CSPI05G21830 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G21830
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPhotosystem II core complex proteins psbY
LocationChr5 : 22448512 .. 22449656 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGTTATACTAGTTAGTATTTTTTATTTTAATTATCCCAAAACACATTAGTGAGAAATGAAGATTAAGTTAAATGTTACGTCAAAAGTGTTTGTTATATGGTGAATGAAAATTAGAATTAGAAGAAGATAATATGGATGAGAAAGGAATAGTGATGGCAACAAAATTTTGAGGCTCAAAATTTCCCAATCCCACCGTTTTAGATAAGAATACAATCCATTCTCTCAATTCCATTGGCTCTCATTTCCCCAAAATCCTCTCTCAAATTTCCCAAAAACGCTCTTCACATCCCTAATTCCTATTCCCTACACACCAATTTCTTCACTCTCCTTCAATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCCTCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGAAATGGTGATTAGATGATCCTTAAATTACTTGTAATTTTAAATGCAAATCTCTCTCTCTTATGCTTTATAAATGAAGCGTTGGAGTCTAAGCCCAAACTTGATTTCTTTTTGGGGTCTTTTTTAGTGTTTATAATCAATATTCACCAACCTCAACTTCCAATATACTTTCATTATTCTTATTAATACTTTTAGATACCACTTTCGTCCAGTTCTATGCTTATTTTCGTTCATTTTTATTACTTTCATCTGTTAATTTATGCATTTACTAGTTG

mRNA sequence

ATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCCTCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGA

Coding sequence (CDS)

ATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCCTCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGA
Homology
[Close]
BLAST of CSPI05G21830 vs. Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 196.4 bits (498), Expect = 2.6e-49
Identity = 125/199 (62.81%), Postives = 140/199 (70.35%), Query Frame = 1 

Query: 1   MAATMAT-MAILNAKCFT-PINKTPLLPSKPATKPISLP--------LPILTKPSLAGTA 60
           MAATMAT MA+LN KC T   NKT     KP +KPISL         LP+   P +   A
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAIFSTLSSGDAALAAQQIADLAE----GDNRGLALLLPLIPAVAWVLFNILQPALNQ 120
           IAGA+F+TL S D A A QQ+AD+A      DNRGLALLLP+IPA+ WVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INRMRTE-KAVIVGLGLGGLLASG-LVGTPEAMAAE----AGSDGRGQLLLIVVAPAIAW 180
           IN+MR E KA IVGLGL GL  SG L+ TPEA AA      GSD RG LLL+VV PAI W
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

[Close]
BLAST of CSPI05G21830 vs. Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-43
Identity = 111/191 (58.12%), Postives = 134/191 (70.16%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFS 60
           MAA MAT      KC +     P L ++  +KP ISLP P     SLA   TA+AGA+FS
Sbjct: 1   MAAAMATAT----KCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TLSSGDAALAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           +LS  + ALA QQIA LA      DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQ 179
           K ++VGLG+ GGL ASGL+  P      A AA A SD RGQLLLIVV PA+ WVL+NILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

[Close]
BLAST of CSPI05G21830 vs. TrEMBL
Match: A0A0A0KTG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G592810 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 4.4e-88
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60
           MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS
Sbjct: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60

Query: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120
           SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL
Sbjct: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 179

[Close]
BLAST of CSPI05G21830 vs. TrEMBL
Match: B9HTF3_POPTR (Photosystem II core complex proteins psbY OS=Populus trichocarpa GN=POPTR_0010s06190g PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.3e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P+KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSNKNISPTKPSTKPVSLLSMQNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRGLALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP       AM A+A SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPHASASEIAMIADATSDNRGTLLLIVVAPAILWVLY 180

[Close]
BLAST of CSPI05G21830 vs. TrEMBL
Match: A9PIV1_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.3e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSIKNISPPKPSTKPVSLLSMLNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRG+ALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP+      AM AEA SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPDASASEIAMIAEAASDNRGTLLLIVVAPAILWVLY 180

[Close]
BLAST of CSPI05G21830 vs. TrEMBL
Match: A9PJ80_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.3e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P+KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSNKNISPTKPSTKPVSLLSMQNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRGLALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP       AM A+A SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPHASASEIAMIADATSDNRGTLLLIVVAPAILWVLY 180

[Close]
BLAST of CSPI05G21830 vs. TrEMBL
Match: A9PJJ8_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.0e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSIKNISPPKPSTKPVSLLSMLNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRG+ALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP+      AM AEA SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPDASASEIAMIAEATSDNRGTLLLIVVAPAILWVLY 180

[Close]
BLAST of CSPI05G21830 vs. TAIR10
Match: AT1G67740.1 (AT1G67740.1 photosystem II BY)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-44
Identity = 111/191 (58.12%), Postives = 134/191 (70.16%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFS 60
           MAA MAT      KC +     P L ++  +KP ISLP P     SLA   TA+AGA+FS
Sbjct: 1   MAAAMATAT----KCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TLSSGDAALAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           +LS  + ALA QQIA LA      DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQ 179
           K ++VGLG+ GGL ASGL+  P      A AA A SD RGQLLLIVV PA+ WVL+NILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

[Close]
BLAST of CSPI05G21830 vs. NCBI nr
Match: gi|449435015|ref|XP_004135291.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 6.4e-88
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60
           MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS
Sbjct: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60

Query: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120
           SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL
Sbjct: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 179

[Close]
BLAST of CSPI05G21830 vs. NCBI nr
Match: gi|659090621|ref|XP_008446112.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 7.5e-81
Identity = 171/180 (95.00%), Postives = 173/180 (96.11%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTL 60
           MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTL
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTL 60

Query: 61  SSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120
           SSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG
Sbjct: 61  SSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120

Query: 121 LGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           LGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Sbjct: 121 LGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]
BLAST of CSPI05G21830 vs. NCBI nr
Match: gi|224110818|ref|XP_002315645.1| (Photosystem II core complex proteins psbY [Populus trichocarpa])

HSP 1 Score: 228.8 bits (582), Expect = 7.6e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P+KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSNKNISPTKPSTKPVSLLSMQNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRGLALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP       AM A+A SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPHASASEIAMIADATSDNRGTLLLIVVAPAILWVLY 180

[Close]
BLAST of CSPI05G21830 vs. NCBI nr
Match: gi|118488993|gb|ABK96304.1| (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 228.8 bits (582), Expect = 7.6e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSIKNISPPKPSTKPVSLLSMLNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRG+ALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP+      AM AEA SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPDASASEIAMIAEAASDNRGTLLLIVVAPAILWVLY 180

[Close]
BLAST of CSPI05G21830 vs. NCBI nr
Match: gi|743898126|ref|XP_011042352.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica])

HSP 1 Score: 228.4 bits (581), Expect = 9.9e-57
Identity = 133/196 (67.86%), Postives = 155/196 (79.08%), Query Frame = 1 

Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P+KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSNKNINPTKPSTKPVSLLSMQNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRG+ALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP+      AM A+A SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPDASASEIAMIADATSDNRGTLLLIVVAPAILWVLY 180

The following BLAST results are available for this feature:
BLAST of CSPI05G21830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBY_SPIOL2.6e-4962.81Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN... [more]
PSBY_ARATH2.1e-4358.12Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana... [more]
BLAST of CSPI05G21830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTG2_CUCSA4.4e-88100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G592810 PE=3 SV=1[more]
B9HTF3_POPTR5.3e-5768.37Photosystem II core complex proteins psbY OS=Populus trichocarpa GN=POPTR_0010s0... [more]
A9PIV1_9ROSI5.3e-5768.37Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2... [more]
A9PJ80_9ROSI5.3e-5768.37Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2... [more]
A9PJJ8_9ROSI9.0e-5768.37Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2... [more]
BLAST of CSPI05G21830 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67740.11.2e-4458.12 photosystem II BY[more]
BLAST of CSPI05G21830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435015|ref|XP_004135291.1|6.4e-88100.00PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi... [more]
gi|659090621|ref|XP_008446112.1|7.5e-8195.00PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi... [more]
gi|224110818|ref|XP_002315645.1|7.6e-5768.37Photosystem II core complex proteins psbY [Populus trichocarpa][more]
gi|118488993|gb|ABK96304.1|7.6e-5768.37unknown [Populus trichocarpa x Populus deltoides][more]
gi|743898126|ref|XP_011042352.1|9.9e-5767.86PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009388PSII_PsbY
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Molecular Function
TermDefinition
GO:0030145manganese ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0016043 cellular component organization
biological_process GO:0006364 rRNA processing
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0009657 plastid organization
biological_process GO:0010207 photosystem II assembly
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:0044238 primary metabolic process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
cellular_component GO:0009523 photosystem II
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0030145 manganese ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G21830.1CSPI05G21830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009388Photosystem II PsbYHAMAPMF_00717PSII_PsbYcoord: 78..112
score: 10
IPR009388Photosystem II PsbYPFAMPF06298PsbYcoord: 78..110
score: 1.8E-14coord: 144..176
score: 2.4
NoneNo IPR availablePANTHERPTHR34790FAMILY NOT NAMEDcoord: 46..179
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G21830Cla010005Watermelon (97103) v1cpiwmB410
CSPI05G21830Cla022723Watermelon (97103) v1cpiwmB382
CSPI05G21830Csa5G592810Cucumber (Chinese Long) v2cpicuB239
CSPI05G21830Csa2G350230Cucumber (Chinese Long) v2cpicuB220
CSPI05G21830MELO3C011911Melon (DHL92) v3.5.1cpimeB369
CSPI05G21830MELO3C010708Melon (DHL92) v3.5.1cpimeB389
CSPI05G21830ClCG08G017510Watermelon (Charleston Gray)cpiwcgB429
CSPI05G21830Lsi04G006360Bottle gourd (USVL1VR-Ls)cpilsiB372
CSPI05G21830Lsi08G016260Bottle gourd (USVL1VR-Ls)cpilsiB392
CSPI05G21830MELO3C010708.2Melon (DHL92) v3.6.1cpimedB383
CSPI05G21830MELO3C011911.2Melon (DHL92) v3.6.1cpimedB363
CSPI05G21830CsaV3_2G025120Cucumber (Chinese Long) v3cpicucB261
CSPI05G21830Cla97C08G161210Watermelon (97103) v2cpiwmbB421
CSPI05G21830Bhi04G000509Wax gourdcpiwgoB491
CSPI05G21830Bhi07G001485Wax gourdcpiwgoB516
CSPI05G21830Cucsa.394660Cucumber (Gy14) v1cgycpiB580
CSPI05G21830CmaCh04G017970Cucurbita maxima (Rimu)cmacpiB758
CSPI05G21830CmaCh05G000580Cucurbita maxima (Rimu)cmacpiB814
CSPI05G21830CmoCh04G018980Cucurbita moschata (Rifu)cmocpiB748
CSPI05G21830CmoCh05G000640Cucurbita moschata (Rifu)cmocpiB797
CSPI05G21830Cp4.1LG01g15790Cucurbita pepo (Zucchini)cpecpiB440
CSPI05G21830Cp4.1LG09g06280Cucurbita pepo (Zucchini)cpecpiB042
CSPI05G21830CsGy5G021330Cucumber (Gy14) v2cgybcpiB225
CSPI05G21830CsGy2G017490Cucumber (Gy14) v2cgybcpiB077
CSPI05G21830Carg21847Silver-seed gourdcarcpiB0538
CSPI05G21830Carg14295Silver-seed gourdcarcpiB0275
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CSPI05G21830CSPI02G17520Wild cucumber (PI 183967)cpicpiB076
The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G21830Cucumber (Chinese Long) v3cpicucB284
CSPI05G21830Watermelon (97103) v2cpiwmbB402
CSPI05G21830Cucumber (Gy14) v1cgycpiB076
CSPI05G21830Cucurbita maxima (Rimu)cmacpiB190
CSPI05G21830Cucurbita maxima (Rimu)cmacpiB419
CSPI05G21830Cucurbita moschata (Rifu)cmocpiB176
CSPI05G21830Cucurbita moschata (Rifu)cmocpiB407
CSPI05G21830Watermelon (Charleston Gray)cpiwcgB412
CSPI05G21830Cucurbita pepo (Zucchini)cpecpiB116
CSPI05G21830Cucurbita pepo (Zucchini)cpecpiB837
CSPI05G21830Silver-seed gourdcarcpiB0657
CSPI05G21830Silver-seed gourdcarcpiB1106