CmaCh20G001100 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G001100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RING finger-like protein
Location	Cma_Chr20 : 514216 .. 516591 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAGATAATATTTTCGAGCATCTGTTATTTTCTCTTCTGGTTCAGAATAATTCTCATCATCGCCTTTCTTTTCAAAGTTTTGATTTGTGCTGAAGAACTGTTCGCGTCCTGTGTAATCTAAAGCGAGAAAGATCGGAGGAGAAACCCTCGCGTACTCGCTATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTTTCATTCTCTCTCTTCATTTCGAAGTTGATATACTTTCACGAACTTTCTTTATCGTATAAAATCAGCGGCGTAAAACTTGGCGTGGGAATGGTCGTCTCCGATTTGTGTTGAGAGTTTTAATTAGAAGATTTGTTTTGATTTAGTCTCGTTGTCATTCATTTTCAAGATTTGCTTTTCTGGGGGGCTTATTGAAGTCTGAGATCGTCGGTTCAGTCTTGTTTTCTTTCATTGTCTAGATTACGCACATCGGGAGGCTTGCTTTCTGCGTTTATCATCTAGGAAGAATATGGTTAAAACGAATTGAATTCATGTTTGTACCATAAGAAGCAGAAGCAATTGTTTGTGTTTATCCGACTGCCAGTTTGGATTGCTTCGTCTCCCACTTGCGAATTTGGTCGATCTCCTGCGCATGCTTATTTATTTTATGAAAACCTTCCTCTGTTGCAATCAGAGTTGCATATCTATGATTCTGTTGGTCTTTTTTCAATTATTTGCGCATACATACTTCGAGGATTGCCAACTTGCTGTACTTGCACGTTCAGGAGGAAATGTGGAAGAAGTTAGAAATGCAAAGAACAGGGCATGGGAGTCATGGCTCATGTGCAATTTGCTTAAATAAAATATCTCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGGTTAGTTCTAATTGATTAATCTTTTGTCTACTAATTAATGTTTTTTATGGAATGACTTTCACCTGCTTCAATACATTAGGTAATTGTTGATCTGTTTCTTTCCAGTATTTGTATGGGAATCCTTTTTGCAGTTAAATGTTGAAGTTCTATAGATGGTGTAATTCTAATGCCTGCTTTTATCATTTTTATTTCATTTTGTTGCGACTATATGCTTGTAATGGAGATGGAGTGTAAAGTTCTTGCGAACATATATTCCCGGGACTCTGCTAAACTTTGTGGGAGAAAATTCAATGTATCCATATTGTCTTTTGTGCAATGTTTCTAATATTACTTGAGGTTGTTCGGGTTTAATTGAAGAGGTATGCTGTTCTAGGCTTATAACCAAAGCATCTTGGAGTAAGGAAATTGTATGGTACTGAGCCTAATGGAATCTATAGTTTGATTTTCTTTGAAATGCTTGCTTGATGAGACTTGGATAGAAATTTGTTGTTCTTTGAAGCATTAGAAATTTTGTCCTTGTTTGTTTGTGGAATGAAGGTGACCTTTTTATAGCTGTGCATATGGGCGTTATCTTATTTTGTTTCATCTTTCTTTTACTTTCATGAAGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACTTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTGGACGGGAGGTATGTCCTTTCATCGTTTTATGGACCTTTCATCGTTCTCTTGACGGGAGTTTGAACTCTAGGTGGCCTGGTACCTTTTTTAAGTTTCCGTTCTTACAATATATTGTTTGTGCATTGTTTAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTAAGAGCTTCGTGGTATGAGCCACTGATTGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGATTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGTTACGTAAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTACGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAACTTTATGTCGTGCTCCTGTATAGAAATAAGCCTGCGCTTGACCTTGTGTACAGTTTCTAAGATTCATTTTAGTTTGCTGGGCGATGTGCTTTACCAGATGCTGGTAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATAAACATTGGCTCTCAAAAGTAATCATAAAAGTAATAAAACTTTACCAATC

mRNA sequence

AGTAGATAATATTTTCGAGCATCTGTTATTTTCTCTTCTGGTTCAGAATAATTCTCATCATCGCCTTTCTTTTCAAAGTTTTGATTTGTGCTGAAGAACTGTTCGCGTCCTGTGTAATCTAAAGCGAGAAAGATCGGAGGAGAAACCCTCGCGTACTCGCTATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGAGGAAATGTGGAAGAAGTTAGAAATGCAAAGAACAGGGCATGGGAGTCATGGCTCATGTGCAATTTGCTTAAATAAAATATCTCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACTTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTGGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTAAGAGCTTCGTGGTATGAGCCACTGATTGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGATTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGTTACGTAAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTACGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAACTTTATGTCGTGCTCCTGTATAGAAATAAGCCTGCGCTTGACCTTGTGTACAGTTTCTAAGATTCATTTTAGTTTGCTGGGCGATGTGCTTTACCAGATGCTGGTAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATAAACATTGGCTCTCAAAAGTAATCATAAAAGTAATAAAACTTTACCAATC

Coding sequence (CDS)

ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGAGGAAATGTGGAAGAAGTTAGAAATGCAAAGAACAGGGCATGGGAGTCATGGCTCATGTGCAATTTGCTTAAATAAAATATCTCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACTTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTGGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTAAGAGCTTCGTGGTATGAGCCACTGATTGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGATTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGTTACGTAAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTACGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAA

Protein sequence

MTSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSHGSCAICLNKISLPETALVRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQEARPVLRPEFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN

Homology

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BLAST of CmaCh20G001100 vs. TrEMBL
Match: A0A0A0KK15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 5.5e-110
Identity = 204/240 (85.00%), Postives = 221/240 (92.08%), Query Frame = 1


Query: 2   TSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSH-GSCAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   CDQ EM KK+E+Q TGHGSH G+CAICLNKI+L ETALV
Sbjct: 35  TSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 94

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 95  RGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 154

Query: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGR 181
           WY+P I+++REETYDDPE  +YYPYED DEELE+AYLG+SPSLRIGNRRWG NGYVRAGR
Sbjct: 155 WYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 214

Query: 182 QEARPVLRPEFSGASSSREPTTKDA-SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 238
           QEARPVLR EF+G SSSREP TK A SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 215 QEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 274

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BLAST of CmaCh20G001100 vs. TrEMBL
Match: M5X7I0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 3.0e-84
Identity = 164/230 (71.30%), Postives = 186/230 (80.87%), Query Frame = 1


Query: 13  LSDAVQDLKVCDQEEMWKKLEMQRTGHGSHGS-CAICLNKISLPETALVRGCEHAYCTTC 72
           LSD +       Q EM    +      G+HG  CAICL++I L ETALV+GCEHAYC TC
Sbjct: 14  LSDLINSSTQQHQGEMQSNTDNVEKRCGNHGGVCAICLDEIMLQETALVKGCEHAYCATC 73

Query: 73  ILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDRE 132
           ILRW +Y+QKPTCPQCKHPFEFL VHRSLDGSIHDYMFEESVCLLLRA W+EPLIV++RE
Sbjct: 74  ILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLRAKWFEPLIVEERE 133

Query: 133 ETYDDPEE-YYPYED-QDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQEARPVLRP-- 192
           + YDDP++ YYPYED +D++L+EAY   S S+RIGNRRWGDNGYVR GRQEARPV R   
Sbjct: 134 DVYDDPDDYYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYVRGGRQEARPVNRSNI 193

Query: 193 EFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 238
           E SGASSSREP  K+A+ DKTGRRAKRALKREAADKAAAAKHQ+HLAR G
Sbjct: 194 EDSGASSSREPRKKEAAMDKTGRRAKRALKREAADKAAAAKHQQHLARLG 243

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BLAST of CmaCh20G001100 vs. TrEMBL
Match: A0A061GU17_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.1e-83
Identity = 163/238 (68.49%), Postives = 192/238 (80.67%), Query Frame = 1


Query: 3   SSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSH-GSCAICLNKISLPETALVR 62
           +S I + + ++ +A+ +L + DQ+EM  K  +   G  +H G CAICL+KI L ETALV+
Sbjct: 2   TSVIKIDAEQIVNALPNLSLQDQKEMKNKGAVGEEGCENHSGICAICLDKIVLQETALVK 61

Query: 63  GCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 122
           GCEHAYC TCILRWA+Y++ PTCPQCKHPFEFL VHRSLDG I+DYMFEESVCLLLRA+W
Sbjct: 62  GCEHAYCVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAW 121

Query: 123 YEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQEA 182
           +EPLIV+DREE YDD E+YYPYE+ D++ +EAY   SPSLRIGNRRWGDNGYVR+GRQEA
Sbjct: 122 FEPLIVEDREELYDDLEDYYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQEA 181

Query: 183 RPVLRPEF--SGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 238
           RPV R  F  SGA SSREP  K+ +K   GRRAKRALKREAADKAAAAKHQEHL R G
Sbjct: 182 RPVQRSNFQDSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHLMRLG 238

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BLAST of CmaCh20G001100 vs. TrEMBL
Match: V4UB94_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016417mg PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.5e-83
Identity = 163/242 (67.36%), Postives = 186/242 (76.86%), Query Frame = 1


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSHGS-CAICLNKISLPETAL 60
           MTSS   +   EL   + +L + DQ EM  K + +  G G+HG  CAICL+K  L ETAL
Sbjct: 1   MTSSVSKIDGEELVKGLDNLSISDQGEMQSKADNREMGFGNHGGVCAICLDKTVLQETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           V+GCEHAYC TCILRWASY + PTCPQCKHPFEFL VHRSLDGSI DYMFEESVCLLLRA
Sbjct: 61  VKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQ 180
           +W++PLIV+D     DD E+ Y YED++++L+E Y   S SLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 TWFKPLIVEDHVVVQDDLEDDYSYEDEEDDLDEVYFRSSSSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFS--GASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 240
           EARPV RP     GASSSREP  K+ +K  TGRRAKRALKREAADKAAAAKHQ+HLAR G
Sbjct: 181 EARPVCRPNSQDVGASSSREPKKKEVAKVTTGRRAKRALKREAADKAAAAKHQQHLARLG 240

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BLAST of CmaCh20G001100 vs. TrEMBL
Match: A0A067EV95_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025685mg PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-82
Identity = 161/242 (66.53%), Postives = 185/242 (76.45%), Query Frame = 1


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSHGS-CAICLNKISLPETAL 60
           M SS   +   EL   + +L + DQ EM  K + +  G G+HG  CAICL+K  L ETAL
Sbjct: 1   MASSVSKIDGEELVKGLDNLSISDQGEMQSKADNREMGFGNHGGVCAICLDKTVLQETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           V+GCEHAYC TCILRWASY + PTCPQCKHPFEFL VHRSLDGSI DYMFEESVCLLLRA
Sbjct: 61  VKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQ 180
           +W++PLIV+D     DD E+ Y YED++++L+E Y   S SLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 TWFKPLIVEDHVVVQDDLEDDYSYEDEEDDLDEVYFRSSSSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFS--GASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 240
           EARPV RP     GASSSREP  K+ +K  TGRRAKRALKREAADKAAA+KHQ+HLAR G
Sbjct: 181 EARPVCRPNSQDVGASSSREPKKKEVAKVTTGRRAKRALKREAADKAAASKHQQHLARLG 240

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BLAST of CmaCh20G001100 vs. TAIR10
Match: AT5G19430.1 (AT5G19430.1 RING/U-box superfamily protein)

HSP 1 Score: 248.8 bits (634), Expect = 3.3e-66
Identity = 140/254 (55.12%), Postives = 178/254 (70.08%), Query Frame = 1


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSHGSC-AICLNKISLPETAL 60
           M+S    +   ++ D +QDL + +Q++   + E+     G+HG C AICL++I L ETA+
Sbjct: 1   MSSVTEIVSEQQVIDGIQDLALQNQDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAM 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           V+GCEH YC TCILRWAS  + PTCPQCKHPF+FL VHR+LDGSI D++FEESVCLLLRA
Sbjct: 61  VKGCEHTYCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREE----TYDDPEEYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVR 180
           SW+ PL V ++       +DD +  Y YED+D++L+E YL  S SLRIGNRRWG NG+VR
Sbjct: 121 SWFVPLDVVEQASYSHGYHDDFDIPYDYEDEDDDLDEFYLHGS-SLRIGNRRWGGNGFVR 180

Query: 181 AGRQEARPVLRPEFSGA-------SSSREPTTKDA-SKDKTGRRAKRALKREAADKA--- 238
           +GRQEARPV R   SG+       SSS EP  K   + + TGRRAKRA+KREAA+KA   
Sbjct: 181 SGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEV 240

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BLAST of CmaCh20G001100 vs. TAIR10
Match: AT5G12310.1 (AT5G12310.1 RING/U-box superfamily protein)

HSP 1 Score: 239.2 bits (609), Expect = 2.6e-63
Identity = 132/240 (55.00%), Postives = 162/240 (67.50%), Query Frame = 1


Query: 17  VQDLKVCDQEEMWKKLEMQRTGHGSHGSC-AICLNKISLPETALVRGCEHAYCTTCILRW 76
           V  L + DQ+E            G+HG C AICL+ I L ETA+V+GCEHAYC TCILRW
Sbjct: 14  VDVLPLQDQDEKKTPQVFNELSFGNHGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRW 73

Query: 77  ASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDR----- 136
           ASY +KPTCPQCK PF+FL VHR+LDGS+ D+MFEESVCLLLRASW++PL   +R     
Sbjct: 74  ASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMFEESVCLLLRASWFQPLEAVERVSDND 133

Query: 137 --EETYDDPEEYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQEARPVLRPE 196
                +D P EY   ++ D++L+E Y+  S SLR+GNRRWGDNG+VRAGRQEARPV    
Sbjct: 134 NFNYDFDIPPEYEEEDEDDDDLDEFYMQGS-SLRLGNRRWGDNGFVRAGRQEARPVQHKN 193

Query: 197 FSGASSSREPTTKDASKDK-------TGRRAKRALKREAADKA----AAAKHQEHLARFG 238
             G +S  EP +  + + K       TGRRAKRA+KREAA+KA    AAAKH+  L R G
Sbjct: 194 RGGQASGSEPASSSSCEPKEKTSSAITGRRAKRAMKREAANKAAEAVAAAKHEALLVRLG 252

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BLAST of CmaCh20G001100 vs. NCBI nr
Match: gi|778716917|ref|XP_011657615.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 7.8e-110
Identity = 204/240 (85.00%), Postives = 221/240 (92.08%), Query Frame = 1


Query: 2   TSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSH-GSCAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   CDQ EM KK+E+Q TGHGSH G+CAICLNKI+L ETALV
Sbjct: 3   TSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 62

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 63  RGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 122

Query: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGR 181
           WY+P I+++REETYDDPE  +YYPYED DEELE+AYLG+SPSLRIGNRRWG NGYVRAGR
Sbjct: 123 WYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 182

Query: 182 QEARPVLRPEFSGASSSREPTTKDA-SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 238
           QEARPVLR EF+G SSSREP TK A SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 183 QEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 242

[Close]

BLAST of CmaCh20G001100 vs. NCBI nr
Match: gi|449444871|ref|XP_004140197.1| (PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 7.8e-110
Identity = 204/240 (85.00%), Postives = 221/240 (92.08%), Query Frame = 1


Query: 2   TSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSH-GSCAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   CDQ EM KK+E+Q TGHGSH G+CAICLNKI+L ETALV
Sbjct: 35  TSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 94

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 95  RGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 154

Query: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGR 181
           WY+P I+++REETYDDPE  +YYPYED DEELE+AYLG+SPSLRIGNRRWG NGYVRAGR
Sbjct: 155 WYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 214

Query: 182 QEARPVLRPEFSGASSSREPTTKDA-SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 238
           QEARPVLR EF+G SSSREP TK A SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 215 QEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 274

[Close]

BLAST of CmaCh20G001100 vs. NCBI nr
Match: gi|659097505|ref|XP_008449663.1| (PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo])

HSP 1 Score: 399.4 bits (1025), Expect = 4.3e-108
Identity = 202/240 (84.17%), Postives = 219/240 (91.25%), Query Frame = 1


Query: 2   TSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSH-GSCAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   C Q EM KK+E+Q TGHGSH G+CAICLNKI+L ETALV
Sbjct: 35  TSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 94

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 95  RGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 154

Query: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGR 181
           WY+PLI ++REETYD+PE  +YY YED DEELE+AYLG+SPSLRIGNRRWG NGYVRAGR
Sbjct: 155 WYKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 214

Query: 182 QEARPVLRPEFSGA-SSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 238
           QEARPVLR EF+G  SSSR+P TK ASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 215 QEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 274

[Close]

BLAST of CmaCh20G001100 vs. NCBI nr
Match: gi|659097507|ref|XP_008449664.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo])

HSP 1 Score: 399.4 bits (1025), Expect = 4.3e-108
Identity = 202/240 (84.17%), Postives = 219/240 (91.25%), Query Frame = 1


Query: 2   TSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSH-GSCAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   C Q EM KK+E+Q TGHGSH G+CAICLNKI+L ETALV
Sbjct: 3   TSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 62

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 63  RGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 122

Query: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGR 181
           WY+PLI ++REETYD+PE  +YY YED DEELE+AYLG+SPSLRIGNRRWG NGYVRAGR
Sbjct: 123 WYKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 182

Query: 182 QEARPVLRPEFSGA-SSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 238
           QEARPVLR EF+G  SSSR+P TK ASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 183 QEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 242

[Close]

BLAST of CmaCh20G001100 vs. NCBI nr
Match: gi|595899827|ref|XP_007213836.1| (hypothetical protein PRUPE_ppa010547mg [Prunus persica])

HSP 1 Score: 319.7 bits (818), Expect = 4.3e-84
Identity = 164/230 (71.30%), Postives = 186/230 (80.87%), Query Frame = 1


Query: 13  LSDAVQDLKVCDQEEMWKKLEMQRTGHGSHGS-CAICLNKISLPETALVRGCEHAYCTTC 72
           LSD +       Q EM    +      G+HG  CAICL++I L ETALV+GCEHAYC TC
Sbjct: 14  LSDLINSSTQQHQGEMQSNTDNVEKRCGNHGGVCAICLDEIMLQETALVKGCEHAYCATC 73

Query: 73  ILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDRE 132
           ILRW +Y+QKPTCPQCKHPFEFL VHRSLDGSIHDYMFEESVCLLLRA W+EPLIV++RE
Sbjct: 74  ILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLRAKWFEPLIVEERE 133

Query: 133 ETYDDPEE-YYPYED-QDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQEARPVLRP-- 192
           + YDDP++ YYPYED +D++L+EAY   S S+RIGNRRWGDNGYVR GRQEARPV R   
Sbjct: 134 DVYDDPDDYYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYVRGGRQEARPVNRSNI 193

Query: 193 EFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 238
           E SGASSSREP  K+A+ DKTGRRAKRALKREAADKAAAAKHQ+HLAR G
Sbjct: 194 EDSGASSSREPRKKEAAMDKTGRRAKRALKREAADKAAAAKHQQHLARLG 243

The following BLAST results are available for this feature:

BLAST of CmaCh20G001100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G001100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK15_CUCSA	5.5e-110	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1	[more]
M5X7I0_PRUPE	3.0e-84	71.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1	[more]
A0A061GU17_THECC	1.1e-83	68.49	RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 S...	[more]
V4UB94_9ROSI	1.5e-83	67.36	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016417mg PE=4 SV=1	[more]
A0A067EV95_CITSI	1.3e-82	66.53	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025685mg PE=4 SV=1	[more]

BLAST of CmaCh20G001100 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19430.1	3.3e-66	55.12	RING/U-box superfamily protein	[more]
AT5G12310.1	2.6e-63	55.00	RING/U-box superfamily protein	[more]

BLAST of CmaCh20G001100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778716917\|ref\|XP_011657615.1\|	7.8e-110	85.00	PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus]	[more]
gi\|449444871\|ref\|XP_004140197.1\|	7.8e-110	85.00	PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus]	[more]
gi\|659097505\|ref\|XP_008449663.1\|	4.3e-108	84.17	PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo]	[more]
gi\|659097507\|ref\|XP_008449664.1\|	4.3e-108	84.17	PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo]	[more]
gi\|595899827\|ref\|XP_007213836.1\|	4.3e-84	71.30	hypothetical protein PRUPE_ppa010547mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G001100.1	CmaCh20G001100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 44..88 score: 5.
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 45..87 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 45..88 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 38..108 score: 2.6
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 63..72 scor
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 44..95 score: 1.79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G001100	Cucsa.087010	Cucumber (Gy14) v1	cgycmaB0166
CmaCh20G001100	Cla008576	Watermelon (97103) v1	cmawmB531
CmaCh20G001100	Csa6G431760	Cucumber (Chinese Long) v2	cmacuB562
CmaCh20G001100	MELO3C014562	Melon (DHL92) v3.5.1	cmameB521
CmaCh20G001100	ClCG02G022870	Watermelon (Charleston Gray)	cmawcgB489
CmaCh20G001100	CSPI06G23870	Wild cucumber (PI 183967)	cmacpiB569
CmaCh20G001100	CmoCh02G013160	Cucurbita moschata (Rifu)	cmacmoB555
CmaCh20G001100	CmoCh20G001190	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G001100	Lsi10G010890	Bottle gourd (USVL1VR-Ls)	cmalsiB500
CmaCh20G001100	Cp4.1LG16g08580	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G001100	Cp4.1LG05g04790	Cucurbita pepo (Zucchini)	cmacpeB586
CmaCh20G001100	MELO3C014562.2	Melon (DHL92) v3.6.1	cmamedB598
CmaCh20G001100	CsaV3_6G039010	Cucumber (Chinese Long) v3	cmacucB0676
CmaCh20G001100	Cla97C02G048950	Watermelon (97103) v2	cmawmbB577
CmaCh20G001100	Bhi10G000198	Wax gourd	cmawgoB0693
CmaCh20G001100	CsGy6G023220	Cucumber (Gy14) v2	cgybcmaB799
CmaCh20G001100	Carg02689	Silver-seed gourd	carcmaB1267
CmaCh20G001100	Carg06878	Silver-seed gourd	carcmaB0732

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh20G001100	CmaCh02G012750	Cucurbita maxima (Rimu)	cmacmaB470

The following block(s) are covering this gene:

None