Cp4.1LG16g08580 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g08580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RING/U-box superfamily protein
Location	Cp4.1LG16 : 8157994 .. 8160563 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGGAAAACCCCAATGTCGGTTGAAGCTAAATTACGTAAAAAGGTTTAGAATAAAACAAGGGAAGTAATTTGGGTCAAAAGAAATCAAATTTGACTATGAACATATAACCCTGAACTTAATATAAAGAGGCTTAATCTTCACAAGTTCTCATTTTTTCACCAAGAACTCTTTGGATCTCGAGTAGATAATATTTTCGAGCATCTGTTATTTTCTCTTCTGGTTCAGAATAATTCTCAGCATCGCCATTCTTTTCAAAGTTTTGATTTGTGCTGAAGAACTGTTCGCGTCCTGTGTAATCTAAAGCGAGAAAGATCGGAGGAGAAACCCTCGCGTACTCGCTATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTTTTATTCTTTCTCTTCATTTCGAAGTTGATATACTTTCACAAACTTTCTTTATCGTAGAAAATCAGCGGCGTAAAACTTGGCATGAGAATGGTCGTCTCCGATTTGTGTTGATTTAGTCTTGTTGTCATCCATTTTCAAGATTTGCTTTTCTGGGGGGCTAATTGAAGTCTGAGATCGTCGGTTCAGTCTTGTTTTCTTTCATTGTCTAGATTACGCACATCGGGAGGCTTGTTTTCTGCGTTTATCATCTAGGAAGAATATGGTTAAAACGAATTGAATTGATGTTTGTACCATAAGAAGCAGGAGCAATTGTTTATGTTTATCCGACTGCCAGTTTGAATTGCTTCGTCTCCCACTTGCGAATTTGGTCGATCTCCTGCGCATGCTTATTTATTTTTTGAAAACCTTCCTCTGTTGCAGTCAGAGTTGCATATCTATGATTCTGTTGGTCTTTTTCAATTATTCGCGCATACATACTTCGAGGATTGCTAACTTGCTGTACTTGCACGTTCAGGTGGAAATGTGGAAGAAGTTAGAAATTCAAGGGACCGGGCATGGGAGCCATGATGGCGCTTGTGCAATTTGCTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGGTTAGTTCTAATGGATTAATCTTTTGTCTACTAATTAATGTTTTTTATGGAATGACTTTCACCTGCTTCAATACATTAGGTAATTGTTGATCTGTTTCTTTCCAGTATTTGTATGGGAATCCTTTTTGCAGTCAAATGTTGAAGTTCTATAGATGGTGTAATTCTAATGCCTGCTTTTATCATTTATATTTCATTTTGTTGCGACTATATGCTTGTAATGGAGATGGAGTGTAAAGTTCTTGCGAACATATATTCCTGGGACTCTGCTAAACTTTGTGGGAGAAAATTCAATGTATCCATATCGTCTTTTGTGCAATGTTTCTAATATTACTTGAGGTTGTTCGGATTTAATTGAAGAGGTATGCTGTTCTAGGCTTATAACCAAAGCATCTTGGAGTTGGGAAATTGTATGGTACTGAGCCTAATGGTTAATCTATAGTTTGATGTTCTTTGAAAGTTATGTCAGAAACTAGCAGAAGTCATTATATAGAAGTTAAAATGCTTGCTTGGTGGGACTTGGATAGAAATTTATTGTTCTTTGAAGCATTAGAAATTTTGTCCTTGTTTGTTTGTGGAATGAAGGTGACCTTTTATAGCTGTGCATATGGGCGTTGTCTTATTTTGTTTCATCTTTCTTTAACTTTCATGAAGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTTGACGGGAGGTATGTCCATTCATCGTTCTATGGACCTTTGATAGTTTAGAGTTTGAACTCTAGGTGGCCTGGTATCTTTTTTAAATTACTGTTCTTACTATATATTGCTTGTGCATTGTTTAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAACTTTATGTCGAGCTCCTGTATAGAAATAAGCCCTGCGCTTGACCTTGTGTACAGTTTCTAAGGTTCATTTTAGTTTGCTGGGCGATGTGCCTTACCAGATGCTGGTAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATTATAAACATTGGCTCTCAAAAGTAATCATAAAAGTATTAAAACTTTA

mRNA sequence

ATGGATGGGAAAACCCCAATGTCGGTTGAAGCTAAATTACGTAAAAAGGTTTAGAATAAAACAAGGGAAGTAATTTGGGTCAAAAGAAATCAAATTTGACTATGAACATATAACCCTGAACTTAATATAAAGAGGCTTAATCTTCACAAGTTCTCATTTTTTCACCAAGAACTCTTTGGATCTCGAGTAGATAATATTTTCGAGCATCTGTTATTTTCTCTTCTGGTTCAGAATAATTCTCAGCATCGCCATTCTTTTCAAAGTTTTGATTTGTGCTGAAGAACTGTTCGCGTCCTGTGTAATCTAAAGCGAGAAAGATCGGAGGAGAAACCCTCGCGTACTCGCTATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTGGAAATGTGGAAGAAGTTAGAAATTCAAGGGACCGGGCATGGGAGCCATGATGGCGCTTGTGCAATTTGCTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAACTTTATGTCGAGCTCCTGTATAGAAATAAGCCCTGCGCTTGACCTTGTGTACAGTTTCTAAGGTTCATTTTAGTTTGCTGGGCGATGTGCCTTACCAGATGCTGGTAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATTATAAACATTGGCTCTCAAAAGTAATCATAAAAGTATTAAAACTTTA

Coding sequence (CDS)

ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTGGAAATGTGGAAGAAGTTAGAAATTCAAGGGACCGGGCATGGGAGCCATGATGGCGCTTGTGCAATTTGCTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAA

Protein sequence

MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN

Homology

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BLAST of Cp4.1LG16g08580 vs. TrEMBL
Match: A0A0A0KK15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 3.7e-114
Identity = 208/240 (86.67%), Postives = 223/240 (92.92%), Query Frame = 1


Query: 2   TSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   CDQ+EM KK+EIQGTGHGSHDGACAICLNKI+L ETALV
Sbjct: 35  TSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 94

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 95  RGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 154

Query: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGR 181
           WY+P I+++REETYDDPE  +YYPYED DEELE+AYLG SPSLRIGNRRWG NGYVRAGR
Sbjct: 155 WYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 214

Query: 182 QEARPVLRPEFSGASSSREPPTKDA-SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 239
           QEARPVLR EF+G SSSREP TK A SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 215 QEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 274

[Close]

BLAST of Cp4.1LG16g08580 vs. TrEMBL
Match: A0A061GU17_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-85
Identity = 163/238 (68.49%), Postives = 192/238 (80.67%), Query Frame = 1


Query: 3   SSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVR 62
           +S I + + ++ +A+ +L + DQ EM  K  +   G  +H G CAICL+KI L ETALV+
Sbjct: 2   TSVIKIDAEQIVNALPNLSLQDQKEMKNKGAVGEEGCENHSGICAICLDKIVLQETALVK 61

Query: 63  GCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 122
           GCEHAYC TCILRWA+Y++ PTCPQCKHPFEFL VHRSLDG I+DYMFEESVCLLLRA+W
Sbjct: 62  GCEHAYCVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAW 121

Query: 123 YEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEA 182
           +EPLIV+DREE YDD E+YYPYE+ D++ +EAY  +SPSLRIGNRRWGDNGYVR+GRQEA
Sbjct: 122 FEPLIVEDREELYDDLEDYYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQEA 181

Query: 183 RPVLRPEF--SGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 239
           RPV R  F  SGA SSREP  K+ +K   GRRAKRALKREAADKAAAAKHQEHL R G
Sbjct: 182 RPVQRSNFQDSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHLMRLG 238

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BLAST of Cp4.1LG16g08580 vs. TrEMBL
Match: M5X7I0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.6e-85
Identity = 164/230 (71.30%), Postives = 187/230 (81.30%), Query Frame = 1


Query: 13  LSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYCTTC 72
           LSD +       Q EM    +      G+H G CAICL++I L ETALV+GCEHAYC TC
Sbjct: 14  LSDLINSSTQQHQGEMQSNTDNVEKRCGNHGGVCAICLDEIMLQETALVKGCEHAYCATC 73

Query: 73  ILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDRE 132
           ILRW +Y+QKPTCPQCKHPFEFL VHRSLDGSIHDYMFEESVCLLLRA W+EPLIV++RE
Sbjct: 74  ILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLRAKWFEPLIVEERE 133

Query: 133 ETYDDPEE-YYPYED-QDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRP-- 192
           + YDDP++ YYPYED +D++L+EAY  +S S+RIGNRRWGDNGYVR GRQEARPV R   
Sbjct: 134 DVYDDPDDYYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYVRGGRQEARPVNRSNI 193

Query: 193 EFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 239
           E SGASSSREP  K+A+ DKTGRRAKRALKREAADKAAAAKHQ+HLAR G
Sbjct: 194 EDSGASSSREPRKKEAAMDKTGRRAKRALKREAADKAAAAKHQQHLARLG 243

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BLAST of Cp4.1LG16g08580 vs. TrEMBL
Match: V4UB94_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016417mg PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 6.1e-85
Identity = 163/242 (67.36%), Postives = 187/242 (77.27%), Query Frame = 1


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           MTSS   +   EL   + +L + DQ EM  K + +  G G+H G CAICL+K  L ETAL
Sbjct: 1   MTSSVSKIDGEELVKGLDNLSISDQGEMQSKADNREMGFGNHGGVCAICLDKTVLQETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           V+GCEHAYC TCILRWASY + PTCPQCKHPFEFL VHRSLDGSI DYMFEESVCLLLRA
Sbjct: 61  VKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           +W++PLIV+D     DD E+ Y YED++++L+E Y  +S SLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 TWFKPLIVEDHVVVQDDLEDDYSYEDEEDDLDEVYFRSSSSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFS--GASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 240
           EARPV RP     GASSSREP  K+ +K  TGRRAKRALKREAADKAAAAKHQ+HLAR G
Sbjct: 181 EARPVCRPNSQDVGASSSREPKKKEVAKVTTGRRAKRALKREAADKAAAAKHQQHLARLG 240

[Close]

BLAST of Cp4.1LG16g08580 vs. TrEMBL
Match: A0A061GZE8_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 3.0e-84
Identity = 163/238 (68.49%), Postives = 192/238 (80.67%), Query Frame = 1


Query: 3   SSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVR 62
           +S I + + ++ +A+ +L + DQ EM  K  +   G  +H G CAICL+KI L ETALV+
Sbjct: 2   TSVIKIDAEQIVNALPNLSLQDQ-EMKNKGAVGEEGCENHSGICAICLDKIVLQETALVK 61

Query: 63  GCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 122
           GCEHAYC TCILRWA+Y++ PTCPQCKHPFEFL VHRSLDG I+DYMFEESVCLLLRA+W
Sbjct: 62  GCEHAYCVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAW 121

Query: 123 YEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEA 182
           +EPLIV+DREE YDD E+YYPYE+ D++ +EAY  +SPSLRIGNRRWGDNGYVR+GRQEA
Sbjct: 122 FEPLIVEDREELYDDLEDYYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQEA 181

Query: 183 RPVLRPEF--SGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 239
           RPV R  F  SGA SSREP  K+ +K   GRRAKRALKREAADKAAAAKHQEHL R G
Sbjct: 182 RPVQRSNFQDSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHLMRLG 237

[Close]

BLAST of Cp4.1LG16g08580 vs. TAIR10
Match: AT5G19430.1 (AT5G19430.1 RING/U-box superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-67
Identity = 141/254 (55.51%), Postives = 177/254 (69.69%), Query Frame = 1


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           M+S    +   ++ D +QDL + +Q +   + EI     G+H G CAICL++I L ETA+
Sbjct: 1   MSSVTEIVSEQQVIDGIQDLALQNQDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAM 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           V+GCEH YC TCILRWAS  + PTCPQCKHPF+FL VHR+LDGSI D++FEESVCLLLRA
Sbjct: 61  VKGCEHTYCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREE----TYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVR 180
           SW+ PL V ++       +DD +  Y YED+D++L+E YL  S SLRIGNRRWG NG+VR
Sbjct: 121 SWFVPLDVVEQASYSHGYHDDFDIPYDYEDEDDDLDEFYLHGS-SLRIGNRRWGGNGFVR 180

Query: 181 AGRQEARPVLRPEFSGA-------SSSREPPTKDA-SKDKTGRRAKRALKREAADKA--- 239
           +GRQEARPV R   SG+       SSS EP  K   + + TGRRAKRA+KREAA+KA   
Sbjct: 181 SGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEV 240

[Close]

BLAST of Cp4.1LG16g08580 vs. TAIR10
Match: AT5G12310.1 (AT5G12310.1 RING/U-box superfamily protein)

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-64
Identity = 133/240 (55.42%), Postives = 160/240 (66.67%), Query Frame = 1


Query: 17  VQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYCTTCILRW 76
           V  L + DQ E            G+H G CAICL+ I L ETA+V+GCEHAYC TCILRW
Sbjct: 14  VDVLPLQDQDEKKTPQVFNELSFGNHGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRW 73

Query: 77  ASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDR----- 136
           ASY +KPTCPQCK PF+FL VHR+LDGS+ D+MFEESVCLLLRASW++PL   +R     
Sbjct: 74  ASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMFEESVCLLLRASWFQPLEAVERVSDND 133

Query: 137 --EETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRPE 196
                +D P EY   ++ D++L+E Y+  S SLR+GNRRWGDNG+VRAGRQEARPV    
Sbjct: 134 NFNYDFDIPPEYEEEDEDDDDLDEFYMQGS-SLRLGNRRWGDNGFVRAGRQEARPVQHKN 193

Query: 197 FSGASSSREP-------PTKDASKDKTGRRAKRALKREAADKA----AAAKHQEHLARFG 239
             G +S  EP       P +  S   TGRRAKRA+KREAA+KA    AAAKH+  L R G
Sbjct: 194 RGGQASGSEPASSSSCEPKEKTSSAITGRRAKRAMKREAANKAAEAVAAAKHEALLVRLG 252

[Close]

BLAST of Cp4.1LG16g08580 vs. NCBI nr
Match: gi|449444871|ref|XP_004140197.1| (PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus])

HSP 1 Score: 419.1 bits (1076), Expect = 5.3e-114
Identity = 208/240 (86.67%), Postives = 223/240 (92.92%), Query Frame = 1


Query: 2   TSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   CDQ+EM KK+EIQGTGHGSHDGACAICLNKI+L ETALV
Sbjct: 35  TSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 94

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 95  RGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 154

Query: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGR 181
           WY+P I+++REETYDDPE  +YYPYED DEELE+AYLG SPSLRIGNRRWG NGYVRAGR
Sbjct: 155 WYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 214

Query: 182 QEARPVLRPEFSGASSSREPPTKDA-SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 239
           QEARPVLR EF+G SSSREP TK A SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 215 QEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 274

[Close]

BLAST of Cp4.1LG16g08580 vs. NCBI nr
Match: gi|778716917|ref|XP_011657615.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus])

HSP 1 Score: 419.1 bits (1076), Expect = 5.3e-114
Identity = 208/240 (86.67%), Postives = 223/240 (92.92%), Query Frame = 1


Query: 2   TSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   CDQ+EM KK+EIQGTGHGSHDGACAICLNKI+L ETALV
Sbjct: 3   TSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 62

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 63  RGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 122

Query: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGR 181
           WY+P I+++REETYDDPE  +YYPYED DEELE+AYLG SPSLRIGNRRWG NGYVRAGR
Sbjct: 123 WYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 182

Query: 182 QEARPVLRPEFSGASSSREPPTKDA-SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 239
           QEARPVLR EF+G SSSREP TK A SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 183 QEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 242

[Close]

BLAST of Cp4.1LG16g08580 vs. NCBI nr
Match: gi|659097505|ref|XP_008449663.1| (PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo])

HSP 1 Score: 413.3 bits (1061), Expect = 2.9e-112
Identity = 206/240 (85.83%), Postives = 221/240 (92.08%), Query Frame = 1


Query: 2   TSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   C Q+EM KK+EIQGTGHGSHDGACAICLNKI+L ETALV
Sbjct: 35  TSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 94

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 95  RGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 154

Query: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGR 181
           WY+PLI ++REETYD+PE  +YY YED DEELE+AYLG SPSLRIGNRRWG NGYVRAGR
Sbjct: 155 WYKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 214

Query: 182 QEARPVLRPEFSGA-SSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 239
           QEARPVLR EF+G  SSSR+P TK ASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 215 QEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 274

[Close]

BLAST of Cp4.1LG16g08580 vs. NCBI nr
Match: gi|659097507|ref|XP_008449664.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo])

HSP 1 Score: 413.3 bits (1061), Expect = 2.9e-112
Identity = 206/240 (85.83%), Postives = 221/240 (92.08%), Query Frame = 1


Query: 2   TSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   C Q+EM KK+EIQGTGHGSHDGACAICLNKI+L ETALV
Sbjct: 3   TSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 62

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 63  RGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 122

Query: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGR 181
           WY+PLI ++REETYD+PE  +YY YED DEELE+AYLG SPSLRIGNRRWG NGYVRAGR
Sbjct: 123 WYKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 182

Query: 182 QEARPVLRPEFSGA-SSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 239
           QEARPVLR EF+G  SSSR+P TK ASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 183 QEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 242

[Close]

BLAST of Cp4.1LG16g08580 vs. NCBI nr
Match: gi|590584842|ref|XP_007015289.1| (RING/U-box superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 323.9 bits (829), Expect = 2.3e-85
Identity = 163/238 (68.49%), Postives = 192/238 (80.67%), Query Frame = 1


Query: 3   SSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVR 62
           +S I + + ++ +A+ +L + DQ EM  K  +   G  +H G CAICL+KI L ETALV+
Sbjct: 2   TSVIKIDAEQIVNALPNLSLQDQKEMKNKGAVGEEGCENHSGICAICLDKIVLQETALVK 61

Query: 63  GCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 122
           GCEHAYC TCILRWA+Y++ PTCPQCKHPFEFL VHRSLDG I+DYMFEESVCLLLRA+W
Sbjct: 62  GCEHAYCVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAW 121

Query: 123 YEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEA 182
           +EPLIV+DREE YDD E+YYPYE+ D++ +EAY  +SPSLRIGNRRWGDNGYVR+GRQEA
Sbjct: 122 FEPLIVEDREELYDDLEDYYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQEA 181

Query: 183 RPVLRPEF--SGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 239
           RPV R  F  SGA SSREP  K+ +K   GRRAKRALKREAADKAAAAKHQEHL R G
Sbjct: 182 RPVQRSNFQDSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHLMRLG 238

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g08580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g08580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK15_CUCSA	3.7e-114	86.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1	[more]
A0A061GU17_THECC	1.6e-85	68.49	RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 S...	[more]
M5X7I0_PRUPE	1.6e-85	71.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1	[more]
V4UB94_9ROSI	6.1e-85	67.36	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016417mg PE=4 SV=1	[more]
A0A061GZE8_THECC	3.0e-84	68.49	RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040934 PE=4 S...	[more]

BLAST of Cp4.1LG16g08580 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19430.1	1.4e-67	55.51	RING/U-box superfamily protein	[more]
AT5G12310.1	3.1e-64	55.42	RING/U-box superfamily protein	[more]

BLAST of Cp4.1LG16g08580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444871\|ref\|XP_004140197.1\|	5.3e-114	86.67	PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus]	[more]
gi\|778716917\|ref\|XP_011657615.1\|	5.3e-114	86.67	PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus]	[more]
gi\|659097505\|ref\|XP_008449663.1\|	2.9e-112	85.83	PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo]	[more]
gi\|659097507\|ref\|XP_008449664.1\|	2.9e-112	85.83	PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo]	[more]
gi\|590584842\|ref\|XP_007015289.1\|	2.3e-85	68.49	RING/U-box superfamily protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017907	Znf_RING_CS
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g08580.1	Cp4.1LG16g08580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 45..89 score: 6.
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 46..88 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 46..89 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 43..96 score: 6.7
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 64..73 scor
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 45..96 score: 1.96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g08580	Cucsa.087010	Cucumber (Gy14) v1	cgycpeB0160
Cp4.1LG16g08580	CmaCh20G001100	Cucurbita maxima (Rimu)	cmacpeB564
Cp4.1LG16g08580	CmaCh02G012750	Cucurbita maxima (Rimu)	cmacpeB627
Cp4.1LG16g08580	CmoCh02G013160	Cucurbita moschata (Rifu)	cmocpeB576
Cp4.1LG16g08580	CmoCh20G001190	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g08580	Cla008576	Watermelon (97103) v1	cpewmB287
Cp4.1LG16g08580	Csa6G431760	Cucumber (Chinese Long) v2	cpecuB281
Cp4.1LG16g08580	MELO3C014562	Melon (DHL92) v3.5.1	cpemeB278
Cp4.1LG16g08580	ClCG02G022870	Watermelon (Charleston Gray)	cpewcgB255
Cp4.1LG16g08580	CSPI06G23870	Wild cucumber (PI 183967)	cpecpiB283
Cp4.1LG16g08580	Lsi10G010890	Bottle gourd (USVL1VR-Ls)	cpelsiB227
Cp4.1LG16g08580	MELO3C014562.2	Melon (DHL92) v3.6.1	cpemedB324
Cp4.1LG16g08580	CsaV3_6G039010	Cucumber (Chinese Long) v3	cpecucB0348
Cp4.1LG16g08580	Bhi10G000198	Wax gourd	cpewgoB0354
Cp4.1LG16g08580	CsGy6G023220	Cucumber (Gy14) v2	cgybcpeB755
Cp4.1LG16g08580	Carg02689	Silver-seed gourd	carcpeB1273
Cp4.1LG16g08580	Carg06878	Silver-seed gourd	carcpeB0733

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG16g08580	Cp4.1LG05g04790	Cucurbita pepo (Zucchini)	cpecpeB310

The following block(s) are covering this gene:

None