Carg06878 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06878
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger, RING-type
Location	Cucurbita_argyrosperma_scaffold_065 : 98854 .. 101169 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCGGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTTTTATTCTTTCTCTTCATTTCGAAGTTGATATACTTTCACGAACTTTCTTTATCGTAGAAAATCAGCGGCGTAAAACTTGGCGTGGGAATGGTTGTCTCCGATTTGTGTTGAGAGTTTTAATTAGAAGATTTGTGTTGATTTAGTCTTGTTGTCATTCATTTTCAAGATTTGCTTTTCTGGGGGGCTAATTGAAGTCTGAGATCGTCGGTTCAGTCTTGTTTTCTTTCATTGTCTAGATTACGCACATCTGGAGGCTTGTTTTCTGCGTTTATCATCTAGGAAGAATATGGTTAAAACGAATTGAATTCATGTTTGTACCATAAGAAGCAGAAGCAATTGTTTATGTTTATCCGACTGCCAGTTTGAATTGCTACGTCTCCCCCTTGCGAATTTGGTCGATCTCCTGCGCATGCTTATTTATTTTATGAAAACCTTCCCCTGTTGCAGTCAGAGTTGCATATCTATGATTTTGTTGGTCTTTTTTCAATTATTTGCGCATACATACTTCGAGGATTGCTAACTTGCTGTACTTGCACGTTCAGGTGGAAATGTGGAAGAAGTTAGAAATCCAAGGGACGGGGCACGGGAGCCATGATGGCGCCTGTGCAATTTGTTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGGTTAGTTCTAATTGATTAATCGTTTGTCTACTAATTAATGTTTTTTATGGAATGACTTTCACCTGCTTCAATACATTAGGTAATTGTTGATCTGTTTCTTTCCAGTATTTGTATGGGAATCCTTTTTGCAGTCAAATGTTGAAGTTCTATAGATGGTGTTATTCTAATGCTTGCTTTTATCATTTATATTTCATTTTGTTGCGACTAATATGCTTGTAATGGAGATGGAGTGTAAAGTTCTTGCGAACATATATTCACTGTATCCATATTGTCTTTTGTGCAATGTTTCTAATATTACTTGAGGTTGTTCGGATTTAATTGAAGAGGTATGCTGTTCTAGGCTTATAACCAAAGCATCTTGGAGTTAGGAAATTGTATGGTACTGAGCCTAATGGTTAATCTATAGTTTGATGATCTTTGAAAGTTATGTCAGAAACTAGCAGAAGTCATTGTATAGAAGTTAAAATGCTTGCTTGGTGGGACTTGGATAGAAATTTGTTGTTCTTTGAAGCATTAGAAATTCTGTCCTTGTGTTGTTTGTGGAATGAAGGTGACCTTTTATAGCTGTGCATATGGGCGTTGTCTTATTTTGTTTCATCTTTCTTTAACTTTCATGAAGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGATCTCTTGACGGGAGGTATGTCCATTCATCGTTCTATGGACCTTTGATAGTTTAGAGTTTGAACTCTAGGTGGCCTGGTATCTTTTTTAAGTTACTGTTCTTGCTAAGTTACTGTTCTTACTATATATTGCTTGTGCATTGTTTAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAACTTAATGTCGAGCTCCTGTATAGAAATAAGCCCTGCGCTTGACCTTGTGTACAGTTTCTAAGGTTCATTTTAGTTTGCTGGGCGATGTGCCTTACCAGATGCTGGTAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATTATAAACATTGGCTCTCAAAAGTAATCATAAAAGTATTAAGACTTTATCAATCTCTTATTTTTTTTTAGGGGTTATTGTTGAGGATTATTGGGAGTGAGTCCCACCCTTGTTAATTTAAGGGAGGA

mRNA sequence

ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCGGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGTATTTGTATGGGAATCCTTTTTGCAGTCAAATGTTGAAGTTCTATAGATGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGATCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAACTTAATGTCGAGCTCCTGTATAGAAATAAGCCCTGCGCTTGACCTTGTGTACAGTTTCTAAGGTTCATTTTAGTTTGCTGGGCGATGTGCCTTACCAGATGCTGGTAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATTATAAACATTGGCTCTCAAAAGTAATCATAAAAGTATTAAGACTTTATCAATCTCTTATTTTTTTTTAGGGGTTATTGTTGAGGATTATTGGGAGTGAGTCCCACCCTTGTTAATTTAAGGGAGGA

Coding sequence (CDS)

ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCGGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGTATTTGTATGGGAATCCTTTTTGCAGTCAAATGTTGAAGTTCTATAGATGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGATCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAA

Protein sequence

MTSSGISLKSAELSDAVQDLKVCDQYLYGNPFCSQMLKFYRCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN

Homology

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BLAST of Carg06878 vs. NCBI nr
Match: XP_023511780.1 (uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.1 bits (967), Expect = 4.0e-101
Identity = 199/240 (82.92%), Postives = 201/240 (83.75%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQY-------LYGN---------PFCSQMLKFYR--- 60
           MTSSGISLKSAELSDAVQDLKVCDQ        + G            C   +       
Sbjct: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60

Query: 61  --------CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
                   CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 214
           EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN
Sbjct: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240

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BLAST of Carg06878 vs. NCBI nr
Match: XP_022943783.1 (uncharacterized protein LOC111448431 [Cucurbita moschata])

HSP 1 Score: 374.0 bits (959), Expect = 3.4e-100
Identity = 198/240 (82.50%), Postives = 200/240 (83.33%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQY-------LYGN---------PFCSQMLKFYR--- 60
           MTSSGISLKSAELSDAVQDLKVCDQ        + G            C   +       
Sbjct: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60

Query: 61  --------CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
                   CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 214
           EARPVLRPEFSGASSSREP TKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN
Sbjct: 181 EARPVLRPEFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240

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BLAST of Carg06878 vs. NCBI nr
Match: XP_022987030.1 (uncharacterized protein LOC111484597 [Cucurbita maxima])

HSP 1 Score: 371.7 bits (953), Expect = 1.7e-99
Identity = 197/239 (82.43%), Postives = 200/239 (83.68%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQY--------------LYGN-PFCSQMLKFYR---- 60
           MTSSGISLKSAELSDAVQDLKVCDQ                +G+   C   +        
Sbjct: 1   MTSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSHGSCAICLNKISLPETALV 60

Query: 61  -------CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 120
                  CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 61  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 120

Query: 121 WYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQE 180
           WYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLG SPSLRIGNRRWGDNGYVRAGRQE
Sbjct: 121 WYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQE 180

Query: 181 ARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 214
           ARPVLRPEFSGASSSREP TKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN
Sbjct: 181 ARPVLRPEFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 239

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BLAST of Carg06878 vs. NCBI nr
Match: XP_022995136.1 (uncharacterized protein LOC111490767 [Cucurbita maxima])

HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84
Identity = 173/241 (71.78%), Postives = 184/241 (76.35%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQYLYG---------------------NPFCSQMLKF 60
           M SSGIS +SAELSDAVQ L+VC+Q   G                     N    Q    
Sbjct: 1   MASSGISTESAELSDAVQILEVCNQIEMGKKVEIHGTGHGSHDGVCAICLNKIALQETAL 60

Query: 61  YR------CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
            R      C TCILRWASY + PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRA
Sbjct: 61  VRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWY PLIV+DREETY+DP+EYYPYED DEE EEAYLGAS SLRIGNRRWGDNGYVR GRQ
Sbjct: 121 SWYVPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 180

Query: 181 EARPVLR---PEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 212
           EARPV+R   P  +GASSSREP  KDASKDKTGRRAKRALKREAADKAAAAKHQEHLARF
Sbjct: 181 EARPVIRSTVPVHAGASSSREPIKKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 240

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BLAST of Carg06878 vs. NCBI nr
Match: XP_022958365.1 (uncharacterized protein LOC111459609 [Cucurbita moschata])

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 172/241 (71.37%), Postives = 183/241 (75.93%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQYLYG---------------------NPFCSQMLKF 60
           M SSGIS +SAELSDAVQ L+VC+Q   G                     N    Q    
Sbjct: 1   MASSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETAL 60

Query: 61  YR------CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
            R      C TCILRWASY + PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRA
Sbjct: 61  VRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWY PLIV+DREETY+DP+EYYPYED DEE EEAYLGAS SLRIGNRRWGDNGYVR GRQ
Sbjct: 121 SWYIPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 180

Query: 181 EARPVLR---PEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 212
           EARPV+R   P  +GASSSREP  KDASKDKTGRRAKRALKREAADKAAAAKHQE LARF
Sbjct: 181 EARPVIRSTVPVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQERLARF 240

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BLAST of Carg06878 vs. TAIR10
Match: AT5G12310.1 (RING/U-box superfamily protein)

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-43
Identity = 102/188 (54.26%), Postives = 118/188 (62.77%), Query Frame = 0


Query: 42  CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIV 101
           C TCILRWASY +KPTCPQCK PF+FL VHR+LDGS+ D+MFEESVCLLLRASW++PL  
Sbjct: 66  CVTCILRWASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMFEESVCLLLRASWFQPLEA 125

Query: 102 KDR-------EETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQE 161
            +R                            E Y+  S SLR+GNRRWGDNG+VRAGRQE
Sbjct: 126 VERVSDXXXXXXXXXXXXXXXXXXXXXXXXXEFYMQGS-SLRLGNRRWGDNGFVRAGRQE 185

Query: 162 ARPVLRPEFSGASSSREP-------PTKDASKDKTGRRAKRALKREAADKA----AAAKH 212
           ARPV      G +S  EP       P +  S   TGRRAKRA+KREAA+KA    AAAKH
Sbjct: 186 ARPVQHKNRGGQASGSEPASSSSCEPKEKTSSAITGRRAKRAMKREAANKAAEAVAAAKH 245

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BLAST of Carg06878 vs. TAIR10
Match: AT5G19430.1 (RING/U-box superfamily protein)

HSP 1 Score: 162.9 bits (411), Expect = 2.1e-40
Identity = 98/188 (52.13%), Postives = 117/188 (62.23%), Query Frame = 0


Query: 42  CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIV 101
           C TCILRWAS  + PTCPQCKHPF+FL VHR+LDGSI D++FEESVCLLLRASW+ PL V
Sbjct: 69  CVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDV 128

Query: 102 KDREE----TYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARP 161
            ++       +DD +  Y YED+D++L+E YL  S SLRIGNRRWG NG+VR+GRQEARP
Sbjct: 129 VEQASYSHGYHDDFDIPYDYEDEDDDLDEFYLHGS-SLRIGNRRWGGNGFVRSGRQEARP 188

Query: 162 VLRPEFSG----------ASSSREPPTKDASKDKTGRRAKRALKREAADKA----AAAKH 212
           V R  +SG                                    REAA+KA    AAAKH
Sbjct: 189 VQR--YSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAANKAAEVTAAAKH 248

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BLAST of Carg06878 vs. TrEMBL
Match: tr|A0A061GU17|A0A061GU17_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.5e-67
Identity = 132/172 (76.74%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 42  CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIV 101
           C TCILRWA+Y++ PTCPQCKHPFEFL VHRSLDG I+DYMFEESVCLLLRA+W+EPLIV
Sbjct: 68  CVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAWFEPLIV 127

Query: 102 KDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRP 161
           +DREE YDD E+YYPYE+ D++ +EAY  +SPSLRIGNRRWGDNGYVR+GRQEARPV R 
Sbjct: 128 EDREELYDDLEDYYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQEARPVQRS 187

Query: 162 EF--SGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 212
            F  SGA SSREP  K+ +K   GRRAKRALKREAADKAAAAKHQEHL R G
Sbjct: 188 NFQDSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHLMRLG 238

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BLAST of Carg06878 vs. TrEMBL
Match: tr|A0A061GZE8|A0A061GZE8_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.5e-67
Identity = 132/172 (76.74%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 42  CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIV 101
           C TCILRWA+Y++ PTCPQCKHPFEFL VHRSLDG I+DYMFEESVCLLLRA+W+EPLIV
Sbjct: 67  CVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAWFEPLIV 126

Query: 102 KDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRP 161
           +DREE YDD E+YYPYE+ D++ +EAY  +SPSLRIGNRRWGDNGYVR+GRQEARPV R 
Sbjct: 127 EDREELYDDLEDYYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQEARPVQRS 186

Query: 162 EF--SGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 212
            F  SGA SSREP  K+ +K   GRRAKRALKREAADKAAAAKHQEHL R G
Sbjct: 187 NFQDSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHLMRLG 237

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BLAST of Carg06878 vs. TrEMBL
Match: tr|A0A2P2P163|A0A2P2P163_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.8e-65
Identity = 130/175 (74.29%), Postives = 150/175 (85.71%), Query Frame = 0


Query: 42  CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIV 101
           C TCIL+WA+Y QKPTCPQCKHPFEFL VHRSLDGSI DYMFEESVCLLLRA+W++PL V
Sbjct: 68  CVTCILQWATYRQKPTCPQCKHPFEFLNVHRSLDGSIQDYMFEESVCLLLRATWFQPLTV 127

Query: 102 KDREETYDDPEEYYPYE---DQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPV 161
           K  E+ YDDP++YYPYE   D++++L+E YL  S +LRIGNRRWGDNGYVRAGRQEARPV
Sbjct: 128 KYHEDVYDDPQDYYPYEYDDDEEDDLDEVYLSNSSTLRIGNRRWGDNGYVRAGRQEARPV 187

Query: 162 LRP--EFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 212
            RP  +  GASSSR  P K+A+ D+TGRRAKRALKREAAD+AAAAKHQ+HLAR G
Sbjct: 188 YRPNSQDPGASSSR-GPKKEAAIDRTGRRAKRALKREAADRAAAAKHQQHLARLG 241

[Close]

BLAST of Carg06878 vs. TrEMBL
Match: tr|V4UB94|V4UB94_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016417mg PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 8.8e-65
Identity = 129/174 (74.14%), Postives = 144/174 (82.76%), Query Frame = 0


Query: 42  CTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIV 101
           C TCILRWASY + PTCPQCKHPFEFL VHRSLDGSI DYMFEESVCLLLRA+W++PLIV
Sbjct: 69  CATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDYMFEESVCLLLRATWFKPLIV 128

Query: 102 KDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRP 161
           +D     DD E+ Y YED++++L+E Y  +S SLRIGNRRWGDNGYVRAGRQEARPV RP
Sbjct: 129 EDHVVVQDDLEDDYSYEDEEDDLDEVYFRSSSSLRIGNRRWGDNGYVRAGRQEARPVCRP 188

Query: 162 EFS--GASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 214
                GASSSREP  K+ +K  TGRRAKRALKREAADKAAAAKHQ+HLAR G N
Sbjct: 189 NSQDVGASSSREPKKKEVAKVTTGRRAKRALKREAADKAAAAKHQQHLARLGRN 242

[Close]

BLAST of Carg06878 vs. TrEMBL
Match: tr|A0A2H5PF33|A0A2H5PF33_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_130490 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 8.8e-65
Identity = 133/198 (67.17%), Postives = 153/198 (77.27%), Query Frame = 0


Query: 18  QDLKVCDQYLYGNPFCSQMLKFYRCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGS 77
           + +K+    L G  F   +L    C TCILRWASY + PTCPQCKHPFEFL VHRSLDGS
Sbjct: 105 RSVKIKTNVLCGFVFLCGILS---CATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGS 164

Query: 78  IHDYMFEESVCLLLRASWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRI 137
           I DYMFEESVCLLLRA+W++PLIV+D     DD E+ Y YED++++L+E Y  +S SLRI
Sbjct: 165 ISDYMFEESVCLLLRATWFKPLIVEDHVVVQDDMEDDYSYEDEEDDLDEVYFRSSSSLRI 224

Query: 138 GNRRWGDNGYVRAGRQEARPVLRPEFS--GASSSREPPTKDASKDKTGRRAKRALKREAA 197
           GNRRWGDNGYVRAGRQEARPV RP     GASSSREP  K+ +K  TGRRAKRALKREAA
Sbjct: 225 GNRRWGDNGYVRAGRQEARPVCRPNSQDVGASSSREPKKKEVAKVTTGRRAKRALKREAA 284

Query: 198 DKAAAAKHQEHLARFGLN 214
           DKAAA+KHQ+HLAR G N
Sbjct: 285 DKAAASKHQQHLARLGRN 299

The following BLAST results are available for this feature:

BLAST of Carg06878 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511780.1	4.0e-101	82.92	uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo]	[more]
XP_022943783.1	3.4e-100	82.50	uncharacterized protein LOC111448431 [Cucurbita moschata]	[more]
XP_022987030.1	1.7e-99	82.43	uncharacterized protein LOC111484597 [Cucurbita maxima]	[more]
XP_022995136.1	2.0e-84	71.78	uncharacterized protein LOC111490767 [Cucurbita maxima]	[more]
XP_022958365.1	1.3e-83	71.37	uncharacterized protein LOC111459609 [Cucurbita moschata]	[more]

BLAST of Carg06878 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12310.1	2.7e-43	54.26	RING/U-box superfamily protein	[more]
AT5G19430.1	2.1e-40	52.13	RING/U-box superfamily protein	[more]

BLAST of Carg06878 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06878 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061GU17\|A0A061GU17_THECC	2.5e-67	76.74	RING/U-box superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_04093...	[more]
tr\|A0A061GZE8\|A0A061GZE8_THECC	2.5e-67	76.74	RING/U-box superfamily protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_04093...	[more]
tr\|A0A2P2P163\|A0A2P2P163_RHIMU	1.8e-65	74.29	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|V4UB94\|V4UB94_9ROSI	8.8e-65	74.14	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016417mg PE=4 ...	[more]
tr\|A0A2H5PF33\|A0A2H5PF33_CITUN	8.8e-65	67.17	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_130490 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06878-RA	Carg06878-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..204

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06878	Cla008576	Watermelon (97103) v1	carwmB0520
Carg06878	Csa6G431760	Cucumber (Chinese Long) v2	carcuB0553
Carg06878	MELO3C014562	Melon (DHL92) v3.5.1	carmeB0528
Carg06878	ClCG02G022870	Watermelon (Charleston Gray)	carwcgB0503
Carg06878	CSPI06G23870	Wild cucumber (PI 183967)	carcpiB0560
Carg06878	Cucsa.087010	Cucumber (Gy14) v1	carcgyB0595
Carg06878	CmaCh02G012750	Cucurbita maxima (Rimu)	carcmaB0733
Carg06878	CmaCh20G001100	Cucurbita maxima (Rimu)	carcmaB0732
Carg06878	CmoCh02G013160	Cucurbita moschata (Rifu)	carcmoB0710
Carg06878	Lsi10G010890	Bottle gourd (USVL1VR-Ls)	carlsiB471
Carg06878	Cp4.1LG16g08580	Cucurbita pepo (Zucchini)	carcpeB0733
Carg06878	Cp4.1LG05g04790	Cucurbita pepo (Zucchini)	carcpeB0741
Carg06878	CsGy6G023220	Cucumber (Gy14) v2	carcgybB0530
Carg06878	MELO3C014562.2	Melon (DHL92) v3.6.1	carmedB0533
Carg06878	CsaV3_6G039010	Cucumber (Chinese Long) v3	carcucB0560
Carg06878	Cla97C02G048950	Watermelon (97103) v2	carwmbB0543
Carg06878	Bhi10G000198	Wax gourd	carwgoB0629

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06878	Carg02689	Silver-seed gourd	carcarB498

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06878	Cucurbita moschata (Rifu)	carcmoB0709