Cp4.1LG05g04790 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g04790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRing finger-like protein
LocationCp4.1LG05 : 2780316 .. 2783373 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGGTCAAATCAAATGGAGGCAAGTAACCCTAGGAATAAATTTTAATTATAAGTGAAGGGACTTCAAATCCACAAGTTCTGATTTTATTTGCAGAGAACTCTTCTGGATCGCCATTAGAGAATATTCTCGAGCATCTTTTTCTTCGTCTCTTTTGCTTCAGAATAATTCTTCAGCATCTCCTTTCATTTCAAGTTTCGATTTCTGCTGAATAACTGTTGTTCTGGGTTCTGTGTGATCTAATTTATAAATCGAGAAGAATCGGAGGTGAAACCCTCGTGTTCTCGCCATGGCTTCTTCGGGAATCTCTACTGAAAGCGCCGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGGTTTTAATCTATTTTTTCACTTTTGAAGTTGTTACACTTTCTTGCGTAAAACTTGGCGCGAGAAATGGTTGTTTTTTTGTGTTGAGAGTTCGAATTGGAAGTATCGTTGATCTAATCTTGTTTTCTAGATTTGCGCTGGTCAAGGGTTAATTGAAGTGTTATCGTCGGTTTAGTCTTGTTTTATTTCATTTTCAAGATTTTCGTGGCGTCGATAAGCGTATTTCTCCTTTTTAATATCAAGGAAGTACGTGGTCGTAATTAATGGATTTGATGTGCGTGTTTTTTTTTACTCTGAGGATCCGTAGGAAGCGGGAGCTATTGTTAACATTCATTGATTTCCGTTATCCGATTGCCTGCTATTAGATCACTGTTGTTTTGAAATTGTGAATTTGGTCACCTGCGCATGCTATTTTATTTTCCAATGAAAGTTCTTATCTCTTGCCCTTGGTGTTGCATAGTGTTGAAGTGTCTCTTTTCAAACATTAGTCATTTGCATAAATATATTTTGAGGATTGCTAAGTTGCTGAACTTCTCTGTTCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGGTTTGTTCTGATTGATTAATCTTTCATCTATCTATTAATAGTTTTTATAGCACGACTTTCATCTGCTATACATTAGGTAATTTGTTGATCTGTTCCTTTTCTGTATTTTGTATGGGAATCTTTTTTGCAGTCAAATGTTGACGTTCTATAGATGGTGCAATTCTTATGCTGCATTTATCATATATATTTCATTTCATTGTGGTTCTATGCTTGAATTGGAGTTGGAGTTTTAAGATCTTGCGAACATATTCCTGGGACTCCGCTAAACTTTATAGGAGAAAATTCATTGTATCCATATTGCTATTGGTACAATGTTTCTAATTGTGCTTCAGGTTGCTGGGATTTAATGGAAGAGGTATGCTATTTTAGATTTATAGCCCAAGTATCTTGGAGTCGGAGAAAATGCATGGTTCAGAGTCTGATGGTTAATCTGTTAATTCTCGTCTTATTTAGTTTGTTAATAATTAATTATTGATTATTGAAGTTAGAATGCTTGCTTGGTGAGACTGGGATAGAAACCTGTTGTACTCGGTACTCAGTGACTTATTGTGAGCCTATGAATCTCATAGATGTCAGCTTTGGTAACGCGTTCGTATTCTACATAGGTTGGATACTTGTTAAATCAGACACATATCAAATACTGTGTTGAACATTTATGGAGTACAATAGACATGAATCAGACGCATCTTGAACAATTATTAGGCATTTGAACTAAGTGTTGCAACATATTGTTGAACAAGGCTGGGATGTTTAGAAAATGACAATGTCCGTGTTAGTGTCTTTGCTTCTTTGTTATTAGCCGATTAGTCTTTCATCACCTCCAAATTGTCATCACATACTCGATGCTTTTGGTGTCTGTTGCAAAGTTTAATTTTATGTTCTATTACTTGGTGTGGGAACATTTCCTCTATGACTATTGCACCGAACACTTTCATTTAGTTTTCACTTTCAGCTTAGGAACTTATCAGCAATAATTAAACCAAACAAAAAATGAAGTGGCAAATGGTTAAGTGATTTGTCTAATGTTTTCCAACCACTGAAGTATTACAAATATTTTCCTTGCTTTTTTTGAGGAATAGTGTGATCTTTTACAGTTTATATACATATGGGCATTATATTCTTTTATTAATGCATTGTTTTACTTTCATGAAGTGCGACTTGCATCCTTCGATGGGCCTCGTATAATAAGAATCCGACGTGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGGTATGTCCCTTCATCATTCTATGGACCTTTTATAGTTTAGAGTTGCAGTATCTTTCTAAATTAATGTTCTTACTTTTCTATCCATTTATTGTCTGCGTATTGTAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTGCTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGACGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTATAAAAAAAGATGATTCAAAAGATAAAACAGGTCGACGAGCTAAAAGAGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACATCTAGCTAGGTTTGGGCGGAAGTGATTCAAGCTCCTGTATATAACAAGCCTTGCGCTTAGACCCTGTGTACAGTTCTAAGATTCAATTTACTTTCACAGTTGACGTACCTTACCTCCCCTGAGCCTGGTGGCTCCCAATTAAATCTATATGATGGAGATTGTACTTGCAAGGTATAAAGGACACCCCAATGAGTTCTTTGTATGAACATTGAATCTCAAAATCAATCATAGAACAATTGTTATGGTCGGATTTTCTGTTCTTTTT

mRNA sequence

GGTGGTCAAATCAAATGGAGGCAAGTAACCCTAGGAATAAATTTTAATTATAAGTGAAGGGACTTCAAATCCACAAGTTCTGATTTTATTTGCAGAGAACTCTTCTGGATCGCCATTAGAGAATATTCTCGAGCATCTTTTTCTTCGTCTCTTTTGCTTCAGAATAATTCTTCAGCATCTCCTTTCATTTCAAGTTTCGATTTCTGCTGAATAACTGTTGTTCTGGGTTCTGTGTGATCTAATTTATAAATCGAGAAGAATCGGAGGTGAAACCCTCGTGTTCTCGCCATGGCTTCTTCGGGAATCTCTACTGAAAGCGCCGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCGTATAATAAGAATCCGACGTGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTGCTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGACGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTATAAAAAAAGATGATTCAAAAGATAAAACAGGTCGACGAGCTAAAAGAGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACATCTAGCTAGGTTTGGGCGGAAGTGATTCAAGCTCCTGTATATAACAAGCCTTGCGCTTAGACCCTGTGTACAGTTCTAAGATTCAATTTACTTTCACAGTTGACGTACCTTACCTCCCCTGAGCCTGGTGGCTCCCAATTAAATCTATATGATGGAGATTGTACTTGCAAGGTATAAAGGACACCCCAATGAGTTCTTTGTATGAACATTGAATCTCAAAATCAATCATAGAACAATTGTTATGGTCGGATTTTCTGTTCTTTTT

Coding sequence (CDS)

ATGGCTTCTTCGGGAATCTCTACTGAAAGCGCCGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCGTATAATAAGAATCCGACGTGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTGCTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGACGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTATAAAAAAAGATGATTCAAAAGATAAAACAGGTCGACGAGCTAAAAGAGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACATCTAGCTAGGTTTGGGCGGAAGTGA

Protein sequence

MASSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTVPVHAGASSSREPIKKDDSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
Homology
[Close]
BLAST of Cp4.1LG05g04790 vs. TrEMBL
Match: A0A0A0KK15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 4.0e-108
Identity = 202/244 (82.79%), Postives = 215/244 (88.11%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           SSGIS +SAE+SDAVQ    C+Q+EMGKKVEIQGTGHGSHDG CAICLNKIALQETALVR
Sbjct: 36  SSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 95

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYCATCILRWASY K PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRASW
Sbjct: 96  GCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 155

Query: 123 YIPLIVEDREETYEDP--DEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 182
           Y P I+E+REETY+DP  D+YYPYEDDDEE E+AYLG S SLRIGNRRWG NGYVR GRQ
Sbjct: 156 YKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 215

Query: 183 EARPVIRSTVPVHAGASSSREPIKKD-DSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 242
           EARPV+R       G SSSREP+ K   SKDKTGRRAKRALKREAADKAAAAKHQEHLAR
Sbjct: 216 EARPVLRQEF---TGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 275

Query: 243 FGRK 244
           FGRK
Sbjct: 276 FGRK 276

[Close]
BLAST of Cp4.1LG05g04790 vs. TrEMBL
Match: M5X7I0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.5e-86
Identity = 165/233 (70.82%), Postives = 193/233 (82.83%), Query Frame = 1 

Query: 13  LSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATC 72
           LSD +      +Q EM    +      G+H GVCAICL++I LQETALV+GCEHAYCATC
Sbjct: 14  LSDLINSSTQQHQGEMQSNTDNVEKRCGNHGGVCAICLDEIMLQETALVKGCEHAYCATC 73

Query: 73  ILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDRE 132
           ILRW +Y++ PTCPQCKHPFEFL VHRSLDGS+HD+MFEESVCLLLRA W+ PLIVE+RE
Sbjct: 74  ILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLRAKWFEPLIVEERE 133

Query: 133 ETYEDPDE-YYPYED-DDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTV 192
           + Y+DPD+ YYPYED +D++ +EAY  +SSS+RIGNRRWGDNGYVRGGRQEARPV RS +
Sbjct: 134 DVYDDPDDYYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYVRGGRQEARPVNRSNI 193

Query: 193 PVHAGASSSREPIKKDDSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 244
              +GASSSREP KK+ + DKTGRRAKRALKREAADKAAAAKHQ+HLAR GRK
Sbjct: 194 E-DSGASSSREPRKKEAAMDKTGRRAKRALKREAADKAAAAKHQQHLARLGRK 245

[Close]
BLAST of Cp4.1LG05g04790 vs. TrEMBL
Match: B9GG85_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28270g PE=4 SV=2)

HSP 1 Score: 320.5 bits (820), Expect = 1.8e-84
Identity = 156/223 (69.96%), Postives = 184/223 (82.51%), Query Frame = 1 

Query: 25  QIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPT 84
           Q EM  KVE      G+H G+CAICL+KI LQETALV+GCEHAYC TCILRW++Y KNPT
Sbjct: 19  QGEMESKVESSERACGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWSTYTKNPT 78

Query: 85  CPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDREETYEDPDEYYPY 144
           CPQCKHPFEFL +HRSLDGS+ D+MFEESVCLLLRASW++ L VED E+ YEDP++YYPY
Sbjct: 79  CPQCKHPFEFLNIHRSLDGSIQDYMFEESVCLLLRASWFMTLTVEDHEDVYEDPEDYYPY 138

Query: 145 ----EDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTVPVHAGASSSR 204
               EDDD++ +E YL +SS+LRIGNRRWGDNGYVR G QEARPV ++     +GA +SR
Sbjct: 139 EFEDEDDDDDLDEVYLSSSSNLRIGNRRWGDNGYVRAGHQEARPVYQADFK-DSGACTSR 198

Query: 205 EPIKKDDSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 244
           EP KK+ +KD+TGRRAKR LKREAADKAAA+KHQ+HLAR GRK
Sbjct: 199 EPKKKEAAKDRTGRRAKRTLKREAADKAAASKHQQHLARLGRK 240

[Close]
BLAST of Cp4.1LG05g04790 vs. TrEMBL
Match: A0A061GU17_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-83
Identity = 162/241 (67.22%), Postives = 194/241 (80.50%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           +S I  ++ ++ +A+  L + +Q EM  K  +   G  +H G+CAICL+KI LQETALV+
Sbjct: 2   TSVIKIDAEQIVNALPNLSLQDQKEMKNKGAVGEEGCENHSGICAICLDKIVLQETALVK 61

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYC TCILRWA+Y+K PTCPQCKHPFEFL VHRSLDG ++D+MFEESVCLLLRA+W
Sbjct: 62  GCEHAYCVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAW 121

Query: 123 YIPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEA 182
           + PLIVEDREE Y+D ++YYPYE+DD++ +EAY  +S SLRIGNRRWGDNGYVR GRQEA
Sbjct: 122 FEPLIVEDREELYDDLEDYYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQEA 181

Query: 183 RPVIRSTVPVHAGASSSREPIKKDDSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGR 242
           RPV RS     +GA SSREP KK+ +K   GRRAKRALKREAADKAAAAKHQEHL R GR
Sbjct: 182 RPVQRSNFQ-DSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHLMRLGR 240

Query: 243 K 244
           K
Sbjct: 242 K 240

[Close]
BLAST of Cp4.1LG05g04790 vs. TrEMBL
Match: A0A061GZE8_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-82
Identity = 162/241 (67.22%), Postives = 194/241 (80.50%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           +S I  ++ ++ +A+  L + +Q EM  K  +   G  +H G+CAICL+KI LQETALV+
Sbjct: 2   TSVIKIDAEQIVNALPNLSLQDQ-EMKNKGAVGEEGCENHSGICAICLDKIVLQETALVK 61

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYC TCILRWA+Y+K PTCPQCKHPFEFL VHRSLDG ++D+MFEESVCLLLRA+W
Sbjct: 62  GCEHAYCVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAW 121

Query: 123 YIPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEA 182
           + PLIVEDREE Y+D ++YYPYE+DD++ +EAY  +S SLRIGNRRWGDNGYVR GRQEA
Sbjct: 122 FEPLIVEDREELYDDLEDYYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQEA 181

Query: 183 RPVIRSTVPVHAGASSSREPIKKDDSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGR 242
           RPV RS     +GA SSREP KK+ +K   GRRAKRALKREAADKAAAAKHQEHL R GR
Sbjct: 182 RPVQRSNFQ-DSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHLMRLGR 239

Query: 243 K 244
           K
Sbjct: 242 K 239

[Close]
BLAST of Cp4.1LG05g04790 vs. TAIR10
Match: AT5G19430.1 (AT5G19430.1 RING/U-box superfamily protein)

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-68
Identity = 139/245 (56.73%), Postives = 176/245 (71.84%), Query Frame = 1 

Query: 12  ELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCAT 71
           ++ D +Q L + NQ +   + EI     G+H G CAICL++I LQETA+V+GCEH YC T
Sbjct: 12  QVIDGIQDLALQNQDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHTYCVT 71

Query: 72  CILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDR 131
           CILRWAS  ++PTCPQCKHPF+FL VHR+LDGS+ DF+FEESVCLLLRASW++PL V ++
Sbjct: 72  CILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDVVEQ 131

Query: 132 EE----TYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIR 191
                  ++D D  Y YED+D++ +E YL   SSLRIGNRRWG NG+VR GRQEARPV R
Sbjct: 132 ASYSHGYHDDFDIPYDYEDEDDDLDEFYL-HGSSLRIGNRRWGGNGFVRSGRQEARPVQR 191

Query: 192 -----STVPVHAGASSSREPIKKDDSKDKTGRRAKRALKREAADKA----AAAKHQEHLA 244
                S+    +G+SSS    K+  + + TGRRAKRA+KREAA+KA    AAAKH+ HL 
Sbjct: 192 YSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHEAHLV 251

[Close]
BLAST of Cp4.1LG05g04790 vs. TAIR10
Match: AT5G12310.1 (AT5G12310.1 RING/U-box superfamily protein)

HSP 1 Score: 237.7 bits (605), Expect = 7.8e-63
Identity = 136/243 (55.97%), Postives = 163/243 (67.08%), Query Frame = 1 

Query: 17  VQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRW 76
           V +L + +Q E            G+H G CAICL+ I LQETA+V+GCEHAYC TCILRW
Sbjct: 14  VDVLPLQDQDEKKTPQVFNELSFGNHGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRW 73

Query: 77  ASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDR----- 136
           ASY + PTCPQCK PF+FL VHR+LDGSV DFMFEESVCLLLRASW+ PL   +R     
Sbjct: 74  ASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMFEESVCLLLRASWFQPLEAVERVSDND 133

Query: 137 --EETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRST 196
                ++ P EY   ++DD++ +E Y+   SSLR+GNRRWGDNG+VR GRQEARPV    
Sbjct: 134 NFNYDFDIPPEYEEEDEDDDDLDEFYM-QGSSLRLGNRRWGDNGFVRAGRQEARPVQHKN 193

Query: 197 VPVHA-----GASSSREPIKKDDSKDKTGRRAKRALKREAADKA----AAAKHQEHLARF 244
               A      +SSS EP K+  S   TGRRAKRA+KREAA+KA    AAAKH+  L R 
Sbjct: 194 RGGQASGSEPASSSSCEP-KEKTSSAITGRRAKRAMKREAANKAAEAVAAAKHEALLVRL 253

[Close]
BLAST of Cp4.1LG05g04790 vs. NCBI nr
Match: gi|449444871|ref|XP_004140197.1| (PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 5.7e-108
Identity = 202/244 (82.79%), Postives = 215/244 (88.11%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           SSGIS +SAE+SDAVQ    C+Q+EMGKKVEIQGTGHGSHDG CAICLNKIALQETALVR
Sbjct: 36  SSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 95

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYCATCILRWASY K PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRASW
Sbjct: 96  GCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 155

Query: 123 YIPLIVEDREETYEDP--DEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 182
           Y P I+E+REETY+DP  D+YYPYEDDDEE E+AYLG S SLRIGNRRWG NGYVR GRQ
Sbjct: 156 YKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 215

Query: 183 EARPVIRSTVPVHAGASSSREPIKKD-DSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 242
           EARPV+R       G SSSREP+ K   SKDKTGRRAKRALKREAADKAAAAKHQEHLAR
Sbjct: 216 EARPVLRQEF---TGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 275

Query: 243 FGRK 244
           FGRK
Sbjct: 276 FGRK 276

[Close]
BLAST of Cp4.1LG05g04790 vs. NCBI nr
Match: gi|778716917|ref|XP_011657615.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 5.7e-108
Identity = 202/244 (82.79%), Postives = 215/244 (88.11%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           SSGIS +SAE+SDAVQ    C+Q+EMGKKVEIQGTGHGSHDG CAICLNKIALQETALVR
Sbjct: 4   SSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 63

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYCATCILRWASY K PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRASW
Sbjct: 64  GCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 123

Query: 123 YIPLIVEDREETYEDP--DEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 182
           Y P I+E+REETY+DP  D+YYPYEDDDEE E+AYLG S SLRIGNRRWG NGYVR GRQ
Sbjct: 124 YKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 183

Query: 183 EARPVIRSTVPVHAGASSSREPIKKD-DSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 242
           EARPV+R       G SSSREP+ K   SKDKTGRRAKRALKREAADKAAAAKHQEHLAR
Sbjct: 184 EARPVLRQEF---TGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 243

Query: 243 FGRK 244
           FGRK
Sbjct: 244 FGRK 244

[Close]
BLAST of Cp4.1LG05g04790 vs. NCBI nr
Match: gi|659097505|ref|XP_008449663.1| (PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo])

HSP 1 Score: 396.0 bits (1016), Expect = 4.8e-107
Identity = 199/243 (81.89%), Postives = 214/243 (88.07%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           SSGIS +SAE+SDAVQ    C+Q+EMGKKVEIQGTGHGSHDG CAICLNKIALQETALVR
Sbjct: 36  SSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 95

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYCATCILRWASY + PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRASW
Sbjct: 96  GCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 155

Query: 123 YIPLIVEDREETYEDP--DEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 182
           Y PLI E+REETY++P  D+YY YEDDDEE E+AYLG S SLRIGNRRWG NGYVR GRQ
Sbjct: 156 YKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 215

Query: 183 EARPVIRSTVPVHAGASSSREPIKKDDSKDKTGRRAKRALKREAADKAAAAKHQEHLARF 242
           EARPV+R       G SSSR+P+ K  SKDKTGRRAKRALKREAADKAAAAKHQEHLARF
Sbjct: 216 EARPVLRQEFT--GGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 275

Query: 243 GRK 244
           GRK
Sbjct: 276 GRK 276

[Close]
BLAST of Cp4.1LG05g04790 vs. NCBI nr
Match: gi|659097507|ref|XP_008449664.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo])

HSP 1 Score: 396.0 bits (1016), Expect = 4.8e-107
Identity = 199/243 (81.89%), Postives = 214/243 (88.07%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           SSGIS +SAE+SDAVQ    C+Q+EMGKKVEIQGTGHGSHDG CAICLNKIALQETALVR
Sbjct: 4   SSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 63

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYCATCILRWASY + PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRASW
Sbjct: 64  GCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 123

Query: 123 YIPLIVEDREETYEDP--DEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 182
           Y PLI E+REETY++P  D+YY YEDDDEE E+AYLG S SLRIGNRRWG NGYVR GRQ
Sbjct: 124 YKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 183

Query: 183 EARPVIRSTVPVHAGASSSREPIKKDDSKDKTGRRAKRALKREAADKAAAAKHQEHLARF 242
           EARPV+R       G SSSR+P+ K  SKDKTGRRAKRALKREAADKAAAAKHQEHLARF
Sbjct: 184 EARPVLRQEFT--GGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 243

Query: 243 GRK 244
           GRK
Sbjct: 244 GRK 244

[Close]
BLAST of Cp4.1LG05g04790 vs. NCBI nr
Match: gi|595899827|ref|XP_007213836.1| (hypothetical protein PRUPE_ppa010547mg [Prunus persica])

HSP 1 Score: 326.6 bits (836), Expect = 3.6e-86
Identity = 165/233 (70.82%), Postives = 193/233 (82.83%), Query Frame = 1 

Query: 13  LSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATC 72
           LSD +      +Q EM    +      G+H GVCAICL++I LQETALV+GCEHAYCATC
Sbjct: 14  LSDLINSSTQQHQGEMQSNTDNVEKRCGNHGGVCAICLDEIMLQETALVKGCEHAYCATC 73

Query: 73  ILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDRE 132
           ILRW +Y++ PTCPQCKHPFEFL VHRSLDGS+HD+MFEESVCLLLRA W+ PLIVE+RE
Sbjct: 74  ILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLRAKWFEPLIVEERE 133

Query: 133 ETYEDPDE-YYPYED-DDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTV 192
           + Y+DPD+ YYPYED +D++ +EAY  +SSS+RIGNRRWGDNGYVRGGRQEARPV RS +
Sbjct: 134 DVYDDPDDYYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYVRGGRQEARPVNRSNI 193

Query: 193 PVHAGASSSREPIKKDDSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 244
              +GASSSREP KK+ + DKTGRRAKRALKREAADKAAAAKHQ+HLAR GRK
Sbjct: 194 E-DSGASSSREPRKKEAAMDKTGRRAKRALKREAADKAAAAKHQQHLARLGRK 245

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g04790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g04790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK15_CUCSA4.0e-10882.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1[more]
M5X7I0_PRUPE2.5e-8670.82Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1[more]
B9GG85_POPTR1.8e-8469.96Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28270g PE=4 SV=2[more]
A0A061GU17_THECC1.2e-8367.22RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 S... [more]
A0A061GZE8_THECC1.3e-8267.22RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040934 PE=4 S... [more]
BLAST of Cp4.1LG05g04790 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19430.11.2e-6856.73 RING/U-box superfamily protein[more]
AT5G12310.17.8e-6355.97 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG05g04790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444871|ref|XP_004140197.1|5.7e-10882.79PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus][more]
gi|778716917|ref|XP_011657615.1|5.7e-10882.79PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus][more]
gi|659097505|ref|XP_008449663.1|4.8e-10781.89PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo][more]
gi|659097507|ref|XP_008449664.1|4.8e-10781.89PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo][more]
gi|595899827|ref|XP_007213836.1|3.6e-8670.82hypothetical protein PRUPE_ppa010547mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g04790.1Cp4.1LG05g04790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 46..89
score: 7.
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 46..88
score: 7.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 46..89
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 43..96
score: 4.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 64..73
scor
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 40..96
score: 1.66

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g04790Cucsa.087010Cucumber (Gy14) v1cgycpeB0161
Cp4.1LG05g04790CmaCh20G001100Cucurbita maxima (Rimu)cmacpeB586
Cp4.1LG05g04790CmaCh02G012750Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g04790CmoCh02G013160Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g04790CmoCh20G001190Cucurbita moschata (Rifu)cmocpeB535
Cp4.1LG05g04790Cla008576Watermelon (97103) v1cpewmB723
Cp4.1LG05g04790Csa6G431760Cucumber (Chinese Long) v2cpecuB742
Cp4.1LG05g04790MELO3C014562Melon (DHL92) v3.5.1cpemeB696
Cp4.1LG05g04790ClCG02G022870Watermelon (Charleston Gray)cpewcgB644
Cp4.1LG05g04790CSPI06G23870Wild cucumber (PI 183967)cpecpiB744
Cp4.1LG05g04790Lsi10G010890Bottle gourd (USVL1VR-Ls)cpelsiB598
Cp4.1LG05g04790MELO3C014562.2Melon (DHL92) v3.6.1cpemedB829
Cp4.1LG05g04790CsaV3_6G039010Cucumber (Chinese Long) v3cpecucB0921
Cp4.1LG05g04790Bhi10G000198Wax gourdcpewgoB0944
Cp4.1LG05g04790CsGy6G023220Cucumber (Gy14) v2cgybcpeB845
Cp4.1LG05g04790Carg02689Silver-seed gourdcarcpeB1283
Cp4.1LG05g04790Carg06878Silver-seed gourdcarcpeB0741
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG05g04790Cp4.1LG16g08580Cucurbita pepo (Zucchini)cpecpeB310
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g04790Cucumber (Chinese Long) v3cpecucB0877
Cp4.1LG05g04790Cucurbita pepo (Zucchini)cpecpeB369
Cp4.1LG05g04790Cucurbita pepo (Zucchini)cpecpeB493
Cp4.1LG05g04790Cucurbita maxima (Rimu)cmacpeB098
Cp4.1LG05g04790Cucurbita maxima (Rimu)cmacpeB158
Cp4.1LG05g04790Cucurbita moschata (Rifu)cmocpeB074
Cp4.1LG05g04790Cucurbita moschata (Rifu)cmocpeB134
Cp4.1LG05g04790Cucumber (Gy14) v2cgybcpeB137