CmaCh04G004380 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G004380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 2236896 .. 2237376 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAGAATTTTGAGAAGGCCTTAAGAATCCGACGGAAACAACGAATAACCGTTGAAAGTGCGCCGTGGCCAGTGAATGGTAAACCTGTAATTTTAGCGTGAAACAAGGTCACTTGTTTACATTCATAAAATGGTGCACTACATGCGTACGTGTTTCTTCTATATATATGGAAGCTCTTCGCCACTGACAGAGTCCAAGACTCGGAAGCCATTCAATCTCACACCTCTTTCAACATAATTCCCCTTCATTTTCTTCTTCTTCCCTTCTTTGAAACCCTAATTCTGCAAAATTCCTGTTTCGATTCCCCTTCATTTGGAGATTTCAGCGGCTTCAATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATTGACAAGAGCGCGAACGTCAAGATTGAAATCCGTAGCCGAAAAGCTTGA

mRNA sequence

ATGTTGAAGAATTTTGAGAAGGCCTTAAGAATCCGACGGAAACAACGAATAACCGTTGAAAGTGCGCCGTGGCCAGTGAATGCGGCTTCAATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATTGACAAGAGCGCGAACGTCAAGATTGAAATCCGTAGCCGAAAAGCTTGA

Coding sequence (CDS)

ATGTTGAAGAATTTTGAGAAGGCCTTAAGAATCCGACGGAAACAACGAATAACCGTTGAAAGTGCGCCGTGGCCAGTGAATGCGGCTTCAATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATTGACAAGAGCGCGAACGTCAAGATTGAAATCCGTAGCCGAAAAGCTTGA

Protein sequence

MLKNFEKALRIRRKQRITVESAPWPVNAASMANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA
Homology
[Close]
BLAST of CmaCh04G004380 vs. TrEMBL
Match: G7K0Z0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g005330 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-10
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKVK+  K KK KKPYIK+DKSA+VK+EIRSRKA
Sbjct: 1  MANQLGNLVESIKSKVKSTLKMKKGKKPYIKMDKSASVKVEIRSRKA 47

[Close]
BLAST of CmaCh04G004380 vs. TrEMBL
Match: A0A0A0KT27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000640 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKVKAL   KKSKKPYIK+DKS++VK+EIRSRKA
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKA 44

[Close]
BLAST of CmaCh04G004380 vs. TrEMBL
Match: E5GBH1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKVKAL   KKSKKPYIK+DKS++VK+EIRSRKA
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKA 44

[Close]
BLAST of CmaCh04G004380 vs. TrEMBL
Match: A0A0J8EDH7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g222770 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-08
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 

Query: 31 MANQLGNLVESIKSKVKALRKSKK--SKKPYIKIDKSANVKIEIRSRK 77
          MANQLGNLVE+IKSKV AL+  KK  SKKPY+K+DKSA+VK+EIRSRK
Sbjct: 1  MANQLGNLVETIKSKVNALKNKKKKSSKKPYMKMDKSASVKVEIRSRK 48

[Close]
BLAST of CmaCh04G004380 vs. TrEMBL
Match: A0A0D2V9H6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G051400 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-08
Identity = 36/47 (76.60%), Postives = 45/47 (95.74%), Query Frame = 1 

Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLG+L+ESIKSKV+A++KSK +K PYIK+DKSA+VK+EIRSRKA
Sbjct: 1  MANQLGSLMESIKSKVRAMKKSKPNK-PYIKMDKSASVKVEIRSRKA 46

[Close]
BLAST of CmaCh04G004380 vs. NCBI nr
Match: gi|357480709|ref|XP_003610640.1| (hypothetical protein MTR_5g005330 [Medicago truncatula])

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-10
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKVK+  K KK KKPYIK+DKSA+VK+EIRSRKA
Sbjct: 1  MANQLGNLVESIKSKVKSTLKMKKGKKPYIKMDKSASVKVEIRSRKA 47

[Close]
BLAST of CmaCh04G004380 vs. NCBI nr
Match: gi|659108841|ref|XP_008454414.1| (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKVKAL   KKSKKPYIK+DKS++VK+EIRSRKA
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKA 44

[Close]
BLAST of CmaCh04G004380 vs. NCBI nr
Match: gi|449465089|ref|XP_004150261.1| (PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKVKAL   KKSKKPYIK+DKS++VK+EIRSRKA
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKA 44

[Close]
BLAST of CmaCh04G004380 vs. NCBI nr
Match: gi|502158909|ref|XP_004511322.1| (PREDICTED: uncharacterized protein LOC101498896 [Cicer arietinum])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQ GNLVESIKSKVK+L K KK KKPY+K+DKSA+VK+EIRSRKA
Sbjct: 1  MANQFGNLVESIKSKVKSL-KMKKPKKPYMKMDKSASVKVEIRSRKA 46

[Close]
BLAST of CmaCh04G004380 vs. NCBI nr
Match: gi|870848727|gb|KMT01016.1| (hypothetical protein BVRB_9g222770 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1 

Query: 31 MANQLGNLVESIKSKVKALRKSKK--SKKPYIKIDKSANVKIEIRSRK 77
          MANQLGNLVE+IKSKV AL+  KK  SKKPY+K+DKSA+VK+EIRSRK
Sbjct: 1  MANQLGNLVETIKSKVNALKNKKKKSSKKPYMKMDKSASVKVEIRSRK 48

The following BLAST results are available for this feature:
BLAST of CmaCh04G004380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G004380 vs. TrEMBL
Match NameE-valueIdentityDescription
G7K0Z0_MEDTR4.6e-1082.98Uncharacterized protein OS=Medicago truncatula GN=MTR_5g005330 PE=4 SV=1[more]
A0A0A0KT27_CUCSA1.8e-0985.11Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000640 PE=4 SV=1[more]
E5GBH1_CUCME1.8e-0985.11Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0J8EDH7_BETVU3.3e-0877.08Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g222770 PE=4 S... [more]
A0A0D2V9H6_GOSRA3.3e-0876.60Uncharacterized protein OS=Gossypium raimondii GN=B456_013G051400 PE=4 SV=1[more]
BLAST of CmaCh04G004380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G004380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|357480709|ref|XP_003610640.1|6.6e-1082.98hypothetical protein MTR_5g005330 [Medicago truncatula][more]
gi|659108841|ref|XP_008454414.1|2.5e-0985.11PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo][more]
gi|449465089|ref|XP_004150261.1|2.5e-0985.11PREDICTED: uncharacterized protein LOC101219359 [Cucumis sativus][more]
gi|502158909|ref|XP_004511322.1|2.1e-0880.85PREDICTED: uncharacterized protein LOC101498896 [Cicer arietinum][more]
gi|870848727|gb|KMT01016.1|4.7e-0877.08hypothetical protein BVRB_9g222770 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G004380.1CmaCh04G004380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34563FAMILY NOT NAMEDcoord: 31..77
score: 1.8
NoneNo IPR availablePANTHERPTHR34563:SF2SUBFAMILY NOT NAMEDcoord: 31..77
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G004380Carg08111Silver-seed gourdcarcmaB0529
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G004380Cucurbita pepo (Zucchini)cmacpeB715
CmaCh04G004380Cucurbita pepo (Zucchini)cmacpeB719
CmaCh04G004380Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G004380Cucurbita pepo (Zucchini)cmacpeB749
CmaCh04G004380Bottle gourd (USVL1VR-Ls)cmalsiB640
CmaCh04G004380Bottle gourd (USVL1VR-Ls)cmalsiB657
CmaCh04G004380Bottle gourd (USVL1VR-Ls)cmalsiB662
CmaCh04G004380Bottle gourd (USVL1VR-Ls)cmalsiB674
CmaCh04G004380Cucumber (Gy14) v2cgybcmaB543
CmaCh04G004380Cucumber (Gy14) v2cgybcmaB553
CmaCh04G004380Cucumber (Gy14) v2cgybcmaB843
CmaCh04G004380Cucumber (Gy14) v2cgybcmaB964
CmaCh04G004380Melon (DHL92) v3.6.1cmamedB754
CmaCh04G004380Melon (DHL92) v3.6.1cmamedB787
CmaCh04G004380Melon (DHL92) v3.6.1cmamedB789
CmaCh04G004380Melon (DHL92) v3.6.1cmamedB801
CmaCh04G004380Silver-seed gourdcarcmaB0408
CmaCh04G004380Silver-seed gourdcarcmaB0634
CmaCh04G004380Silver-seed gourdcarcmaB1027
CmaCh04G004380Cucumber (Chinese Long) v3cmacucB0854
CmaCh04G004380Cucumber (Chinese Long) v3cmacucB0843
CmaCh04G004380Cucumber (Chinese Long) v3cmacucB0914
CmaCh04G004380Cucumber (Chinese Long) v3cmacucB0918
CmaCh04G004380Watermelon (97103) v2cmawmbB713
CmaCh04G004380Watermelon (97103) v2cmawmbB744
CmaCh04G004380Wax gourdcmawgoB0814
CmaCh04G004380Wax gourdcmawgoB0915
CmaCh04G004380Cucurbita maxima (Rimu)cmacmaB163
CmaCh04G004380Cucurbita maxima (Rimu)cmacmaB351
CmaCh04G004380Cucumber (Gy14) v1cgycmaB0232
CmaCh04G004380Cucumber (Gy14) v1cgycmaB0629
CmaCh04G004380Cucumber (Gy14) v1cgycmaB0825
CmaCh04G004380Cucurbita moschata (Rifu)cmacmoB678
CmaCh04G004380Cucurbita moschata (Rifu)cmacmoB701
CmaCh04G004380Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G004380Wild cucumber (PI 183967)cmacpiB715
CmaCh04G004380Wild cucumber (PI 183967)cmacpiB786
CmaCh04G004380Cucumber (Chinese Long) v2cmacuB709
CmaCh04G004380Cucumber (Chinese Long) v2cmacuB721
CmaCh04G004380Cucumber (Chinese Long) v2cmacuB775
CmaCh04G004380Cucumber (Chinese Long) v2cmacuB776
CmaCh04G004380Melon (DHL92) v3.5.1cmameB672
CmaCh04G004380Melon (DHL92) v3.5.1cmameB700
CmaCh04G004380Melon (DHL92) v3.5.1cmameB711
CmaCh04G004380Watermelon (Charleston Gray)cmawcgB609
CmaCh04G004380Watermelon (97103) v1cmawmB653