CmaCh16G003090 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G003090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_1162
LocationCma_Chr16 : 1435240 .. 1435626 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATCAGTTCGGCAGTTTAGTGGAATCCATAAAATCCAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCGTATATAAAGATGGACAAAAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAATCTCGATTGTTGATCGATAAAACTATGAAGGTCGCCGATCGTCCTGGCAAGCGCACTGTTTCTTAGTCTTGATTATCATCTCGGTTTCTTACCGACACCAGGTTTTTTTTATGCTCTCTCGCTATTTTTCTCTGTGATCTTCGCGTAGTTGCAATCGCGGAATGTTCTTTTTTTTGATGATTTAGTTTTGGTTTGATCGTGTAGCTACCGATTCTGTGTTTCTCTCATAGATTCAGACATGGAACCGTTTCGGATTAA

mRNA sequence

ATGGCGAATCAGTTCGGCAGTTTAGTGGAATCCATAAAATCCAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCGTATATAAAGATGGACAAAAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAATCTCGATTGTTGATCGATAAAACTATGAAGGTCGCCGATCGTCCTGGCAAGCGCACTCTACCGATTCTGTGTTTCTCTCATAGATTCAGACATGGAACCGTTTCGGATTAA

Coding sequence (CDS)

ATGGCGAATCAGTTCGGCAGTTTAGTGGAATCCATAAAATCCAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCGTATATAAAGATGGACAAAAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAATCTCGATTGTTGATCGATAAAACTATGAAGGTCGCCGATCGTCCTGGCAAGCGCACTCTACCGATTCTGTGTTTCTCTCATAGATTCAGACATGGAACCGTTTCGGATTAA

Protein sequence

MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGKRTLPILCFSHRFRHGTVSD
Homology
[Close]
BLAST of CmaCh16G003090 vs. TrEMBL
Match: E5GBH1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.6e-21
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRK+RLLIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTL 64
          RT+
Sbjct: 61 RTI 63

[Close]
BLAST of CmaCh16G003090 vs. TrEMBL
Match: A0A0A0KT27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000640 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.0e-21
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRK+R LIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTL 64
          RT+
Sbjct: 61 RTI 63

[Close]
BLAST of CmaCh16G003090 vs. TrEMBL
Match: A0A061E2D5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007255 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.1e-18
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          MANQ  +LVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRK+R LIDKT+K ADRPGK
Sbjct: 1  MANQLENLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKGADRPGK 60

Query: 61 RTL 64
          R++
Sbjct: 61 RSI 63

[Close]
BLAST of CmaCh16G003090 vs. TrEMBL
Match: S8D0A5_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_01559 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          MAN  GSLVESIKSKV++LKKSKKPY+KMDKS+SVKVEIRSRK+R LIDKT+K ADRPGK
Sbjct: 1  MANHLGSLVESIKSKVRSLKKSKKPYVKMDKSASVKVEIRSRKARQLIDKTLKAADRPGK 60

Query: 61 RTL 64
          + L
Sbjct: 61 KQL 63

[Close]
BLAST of CmaCh16G003090 vs. TrEMBL
Match: A0A067L7Z7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16375 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-17
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          MANQ  +LV+SIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRK+R LIDKT+KVADRPGK
Sbjct: 1  MANQLENLVQSIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKVADRPGK 60

Query: 61 RTL 64
           ++
Sbjct: 61 GSI 63

[Close]
BLAST of CmaCh16G003090 vs. TAIR10
Match: AT3G19660.1 (AT3G19660.1 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 5.2e-16
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          M  Q  SL+E+IKSKV  L+K KK YIKMDKSSSV+V IR +K+R LIDKT+KVADRPGK
Sbjct: 1  MGLQLESLMETIKSKVSLLRKKKKTYIKMDKSSSVRVAIRRKKTRDLIDKTLKVADRPGK 60

Query: 61 RTL 64
          RTL
Sbjct: 61 RTL 63

[Close]
BLAST of CmaCh16G003090 vs. NCBI nr
Match: gi|659108841|ref|XP_008454414.1| (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 6.5e-21
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRK+RLLIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 RTL 64
          RT+
Sbjct: 61 RTI 63

[Close]
BLAST of CmaCh16G003090 vs. NCBI nr
Match: gi|449465089|ref|XP_004150261.1| (PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 8.6e-21
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRK+R LIDKTMKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 RTL 64
          RT+
Sbjct: 61 RTI 63

[Close]
BLAST of CmaCh16G003090 vs. NCBI nr
Match: gi|694431520|ref|XP_009343176.1| (PREDICTED: uncharacterized protein LOC103935145 [Pyrus x bretschneideri])

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-18
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          M NQ  SLVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRS+K+R LIDKT+K ADRPGK
Sbjct: 1  MTNQLESLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSKKARKLIDKTLKAADRPGK 60

Query: 61 RTLP 65
          R +P
Sbjct: 61 RPIP 64

[Close]
BLAST of CmaCh16G003090 vs. NCBI nr
Match: gi|590687494|ref|XP_007042680.1| (Uncharacterized protein TCM_007255 [Theobroma cacao])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          MANQ  +LVESIKSKV+ALKKSKKPYIKMDKSSSVKVEIRSRK+R LIDKT+K ADRPGK
Sbjct: 1  MANQLENLVESIKSKVRALKKSKKPYIKMDKSSSVKVEIRSRKARKLIDKTLKGADRPGK 60

Query: 61 RTL 64
          R++
Sbjct: 61 RSI 63

[Close]
BLAST of CmaCh16G003090 vs. NCBI nr
Match: gi|527208129|gb|EPS73204.1| (hypothetical protein M569_01559 [Genlisea aurea])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 1 

Query: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKSRLLIDKTMKVADRPGK 60
          MAN  GSLVESIKSKV++LKKSKKPY+KMDKS+SVKVEIRSRK+R LIDKT+K ADRPGK
Sbjct: 1  MANHLGSLVESIKSKVRSLKKSKKPYVKMDKSASVKVEIRSRKARQLIDKTLKAADRPGK 60

Query: 61 RTL 64
          + L
Sbjct: 61 KQL 63

The following BLAST results are available for this feature:
BLAST of CmaCh16G003090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G003090 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBH1_CUCME4.6e-2192.06Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KT27_CUCSA6.0e-2192.06Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000640 PE=4 SV=1[more]
A0A061E2D5_THECC8.1e-1884.13Uncharacterized protein OS=Theobroma cacao GN=TCM_007255 PE=4 SV=1[more]
S8D0A5_9LAMI1.1e-1780.95Uncharacterized protein OS=Genlisea aurea GN=M569_01559 PE=4 SV=1[more]
A0A067L7Z7_JATCU1.8e-1782.54Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16375 PE=4 SV=1[more]
BLAST of CmaCh16G003090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19660.15.2e-1671.43 unknown protein[more]
BLAST of CmaCh16G003090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108841|ref|XP_008454414.1|6.5e-2192.06PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo][more]
gi|449465089|ref|XP_004150261.1|8.6e-2192.06PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus][more]
gi|694431520|ref|XP_009343176.1|4.0e-1882.81PREDICTED: uncharacterized protein LOC103935145 [Pyrus x bretschneideri][more]
gi|590687494|ref|XP_007042680.1|1.2e-1784.13Uncharacterized protein TCM_007255 [Theobroma cacao][more]
gi|527208129|gb|EPS73204.1|1.5e-1780.95hypothetical protein M569_01559 [Genlisea aurea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G003090.1CmaCh16G003090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34563FAMILY NOT NAMEDcoord: 1..68
score: 1.8
NoneNo IPR availablePANTHERPTHR34563:SF2SUBFAMILY NOT NAMEDcoord: 1..68
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G003090Cucsa.298440Cucumber (Gy14) v1cgycmaB0824
CmaCh16G003090Cla006450Watermelon (97103) v1cmawmB293
CmaCh16G003090Csa4G000640Cucumber (Chinese Long) v2cmacuB333
CmaCh16G003090MELO3C018020Melon (DHL92) v3.5.1cmameB303
CmaCh16G003090ClCG10G010080Watermelon (Charleston Gray)cmawcgB280
CmaCh16G003090CSPI04G00150Wild cucumber (PI 183967)cmacpiB338
CmaCh16G003090CmoCh04G004680Cucurbita moschata (Rifu)cmacmoB338
CmaCh16G003090CmoCh16G003280Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G003090Cp4.1LG14g04570Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G003090Cp4.1LG01g02800Cucurbita pepo (Zucchini)cmacpeB351
CmaCh16G003090MELO3C018020.2Melon (DHL92) v3.6.1cmamedB354
CmaCh16G003090CsaV3_4G000120Cucumber (Chinese Long) v3cmacucB0388
CmaCh16G003090Bhi11G000919Wax gourdcmawgoB0410
CmaCh16G003090CsGy4G000160Cucumber (Gy14) v2cgybcmaB494
CmaCh16G003090Carg08111Silver-seed gourdcarcmaB0526
CmaCh16G003090Carg19697Silver-seed gourdcarcmaB0406
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G003090Cucurbita moschata (Rifu)cmacmoB318
CmaCh16G003090Wild cucumber (PI 183967)cmacpiB351
CmaCh16G003090Cucumber (Chinese Long) v2cmacuB348
CmaCh16G003090Melon (DHL92) v3.5.1cmameB287
CmaCh16G003090Watermelon (Charleston Gray)cmawcgB293
CmaCh16G003090Bottle gourd (USVL1VR-Ls)cmalsiB307
CmaCh16G003090Melon (DHL92) v3.6.1cmamedB331
CmaCh16G003090Cucumber (Chinese Long) v3cmacucB0414
CmaCh16G003090Watermelon (97103) v2cmawmbB332
CmaCh16G003090Watermelon (97103) v2cmawmbB342
CmaCh16G003090Cucurbita maxima (Rimu)cmacmaB135
CmaCh16G003090Cucurbita maxima (Rimu)cmacmaB340
CmaCh16G003090Cucurbita maxima (Rimu)cmacmaB351
CmaCh16G003090Cucumber (Gy14) v1cgycmaB0623