Carg06878-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCGGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTTTTATTCTTTCTCTTCATTTCGAAGTTGATATACTTTCACGAACTTTCTTTATCGTAGAAAATCAGCGGCGTAAAACTTGGCGTGGGAATGGTTGTCTCCGATTTGTGTTGAGAGTTTTAATTAGAAGATTTGTGTTGATTTAGTCTTGTTGTCATTCATTTTCAAGATTTGCTTTTCTGGGGGGCTAATTGAAGTCTGAGATCGTCGGTTCAGTCTTGTTTTCTTTCATTGTCTAGATTACGCACATCTGGAGGCTTGTTTTCTGCGTTTATCATCTAGGAAGAATATGGTTAAAACGAATTGAATTCATGTTTGTACCATAAGAAGCAGAAGCAATTGTTTATGTTTATCCGACTGCCAGTTTGAATTGCTACGTCTCCCCCTTGCGAATTTGGTCGATCTCCTGCGCATGCTTATTTATTTTATGAAAACCTTCCCCTGTTGCAGTCAGAGTTGCATATCTATGATTTTGTTGGTCTTTTTTCAATTATTTGCGCATACATACTTCGAGGATTGCTAACTTGCTGTACTTGCACGTTCAGGTGGAAATGTGGAAGAAGTTAGAAATCCAAGGGACGGGGCACGGGAGCCATGATGGCGCCTGTGCAATTTGTTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGGTTAGTTCTAATTGATTAATCGTTTGTCTACTAATTAATGTTTTTTATGGAATGACTTTCACCTGCTTCAATACATTAGGTAATTGTTGATCTGTTTCTTTCCAGTATTTGTATGGGAATCCTTTTTGCAGTCAAATGTTGAAGTTCTATAGATGGTGTTATTCTAATGCTTGCTTTTATCATTTATATTTCATTTTGTTGCGACTAATATGCTTGTAATGGAGATGGAGTGTAAAGTTCTTGCGAACATATATTCACTGTATCCATATTGTCTTTTGTGCAATGTTTCTAATATTACTTGAGGTTGTTCGGATTTAATTGAAGAGGTATGCTGTTCTAGGCTTATAACCAAAGCATCTTGGAGTTAGGAAATTGTATGGTACTGAGCCTAATGGTTAATCTATAGTTTGATGATCTTTGAAAGTTATGTCAGAAACTAGCAGAAGTCATTGTATAGAAGTTAAAATGCTTGCTTGGTGGGACTTGGATAGAAATTTGTTGTTCTTTGAAGCATTAGAAATTCTGTCCTTGTGTTGTTTGTGGAATGAAGGTGACCTTTTATAGCTGTGCATATGGGCGTTGTCTTATTTTGTTTCATCTTTCTTTAACTTTCATGAAGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGATCTCTTGACGGGAGGTATGTCCATTCATCGTTCTATGGACCTTTGATAGTTTAGAGTTTGAACTCTAGGTGGCCTGGTATCTTTTTTAAGTTACTGTTCTTGCTAAGTTACTGTTCTTACTATATATTGCTTGTGCATTGTTTAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAACTTAATGTCGAGCTCCTGTATAGAAATAAGCCCTGCGCTTGACCTTGTGTACAGTTTCTAAGGTTCATTTTAGTTTGCTGGGCGATGTGCCTTACCAGATGCTGGTAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATTATAAACATTGGCTCTCAAAAGTAATCATAAAAGTATTAAGACTTTATCAATCTCTTATTTTTTTTTAGGGGTTATTGTTGAGGATTATTGGGAGTGAGTCCCACCCTTGTTAATTTAAGGGAGGA ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCGGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGTATTTGTATGGGAATCCTTTTTGCAGTCAAATGTTGAAGTTCTATAGATGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGATCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAACTTAATGTCGAGCTCCTGTATAGAAATAAGCCCTGCGCTTGACCTTGTGTACAGTTTCTAAGGTTCATTTTAGTTTGCTGGGCGATGTGCCTTACCAGATGCTGGTAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATTATAAACATTGGCTCTCAAAAGTAATCATAAAAGTATTAAGACTTTATCAATCTCTTATTTTTTTTTAGGGGTTATTGTTGAGGATTATTGGGAGTGAGTCCCACCCTTGTTAATTTAAGGGAGGA ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCGGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGTATTTGTATGGGAATCCTTTTTGCAGTCAAATGTTGAAGTTCTATAGATGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGATCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAA MTSSGISLKSAELSDAVQDLKVCDQYLYGNPFCSQMLKFYRCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN
BLAST of Carg06878-RA vs. NCBI nr
Match: XP_023511780.1 (uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 377.1 bits (967), Expect = 4.0e-101 Identity = 199/240 (82.92%), Postives = 201/240 (83.75%), Query Frame = 0
BLAST of Carg06878-RA vs. NCBI nr
Match: XP_022943783.1 (uncharacterized protein LOC111448431 [Cucurbita moschata]) HSP 1 Score: 374.0 bits (959), Expect = 3.4e-100 Identity = 198/240 (82.50%), Postives = 200/240 (83.33%), Query Frame = 0
BLAST of Carg06878-RA vs. NCBI nr
Match: XP_022987030.1 (uncharacterized protein LOC111484597 [Cucurbita maxima]) HSP 1 Score: 371.7 bits (953), Expect = 1.7e-99 Identity = 197/239 (82.43%), Postives = 200/239 (83.68%), Query Frame = 0
BLAST of Carg06878-RA vs. NCBI nr
Match: XP_022995136.1 (uncharacterized protein LOC111490767 [Cucurbita maxima]) HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84 Identity = 173/241 (71.78%), Postives = 184/241 (76.35%), Query Frame = 0
BLAST of Carg06878-RA vs. NCBI nr
Match: XP_022958365.1 (uncharacterized protein LOC111459609 [Cucurbita moschata]) HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83 Identity = 172/241 (71.37%), Postives = 183/241 (75.93%), Query Frame = 0
BLAST of Carg06878-RA vs. TAIR10
Match: AT5G12310.1 (RING/U-box superfamily protein) HSP 1 Score: 172.6 bits (436), Expect = 2.7e-43 Identity = 102/188 (54.26%), Postives = 118/188 (62.77%), Query Frame = 0
BLAST of Carg06878-RA vs. TAIR10
Match: AT5G19430.1 (RING/U-box superfamily protein) HSP 1 Score: 162.9 bits (411), Expect = 2.1e-40 Identity = 98/188 (52.13%), Postives = 117/188 (62.23%), Query Frame = 0
BLAST of Carg06878-RA vs. TrEMBL
Match: tr|A0A061GU17|A0A061GU17_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_040934 PE=4 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 2.5e-67 Identity = 132/172 (76.74%), Postives = 148/172 (86.05%), Query Frame = 0
BLAST of Carg06878-RA vs. TrEMBL
Match: tr|A0A061GZE8|A0A061GZE8_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_040934 PE=4 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 2.5e-67 Identity = 132/172 (76.74%), Postives = 148/172 (86.05%), Query Frame = 0
BLAST of Carg06878-RA vs. TrEMBL
Match: tr|A0A2P2P163|A0A2P2P163_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 1.8e-65 Identity = 130/175 (74.29%), Postives = 150/175 (85.71%), Query Frame = 0
BLAST of Carg06878-RA vs. TrEMBL
Match: tr|V4UB94|V4UB94_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016417mg PE=4 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 8.8e-65 Identity = 129/174 (74.14%), Postives = 144/174 (82.76%), Query Frame = 0
BLAST of Carg06878-RA vs. TrEMBL
Match: tr|A0A2H5PF33|A0A2H5PF33_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_130490 PE=4 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 8.8e-65 Identity = 133/198 (67.17%), Postives = 153/198 (77.27%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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