CmoCh02G013160 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G013160
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING/U-box superfamily protein
LocationCmo_Chr02 : 7819420 .. 7822450 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGATCGCCATTAGAGAATATTCTCGAGCATCTTTTTTTTCTTCTCTTTTGCTTCAGAATAATTCTTCAGCATCTCCTTTCATTTCAAGTTTCGATTTCTGCTGAATAACTGTTGTTCTGGGTTCTGTGTGATCTAATTTATAAAGCGAGAAGAATCGGAGGTGAAACCCTCGTGTTCTCGCCATGGCTTCCTCTGGAATCTCTACTGAAAGCGCTGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGGTTTTAATCTAGTTTTTCACTTTTGAAGTTGTTACACTTTCTTGCGTAAAACTTGGCGCGAGAAATGGTTATTTTTTGTGTTGAGAGTTCGAATTGGAAGTATCGTTGATCTAATCTTGTTTTCTAGATTTTCGCTGGTGAAGGACTAATTGAAGTGTCATCGTCGGTTTAGTCTTGTTTTATTTCATTTTCAAGATTTTCGGGGCGTCGATAAGCGTATTTCTGCTTTTTAATATCAAGGAAGTACGTGGTCTAAATGAATGGATTTGATGAGCGTGTTTTTTTTCTTTTACTCTGAAGATCCGTAGGAAGCGGGAGCTATTGTTAACATTCATTGATTTCCGTTATCCGATTGCCTGCTAATAGATCACCGTTGTTTTCAAATTGTGAATGGTCACCTGCGCATGCTATTTTATTTTCCAATGAAAGTTCTTAATTCTTGCCCTTGGTGTGGCATATTATTGAAGTGTCTCTTTTCAAACATTAGTCATTTGCATAAATATATTTTGAGGATTGCTAAGTTGCTGAACTTCTCTGTTCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGGTTTGTTCTTGTTGATTAATCTTTCATCTATCTATTAATAGTTTCTATAGCACGACTTTCATATGCTATACATTAGGTAATTTGTTGATCCGTTCCTTTTCTGTATTTTGTATGGGAATCTTTTTTGCAGTCAAATGTTGACGTTCTATAGATGGTGCAATTCTTATGCTGCATTTATCATATATATTTCATTTCATTGTGGTTCTATGCTTGAATTGGAGTTGGAGTCTTAAGATCTTGCGAACATATTCCTGGGACTCCGCTAAACTTTATAGGAGAAAATTCATTGTATCCATATTGCTATTGGTACAATGTTTCTAATTGTGCTTCAGGTTGCTGGGATTTAATGGAAGAGGTATGCTATTTTAGATTTATAGCCCAAGTATCTTGGAGTCGGAGGAAATGTATGGTTCAGAGTCTGATGGTTAATCTGTTAATTCTCGTCTTATTTAGTATGTTAATAATTAATTATTGATTATTGAAGTTAGAATGCTTGCTTGGTGAGACTGGGATAGAAACCTGTTGTACTCGGTACTCGGTGACTTATTGTGAGCCTATGAATCTCATAGATGTCGGCTTTGGTAACGTGTTCCTATTCTACGTAGGGTTGGATACTTGTTAAATCGGACAAATATCAAACACTGTATTGAACATTTATGGATTTCAATAGACCTGAATCAGACGCATATTGAACAATTATTAGGCATTTGAACTAAGTGTTGAAACATATGTTGAACAAGGCTGGGATGTTTAGAAAATGTCAATGTCCGTGCTAGTGTCTATGCTTCTTTGTCATTAGCCGATTACTCTTTCATCACCTCCAAATTGTCATCACATACTCGATGCTTTTGGTGTCTGTTGCAAAGTTATGTTTTATTACTTGGTGTGGGGAACATTTCCCCTATGACTATTGCATTTAGTTTTCACTTTCAGCTTAGGAACTTATCAGTAATAATTAAACCAAACAAAAAATGAAGTGGCAAATGGTTAAGTGAATTGTCTATTGTTTTCCAACCACTGAAGCATTACAAATATTTTCCTTGCTTTTTTTGAGGAATAGTGTGATCTTTTACGGTTTATACACATGGGCATTATATTCTTTCATTAATGCATTGTTTTACTTTCATGAAGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACATGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGGTATGCCCCTCCATCATTCTATGGACCTTTTATAGTTTAGAGTCGCAGTATCATTTTAAATTAATGTTCTTCTCTATCCATTTATTGTCTGCGTATTGTAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGATGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTACAAAAAAAGATGCTTCCAAAGATAAAACCGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACGTCTAGCTAGGTTTGGGCGGAAGTGATTCAAGTTCCTGTATATAACAAGCCTTGCGCTTAGACCCTGTGTACAGTTCTAAGATTCAATTTACTTTCACAGTTGAAGTACCTTACCTCCCCTGAGCCTGGTGGCTCCCCAATTAAATCTATGGTGGGGATTATACTTGCATGGTATAAAGGACACCCCAATGAGTTCTTTGTATGAACATTGAATCTCAAAATCAATCATAGAACAATTGTTATGGTCAGATTTTCTGTTCTTTTTTAGATGAAGTAGTCAACCACTTTCATATGTGTGCAAGTTTTACGTGAAGGACACCAAAAGCCTTTGAATTGTAGCTCAAGTAGGTGAAATTTAAGGCATTGGA

mRNA sequence

TGGATCGCCATTAGAGAATATTCTCGAGCATCTTTTTTTTCTTCTCTTTTGCTTCAGAATAATTCTTCAGCATCTCCTTTCATTTCAAGTTTCGATTTCTGCTGAATAACTGTTGTTCTGGGTTCTGTGTGATCTAATTTATAAAGCGAGAAGAATCGGAGGTGAAACCCTCGTGTTCTCGCCATGGCTTCCTCTGGAATCTCTACTGAAAGCGCTGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACATGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGATGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTACAAAAAAAGATGCTTCCAAAGATAAAACCGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACGTCTAGCTAGGTTTGGGCGGAAGTGATTCAAGTTCCTGTATATAACAAGCCTTGCGCTTAGACCCTGTGTACAGTTCTAAGATTCAATTTACTTTCACAGTTGAAGTACCTTACCTCCCCTGAGCCTGGTGGCTCCCCAATTAAATCTATGGTGGGGATTATACTTGCATGGTATAAAGGACACCCCAATGAGTTCTTTGTATGAACATTGAATCTCAAAATCAATCATAGAACAATTGTTATGGTCAGATTTTCTGTTCTTTTTTAGATGAAGTAGTCAACCACTTTCATATGTGTGCAAGTTTTACGTGAAGGACACCAAAAGCCTTTGAATTGTAGCTCAAGTAGGTGAAATTTAAGGCATTGGA

Coding sequence (CDS)

ATGGCTTCCTCTGGAATCTCTACTGAAAGCGCTGAATTGTCTGATGCCGTTCAAATACTGGAAGTTTGCAACCAGATCGAAATGGGAAAGAAGGTAGAGATTCAAGGAACAGGTCATGGGAGTCATGATGGGGTTTGTGCAATATGCTTAAATAAGATAGCTCTCCAAGAAACTGCCTTAGTGAGGGGTTGCGAGCATGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATATAATAAGAATCCGACATGTCCACAATGTAAACATCCATTTGAGTTCCTGATTGTGCATCGTTCTCTTGATGGGAGCGTCCATGACTTTATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCATGGTATATACCTCTGATCGTTGAAGATCGGGAAGAAACCTATGAAGATCCTGATGAGTACTACCCTTACGAGGATGATGACGAAGAGTTTGAGGAAGCTTACCTGGGTGCATCGTCGAGTCTCCGCATCGGCAATCGAAGGTGGGGAGACAATGGATATGTGAGGGGAGGTCGACAAGAAGCACGACCAGTTATTAGGTCAACTGTTCCAGTGCATGCAGGAGCTAGTTCATCACGTGAGCCTACAAAAAAAGATGCTTCCAAAGATAAAACCGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAACATCAGGAACGTCTAGCTAGGTTTGGGCGGAAGTGA
Homology
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BLAST of CmoCh02G013160 vs. TrEMBL
Match: A0A0A0KK15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 7.5e-107
Identity = 202/244 (82.79%), Postives = 216/244 (88.52%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           SSGIS +SAE+SDAVQ    C+Q+EMGKKVEIQGTGHGSHDG CAICLNKIALQETALVR
Sbjct: 36  SSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 95

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYCATCILRWASY K PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRASW
Sbjct: 96  GCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 155

Query: 123 YIPLIVEDREETYEDP--DEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 182
           Y P I+E+REETY+DP  D+YYPYEDDDEE E+AYLG S SLRIGNRRWG NGYVR GRQ
Sbjct: 156 YKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 215

Query: 183 EARPVIRSTVPVHAGASSSREP-TKKDASKDKTGRRAKRALKREAADKAAAAKHQERLAR 242
           EARPV+R       G SSSREP TK+ +SKDKTGRRAKRALKREAADKAAAAKHQE LAR
Sbjct: 216 EARPVLRQE---FTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 275

Query: 243 FGRK 244
           FGRK
Sbjct: 276 FGRK 276

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BLAST of CmoCh02G013160 vs. TrEMBL
Match: M5X7I0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 9.5e-86
Identity = 165/233 (70.82%), Postives = 193/233 (82.83%), Query Frame = 1 

Query: 13  LSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATC 72
           LSD +      +Q EM    +      G+H GVCAICL++I LQETALV+GCEHAYCATC
Sbjct: 14  LSDLINSSTQQHQGEMQSNTDNVEKRCGNHGGVCAICLDEIMLQETALVKGCEHAYCATC 73

Query: 73  ILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDRE 132
           ILRW +Y++ PTCPQCKHPFEFL VHRSLDGS+HD+MFEESVCLLLRA W+ PLIVE+RE
Sbjct: 74  ILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLRAKWFEPLIVEERE 133

Query: 133 ETYEDPDE-YYPYED-DDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTV 192
           + Y+DPD+ YYPYED +D++ +EAY  +SSS+RIGNRRWGDNGYVRGGRQEARPV RS +
Sbjct: 134 DVYDDPDDYYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYVRGGRQEARPVNRSNI 193

Query: 193 PVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQERLARFGRK 244
              +GASSSREP KK+A+ DKTGRRAKRALKREAADKAAAAKHQ+ LAR GRK
Sbjct: 194 E-DSGASSSREPRKKEAAMDKTGRRAKRALKREAADKAAAAKHQQHLARLGRK 245

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BLAST of CmoCh02G013160 vs. TrEMBL
Match: B9GG85_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28270g PE=4 SV=2)

HSP 1 Score: 318.5 bits (815), Expect = 6.8e-84
Identity = 156/223 (69.96%), Postives = 184/223 (82.51%), Query Frame = 1 

Query: 25  QIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRWASYNKNPT 84
           Q EM  KVE      G+H G+CAICL+KI LQETALV+GCEHAYC TCILRW++Y KNPT
Sbjct: 19  QGEMESKVESSERACGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWSTYTKNPT 78

Query: 85  CPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDREETYEDPDEYYPY 144
           CPQCKHPFEFL +HRSLDGS+ D+MFEESVCLLLRASW++ L VED E+ YEDP++YYPY
Sbjct: 79  CPQCKHPFEFLNIHRSLDGSIQDYMFEESVCLLLRASWFMTLTVEDHEDVYEDPEDYYPY 138

Query: 145 ----EDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTVPVHAGASSSR 204
               EDDD++ +E YL +SS+LRIGNRRWGDNGYVR G QEARPV ++     +GA +SR
Sbjct: 139 EFEDEDDDDDLDEVYLSSSSNLRIGNRRWGDNGYVRAGHQEARPVYQADFK-DSGACTSR 198

Query: 205 EPTKKDASKDKTGRRAKRALKREAADKAAAAKHQERLARFGRK 244
           EP KK+A+KD+TGRRAKR LKREAADKAAA+KHQ+ LAR GRK
Sbjct: 199 EPKKKEAAKDRTGRRAKRTLKREAADKAAASKHQQHLARLGRK 240

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BLAST of CmoCh02G013160 vs. TrEMBL
Match: A0A061GU17_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 9.9e-83
Identity = 161/241 (66.80%), Postives = 193/241 (80.08%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           +S I  ++ ++ +A+  L + +Q EM  K  +   G  +H G+CAICL+KI LQETALV+
Sbjct: 2   TSVIKIDAEQIVNALPNLSLQDQKEMKNKGAVGEEGCENHSGICAICLDKIVLQETALVK 61

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYC TCILRWA+Y+K PTCPQCKHPFEFL VHRSLDG ++D+MFEESVCLLLRA+W
Sbjct: 62  GCEHAYCVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAW 121

Query: 123 YIPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEA 182
           + PLIVEDREE Y+D ++YYPYE+DD++ +EAY  +S SLRIGNRRWGDNGYVR GRQEA
Sbjct: 122 FEPLIVEDREELYDDLEDYYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQEA 181

Query: 183 RPVIRSTVPVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQERLARFGR 242
           RPV RS     +GA SSREP KK+ +K   GRRAKRALKREAADKAAAAKHQE L R GR
Sbjct: 182 RPVQRSNFQ-DSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHLMRLGR 240

Query: 243 K 244
           K
Sbjct: 242 K 240

[Close]
BLAST of CmoCh02G013160 vs. TrEMBL
Match: A0A061GZE8_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-81
Identity = 161/241 (66.80%), Postives = 193/241 (80.08%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           +S I  ++ ++ +A+  L + +Q EM  K  +   G  +H G+CAICL+KI LQETALV+
Sbjct: 2   TSVIKIDAEQIVNALPNLSLQDQ-EMKNKGAVGEEGCENHSGICAICLDKIVLQETALVK 61

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYC TCILRWA+Y+K PTCPQCKHPFEFL VHRSLDG ++D+MFEESVCLLLRA+W
Sbjct: 62  GCEHAYCVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAW 121

Query: 123 YIPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEA 182
           + PLIVEDREE Y+D ++YYPYE+DD++ +EAY  +S SLRIGNRRWGDNGYVR GRQEA
Sbjct: 122 FEPLIVEDREELYDDLEDYYPYEEDDDQ-DEAYYASSPSLRIGNRRWGDNGYVRSGRQEA 181

Query: 183 RPVIRSTVPVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQERLARFGR 242
           RPV RS     +GA SSREP KK+ +K   GRRAKRALKREAADKAAAAKHQE L R GR
Sbjct: 182 RPVQRSNFQ-DSGAGSSREPKKKEVAKSTMGRRAKRALKREAADKAAAAKHQEHLMRLGR 239

Query: 243 K 244
           K
Sbjct: 242 K 239

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BLAST of CmoCh02G013160 vs. TAIR10
Match: AT5G19430.1 (AT5G19430.1 RING/U-box superfamily protein)

HSP 1 Score: 252.7 bits (644), Expect = 2.3e-67
Identity = 138/245 (56.33%), Postives = 175/245 (71.43%), Query Frame = 1 

Query: 12  ELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCAT 71
           ++ D +Q L + NQ +   + EI     G+H G CAICL++I LQETA+V+GCEH YC T
Sbjct: 12  QVIDGIQDLALQNQDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHTYCVT 71

Query: 72  CILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDR 131
           CILRWAS  ++PTCPQCKHPF+FL VHR+LDGS+ DF+FEESVCLLLRASW++PL V ++
Sbjct: 72  CILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDVVEQ 131

Query: 132 EE----TYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIR 191
                  ++D D  Y YED+D++ +E YL   SSLRIGNRRWG NG+VR GRQEARPV R
Sbjct: 132 ASYSHGYHDDFDIPYDYEDEDDDLDEFYL-HGSSLRIGNRRWGGNGFVRSGRQEARPVQR 191

Query: 192 -----STVPVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKA----AAAKHQERLA 244
                S+    +G+SSS    K+  + + TGRRAKRA+KREAA+KA    AAAKH+  L 
Sbjct: 192 YSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHEAHLV 251

[Close]
BLAST of CmoCh02G013160 vs. TAIR10
Match: AT5G12310.1 (AT5G12310.1 RING/U-box superfamily protein)

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-62
Identity = 136/243 (55.97%), Postives = 164/243 (67.49%), Query Frame = 1 

Query: 17  VQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATCILRW 76
           V +L + +Q E            G+H G CAICL+ I LQETA+V+GCEHAYC TCILRW
Sbjct: 14  VDVLPLQDQDEKKTPQVFNELSFGNHGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRW 73

Query: 77  ASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDREET-- 136
           ASY + PTCPQCK PF+FL VHR+LDGSV DFMFEESVCLLLRASW+ PL   +R     
Sbjct: 74  ASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMFEESVCLLLRASWFQPLEAVERVSDND 133

Query: 137 -----YEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRST 196
                ++ P EY   ++DD++ +E Y+   SSLR+GNRRWGDNG+VR GRQEARPV    
Sbjct: 134 NFNYDFDIPPEYEEEDEDDDDLDEFYM-QGSSLRLGNRRWGDNGFVRAGRQEARPVQHKN 193

Query: 197 VPVHAG-----ASSSREPTKKDASKDKTGRRAKRALKREAADKA----AAAKHQERLARF 244
               A      +SSS EP +K +S   TGRRAKRA+KREAA+KA    AAAKH+  L R 
Sbjct: 194 RGGQASGSEPASSSSCEPKEKTSSAI-TGRRAKRAMKREAANKAAEAVAAAKHEALLVRL 253

[Close]
BLAST of CmoCh02G013160 vs. NCBI nr
Match: gi|449444871|ref|XP_004140197.1| (PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus])

HSP 1 Score: 394.8 bits (1013), Expect = 1.1e-106
Identity = 202/244 (82.79%), Postives = 216/244 (88.52%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           SSGIS +SAE+SDAVQ    C+Q+EMGKKVEIQGTGHGSHDG CAICLNKIALQETALVR
Sbjct: 36  SSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 95

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYCATCILRWASY K PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRASW
Sbjct: 96  GCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 155

Query: 123 YIPLIVEDREETYEDP--DEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 182
           Y P I+E+REETY+DP  D+YYPYEDDDEE E+AYLG S SLRIGNRRWG NGYVR GRQ
Sbjct: 156 YKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 215

Query: 183 EARPVIRSTVPVHAGASSSREP-TKKDASKDKTGRRAKRALKREAADKAAAAKHQERLAR 242
           EARPV+R       G SSSREP TK+ +SKDKTGRRAKRALKREAADKAAAAKHQE LAR
Sbjct: 216 EARPVLRQE---FTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 275

Query: 243 FGRK 244
           FGRK
Sbjct: 276 FGRK 276

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BLAST of CmoCh02G013160 vs. NCBI nr
Match: gi|778716917|ref|XP_011657615.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus])

HSP 1 Score: 394.8 bits (1013), Expect = 1.1e-106
Identity = 202/244 (82.79%), Postives = 216/244 (88.52%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           SSGIS +SAE+SDAVQ    C+Q+EMGKKVEIQGTGHGSHDG CAICLNKIALQETALVR
Sbjct: 4   SSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 63

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYCATCILRWASY K PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRASW
Sbjct: 64  GCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 123

Query: 123 YIPLIVEDREETYEDP--DEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 182
           Y P I+E+REETY+DP  D+YYPYEDDDEE E+AYLG S SLRIGNRRWG NGYVR GRQ
Sbjct: 124 YKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 183

Query: 183 EARPVIRSTVPVHAGASSSREP-TKKDASKDKTGRRAKRALKREAADKAAAAKHQERLAR 242
           EARPV+R       G SSSREP TK+ +SKDKTGRRAKRALKREAADKAAAAKHQE LAR
Sbjct: 184 EARPVLRQE---FTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 243

Query: 243 FGRK 244
           FGRK
Sbjct: 244 FGRK 244

[Close]
BLAST of CmoCh02G013160 vs. NCBI nr
Match: gi|659097505|ref|XP_008449663.1| (PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo])

HSP 1 Score: 392.1 bits (1006), Expect = 7.0e-106
Identity = 199/243 (81.89%), Postives = 213/243 (87.65%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           SSGIS +SAE+SDAVQ    C+Q+EMGKKVEIQGTGHGSHDG CAICLNKIALQETALVR
Sbjct: 36  SSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 95

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYCATCILRWASY + PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRASW
Sbjct: 96  GCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 155

Query: 123 YIPLIVEDREETYEDP--DEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 182
           Y PLI E+REETY++P  D+YY YEDDDEE E+AYLG S SLRIGNRRWG NGYVR GRQ
Sbjct: 156 YKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 215

Query: 183 EARPVIRSTVPVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQERLARF 242
           EARPV+R       G SSSR+P  K ASKDKTGRRAKRALKREAADKAAAAKHQE LARF
Sbjct: 216 EARPVLRQEFT--GGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 275

Query: 243 GRK 244
           GRK
Sbjct: 276 GRK 276

[Close]
BLAST of CmoCh02G013160 vs. NCBI nr
Match: gi|659097507|ref|XP_008449664.1| (PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo])

HSP 1 Score: 392.1 bits (1006), Expect = 7.0e-106
Identity = 199/243 (81.89%), Postives = 213/243 (87.65%), Query Frame = 1 

Query: 3   SSGISTESAELSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVR 62
           SSGIS +SAE+SDAVQ    C+Q+EMGKKVEIQGTGHGSHDG CAICLNKIALQETALVR
Sbjct: 4   SSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVR 63

Query: 63  GCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASW 122
           GCEHAYCATCILRWASY + PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRASW
Sbjct: 64  GCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASW 123

Query: 123 YIPLIVEDREETYEDP--DEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 182
           Y PLI E+REETY++P  D+YY YEDDDEE E+AYLG S SLRIGNRRWG NGYVR GRQ
Sbjct: 124 YKPLIFEEREETYDEPEDDQYYHYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQ 183

Query: 183 EARPVIRSTVPVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQERLARF 242
           EARPV+R       G SSSR+P  K ASKDKTGRRAKRALKREAADKAAAAKHQE LARF
Sbjct: 184 EARPVLRQEFT--GGPSSSRDPVTKQASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 243

Query: 243 GRK 244
           GRK
Sbjct: 244 GRK 244

[Close]
BLAST of CmoCh02G013160 vs. NCBI nr
Match: gi|595899827|ref|XP_007213836.1| (hypothetical protein PRUPE_ppa010547mg [Prunus persica])

HSP 1 Score: 324.7 bits (831), Expect = 1.4e-85
Identity = 165/233 (70.82%), Postives = 193/233 (82.83%), Query Frame = 1 

Query: 13  LSDAVQILEVCNQIEMGKKVEIQGTGHGSHDGVCAICLNKIALQETALVRGCEHAYCATC 72
           LSD +      +Q EM    +      G+H GVCAICL++I LQETALV+GCEHAYCATC
Sbjct: 14  LSDLINSSTQQHQGEMQSNTDNVEKRCGNHGGVCAICLDEIMLQETALVKGCEHAYCATC 73

Query: 73  ILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRASWYIPLIVEDRE 132
           ILRW +Y++ PTCPQCKHPFEFL VHRSLDGS+HD+MFEESVCLLLRA W+ PLIVE+RE
Sbjct: 74  ILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLRAKWFEPLIVEERE 133

Query: 133 ETYEDPDE-YYPYED-DDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQEARPVIRSTV 192
           + Y+DPD+ YYPYED +D++ +EAY  +SSS+RIGNRRWGDNGYVRGGRQEARPV RS +
Sbjct: 134 DVYDDPDDYYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYVRGGRQEARPVNRSNI 193

Query: 193 PVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQERLARFGRK 244
              +GASSSREP KK+A+ DKTGRRAKRALKREAADKAAAAKHQ+ LAR GRK
Sbjct: 194 E-DSGASSSREPRKKEAAMDKTGRRAKRALKREAADKAAAAKHQQHLARLGRK 245

The following BLAST results are available for this feature:
BLAST of CmoCh02G013160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G013160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK15_CUCSA7.5e-10782.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G431760 PE=4 SV=1[more]
M5X7I0_PRUPE9.5e-8670.82Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1[more]
B9GG85_POPTR6.8e-8469.96Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28270g PE=4 SV=2[more]
A0A061GU17_THECC9.9e-8366.80RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 S... [more]
A0A061GZE8_THECC1.1e-8166.80RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040934 PE=4 S... [more]
BLAST of CmoCh02G013160 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19430.12.3e-6756.33 RING/U-box superfamily protein[more]
AT5G12310.11.0e-6255.97 RING/U-box superfamily protein[more]
BLAST of CmoCh02G013160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444871|ref|XP_004140197.1|1.1e-10682.79PREDICTED: uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus][more]
gi|778716917|ref|XP_011657615.1|1.1e-10682.79PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus][more]
gi|659097505|ref|XP_008449663.1|7.0e-10681.89PREDICTED: uncharacterized protein LOC103491476 isoform X1 [Cucumis melo][more]
gi|659097507|ref|XP_008449664.1|7.0e-10681.89PREDICTED: E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo][more]
gi|595899827|ref|XP_007213836.1|1.4e-8570.82hypothetical protein PRUPE_ppa010547mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G013160.1CmoCh02G013160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 46..89
score: 7.
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 46..88
score: 7.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 46..89
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 43..96
score: 4.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 64..73
scor
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 40..96
score: 1.66

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G013160Cucsa.087010Cucumber (Gy14) v1cgycmoB0162
CmoCh02G013160CmaCh20G001100Cucurbita maxima (Rimu)cmacmoB555
CmoCh02G013160CmaCh02G012750Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G013160Cla008576Watermelon (97103) v1cmowmB585
CmoCh02G013160Csa6G431760Cucumber (Chinese Long) v2cmocuB620
CmoCh02G013160MELO3C014562Melon (DHL92) v3.5.1cmomeB561
CmoCh02G013160ClCG02G022870Watermelon (Charleston Gray)cmowcgB538
CmoCh02G013160CSPI06G23870Wild cucumber (PI 183967)cmocpiB627
CmoCh02G013160Lsi10G010890Bottle gourd (USVL1VR-Ls)cmolsiB525
CmoCh02G013160Cp4.1LG16g08580Cucurbita pepo (Zucchini)cmocpeB576
CmoCh02G013160Cp4.1LG05g04790Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G013160MELO3C014562.2Melon (DHL92) v3.6.1cmomedB642
CmoCh02G013160CsaV3_6G039010Cucumber (Chinese Long) v3cmocucB0740
CmoCh02G013160Cla97C02G048950Watermelon (97103) v2cmowmbB602
CmoCh02G013160Bhi10G000198Wax gourdcmowgoB0747
CmoCh02G013160CsGy6G023220Cucumber (Gy14) v2cgybcmoB798
CmoCh02G013160Carg02689Silver-seed gourdcarcmoB1237
CmoCh02G013160Carg06878Silver-seed gourdcarcmoB0710
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G013160CmoCh20G001190Cucurbita moschata (Rifu)cmocmoB405
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G013160Cucurbita maxima (Rimu)cmacmoB094
CmoCh02G013160Cucurbita maxima (Rimu)cmacmoB152
CmoCh02G013160Cucurbita pepo (Zucchini)cmocpeB581
CmoCh02G013160Cucurbita pepo (Zucchini)cmocpeB593
CmoCh02G013160Cucumber (Gy14) v2cgybcmoB110
CmoCh02G013160Cucumber (Chinese Long) v3cmocucB0676
CmoCh02G013160Cucurbita moschata (Rifu)cmocmoB072
CmoCh02G013160Cucurbita moschata (Rifu)cmocmoB118