7e-22	93.75	PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus]	[more]
gi\|802550774\|ref\|XP_012093162.1\|	1.7e-18	84.38	PREDICTED: uncharacterized protein LOC105650814 [Jatropha curcas]	[more]
gi\|225429205\|ref\|XP_002276348.1\|	2.9e-18	84.38	PREDICTED: uncharacterized protein LOC100258330 [Vitis vinifera]	[more]
gi\|590687494\|ref\|XP_007042680.1\|	2.9e-18	85.71	Uncharacterized protein TCM_007255 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G003280.1	CmoCh16G003280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563	FAMILY NOT NAMED	coord: 1..68 score: 2.2
None	No IPR available	PANTHER	PTHR34563:SF2	SUBFAMILY NOT NAMED	coord: 1..68 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G003280	Cucsa.298440	Cucumber (Gy14) v1	cgycmoB0818
CmoCh16G003280	CmaCh16G003090	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G003280	Cla006450	Watermelon (97103) v1	cmowmB287
CmoCh16G003280	Csa4G000640	Cucumber (Chinese Long) v2	cmocuB322
CmoCh16G003280	MELO3C018020	Melon (DHL92) v3.5.1	cmomeB298
CmoCh16G003280	ClCG10G010080	Watermelon (Charleston Gray)	cmowcgB273
CmoCh16G003280	CSPI04G00150	Wild cucumber (PI 183967)	cmocpiB329
CmoCh16G003280	Cp4.1LG14g04570	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G003280	Cp4.1LG01g02800	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G003280	MELO3C018020.2	Melon (DHL92) v3.6.1	cmomedB342
CmoCh16G003280	CsaV3_4G000120	Cucumber (Chinese Long) v3	cmocucB0385
CmoCh16G003280	Bhi11G000919	Wax gourd	cmowgoB0405
CmoCh16G003280	CsGy4G000160	Cucumber (Gy14) v2	cgybcmoB465
CmoCh16G003280	Carg08111	Silver-seed gourd	carcmoB0509
CmoCh16G003280	Carg19697	Silver-seed gourd	carcmoB0402

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G003280	CmoCh04G004680	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G003280	Cucumber (Chinese Long) v3	cmocucB0409
CmoCh16G003280	Watermelon (97103) v2	cmowmbB316
CmoCh16G003280	Cucurbita moschata (Rifu)	cmocmoB096
CmoCh16G003280	Cucumber (Gy14) v1	cgycmoB0625
CmoCh16G003280	Cucurbita maxima (Rimu)	cmacmoB133
CmoCh16G003280	Cucurbita maxima (Rimu)	cmacmoB502
CmoCh16G003280	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G003280	Wild cucumber (PI 183967)	cmocpiB344
CmoCh16G003280	Cucumber (Chinese Long) v2	cmocuB338
CmoCh16G003280	Melon (DHL92) v3.5.1	cmomeB280
CmoCh16G003280	Cucurbita pepo (Zucchini)	cmocpeB321
CmoCh16G003280	Bottle gourd (USVL1VR-Ls)	cmolsiB294
CmoCh16G003280	Melon (DHL92) v3.6.1	cmomedB317