CmoCh04G018980 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G018980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Photosystem II core complex proteins psbY
Location	Cmo_Chr04 : 9673233 .. 9673769 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCACCACTCCTTCCCTCAAAGCCCACAACACCCATCTCCCTCCCAATCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGAGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGGACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGGTGGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

mRNA sequence

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCACCACTCCTTCCCTCAAAGCCCACAACACCCATCTCCCTCCCAATCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGAGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGGACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGGTGGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

Coding sequence (CDS)

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCACCACTCCTTCCCTCAAAGCCCACAACACCCATCTCCCTCCCAATCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGAGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGGACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGGTGGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

Homology

[Close]

BLAST of CmoCh04G018980 vs. Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.3e-44
Identity = 111/191 (58.12%), Postives = 137/191 (71.73%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP-ISLPIP-SPKSSLA--GSAIAGAIFS 60
           MAA MAT      KC + N +PP L     + P ISLP P  P  SLA   +A+AGA+FS
Sbjct: 1   MAAAMATAT----KCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TFSFTDAAFAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           + S+++ A A QQIA LA      DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQ 178
           K ++ GLG+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

[Close]

BLAST of CmoCh04G018980 vs. Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-43
Identity = 118/199 (59.30%), Postives = 134/199 (67.34%), Query Frame = 1


Query: 1   MAATMAT-MAILNAKCFTPNRTPPPLLPSKPTT-PISL-PIPSPKSSL--------AGSA 60
           MAATMAT MA+LN KC T N         KPT+ PISL P+    S L           A
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAIFSTFSFTDAAFAAQQIADLAE----GDNRGLALLLPLIPAVAWVLFNILQPALNQ 120
           IAGA+F+T    D AFA QQ+AD+A      DNRGLALLLP+IPA+ WVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INRMRTE-KAVIAGLGLGGLLASG-LVGTPEAMAAE----ASNDARGQLLLIVVAPAILW 179
           IN+MR E KA I GLGL GL  SG L+ TPEA AA       +D RG LLL+VV PAI W
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

[Close]

BLAST of CmoCh04G018980 vs. TrEMBL
Match: A0A0A0KTG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G592810 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.7e-71
Identity = 159/181 (87.85%), Postives = 164/181 (90.61%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTP-NRTPPPLLPSKPTT-PISLPIPS-PKSSLAGSAIAGAIFST 60
           MAATMATMAILNAKCFTP N+TP  LLPSKP T PISLP+P   K SLAG+AIAGAIFST
Sbjct: 1   MAATMATMAILNAKCFTPINKTP--LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFST 60

Query: 61  FSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIA 120
            S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 
Sbjct: 61  LSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIV 120

Query: 121 GLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS 179
           GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRS
Sbjct: 121 GLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS 179

[Close]

BLAST of CmoCh04G018980 vs. TrEMBL
Match: A0A067GTU3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029024mg PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-54
Identity = 131/200 (65.50%), Postives = 152/200 (76.00%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLP--SKPTTPISLPI----------PSPKSSLA-G 60
           MAA MAT A+LNAKCF+ +     + P  +KPT+P+S+            P+  SSLA G
Sbjct: 1   MAAAMATTAVLNAKCFSISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG 60

Query: 61  SAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 120
           +AIAGAIFST S  DAAFAAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQIN
Sbjct: 61  TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120

Query: 121 RMRTEKAVIAGLGLGGLLASGLVGTPE---------AMAAEASNDARGQLLLIVVAPAIL 179
           RMR+ K VI GLGLGGL A+GL+  P          A  AEA++D+RGQLLLIVV PAIL
Sbjct: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180

[Close]

BLAST of CmoCh04G018980 vs. TrEMBL
Match: V4SU74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032789mg PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-54
Identity = 131/200 (65.50%), Postives = 152/200 (76.00%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLP--SKPTTPISLPI----------PSPKSSLA-G 60
           MAA MAT A+LNAKCF+ +     + P  +KPT+P+S+            P+  SSLA G
Sbjct: 1   MAAAMATTAVLNAKCFSISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG 60

Query: 61  SAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 120
           +AIAGAIFST S  DAAFAAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQIN
Sbjct: 61  TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120

Query: 121 RMRTEKAVIAGLGLGGLLASGLVGTPE---------AMAAEASNDARGQLLLIVVAPAIL 179
           RMR+ K VI GLGLGGL A+GL+  P          A  AEA++D+RGQLLLIVV PAIL
Sbjct: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180

[Close]

BLAST of CmoCh04G018980 vs. TrEMBL
Match: A0A067K3B7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17878 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-54
Identity = 132/193 (68.39%), Postives = 148/193 (76.68%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSK-PTTPISL-PIPS-------PKSSLAGSAIA 60
           MAATMATMAILNAKC+    +   + P+K PT PISL PI          K  LA SAIA
Sbjct: 1   MAATMATMAILNAKCYLSISSNKNINPTKQPTKPISLLPIQDLPKGLTMSKPVLASSAIA 60

Query: 61  GAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRT 120
           GA FS+ S +D A AAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQ+NRM+ 
Sbjct: 61  GAFFSSLSLSDPAMAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQLNRMKE 120

Query: 121 EKAVIAGLGLGGLLASGLVGTPE------AMAAEASNDARGQLLLIVVAPAILWVLYNIL 179
            K VI GLG+GGL ASG + TPE      AM A+A+ND RGQLLL VVAPAILWVLYNIL
Sbjct: 121 TKGVIIGLGIGGLAASGFMITPEASANEFAMIADATNDNRGQLLLFVVAPAILWVLYNIL 180

[Close]

BLAST of CmoCh04G018980 vs. TrEMBL
Match: A9PJ80_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 129/197 (65.48%), Postives = 149/197 (75.63%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTT-PISL------------PIPSPKSSLAG 60
           MAATMATMAILNAKC + N     + P+KP+T P+SL              P+  + L G
Sbjct: 1   MAATMATMAILNAKCLSINSNKN-ISPTKPSTKPVSLLSMQNLPKGLTISKPADNTVLTG 60

Query: 61  SAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 120
           +AIAGAIF+T S  + AFAAQQIA++AEGDNRGLALLLPLIPA+AWVLFNILQPALNQIN
Sbjct: 61  TAIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQIN 120

Query: 121 RMRTEKAVIAGLGLGGLLASGLVGTPE------AMAAEASNDARGQLLLIVVAPAILWVL 179
           RMR  K VI GLGLGGL ASG + TP       AM A+A++D RG LLLIVVAPAILWVL
Sbjct: 121 RMRQTKGVIVGLGLGGLAASGFISTPHASASEIAMIADATSDNRGTLLLIVVAPAILWVL 180

[Close]

BLAST of CmoCh04G018980 vs. TAIR10
Match: AT1G67740.1 (AT1G67740.1 photosystem II BY)

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-45
Identity = 111/191 (58.12%), Postives = 137/191 (71.73%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP-ISLPIP-SPKSSLA--GSAIAGAIFS 60
           MAA MAT      KC + N +PP L     + P ISLP P  P  SLA   +A+AGA+FS
Sbjct: 1   MAAAMATAT----KCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TFSFTDAAFAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           + S+++ A A QQIA LA      DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQ 178
           K ++ GLG+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

[Close]

BLAST of CmoCh04G018980 vs. NCBI nr
Match: gi|659090621|ref|XP_008446112.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo])

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-75
Identity = 162/179 (90.50%), Postives = 164/179 (91.62%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFS 60
           MAATMATMAILNAKCFTP    P LLPSKPT PISLP P P K SLAG+AIAGAIFST S
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLS 60

Query: 61  FTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGL 120
             DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI GL
Sbjct: 61  SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 179
           GLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]

BLAST of CmoCh04G018980 vs. NCBI nr
Match: gi|449435015|ref|XP_004135291.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 5.3e-71
Identity = 159/181 (87.85%), Postives = 164/181 (90.61%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTP-NRTPPPLLPSKPTT-PISLPIPS-PKSSLAGSAIAGAIFST 60
           MAATMATMAILNAKCFTP N+TP  LLPSKP T PISLP+P   K SLAG+AIAGAIFST
Sbjct: 1   MAATMATMAILNAKCFTPINKTP--LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFST 60

Query: 61  FSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIA 120
            S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 
Sbjct: 61  LSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIV 120

Query: 121 GLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS 179
           GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRS
Sbjct: 121 GLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS 179

[Close]

BLAST of CmoCh04G018980 vs. NCBI nr
Match: gi|1009153294|ref|XP_015894559.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 223.0 bits (567), Expect = 4.1e-55
Identity = 135/203 (66.50%), Postives = 150/203 (73.89%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPN--RTPPPLLP-SKPTTPISLP-------------IPSPKSS 60
           MAATMATMAILNAKC   N  + P P  P SKPT+ +S+               P+  SS
Sbjct: 1   MAATMATMAILNAKCLNTNSPKIPNPTKPLSKPTSLLSIQNLPKGLTSIKSIEAPNMPSS 60

Query: 61  LAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALN 120
           LAG+AIAGAIFST S  DAA AAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALN
Sbjct: 61  LAGTAIAGAIFSTLSSCDAALAAQQIAEIAEGDNRGLALLLPVIPALAWVLFNILQPALN 120

Query: 121 QINRMRTEKAVIAGLGLGGLLASGLVGTPEAM---------AAEASNDARGQLLLIVVAP 179
           Q+NRMR+ K VI GLGLGGL ASG V TP+A          AA +S D RGQLLL VV P
Sbjct: 121 QLNRMRSSKGVIVGLGLGGLAASGFVSTPDASANEIAMIADAAASSGDNRGQLLLFVVTP 180

[Close]

BLAST of CmoCh04G018980 vs. NCBI nr
Match: gi|802723912|ref|XP_012085559.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Jatropha curcas])

HSP 1 Score: 219.5 bits (558), Expect = 4.5e-54
Identity = 132/193 (68.39%), Postives = 148/193 (76.68%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSK-PTTPISL-PIPS-------PKSSLAGSAIA 60
           MAATMATMAILNAKC+    +   + P+K PT PISL PI          K  LA SAIA
Sbjct: 1   MAATMATMAILNAKCYLSISSNKNINPTKQPTKPISLLPIQDLPKGLTMSKPVLASSAIA 60

Query: 61  GAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRT 120
           GA FS+ S +D A AAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQ+NRM+ 
Sbjct: 61  GAFFSSLSLSDPAMAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQLNRMKE 120

Query: 121 EKAVIAGLGLGGLLASGLVGTPE------AMAAEASNDARGQLLLIVVAPAILWVLYNIL 179
            K VI GLG+GGL ASG + TPE      AM A+A+ND RGQLLL VVAPAILWVLYNIL
Sbjct: 121 TKGVIIGLGIGGLAASGFMITPEASANEFAMIADATNDNRGQLLLFVVAPAILWVLYNIL 180

[Close]

BLAST of CmoCh04G018980 vs. NCBI nr
Match: gi|568861014|ref|XP_006484003.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Citrus sinensis])

HSP 1 Score: 219.5 bits (558), Expect = 4.5e-54
Identity = 131/200 (65.50%), Postives = 152/200 (76.00%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLP--SKPTTPISLPI----------PSPKSSLA-G 60
           MAA MAT A+LNAKCF+ +     + P  +KPT+P+S+            P+  SSLA G
Sbjct: 1   MAAAMATTAVLNAKCFSISSPKSSIKPGATKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG 60

Query: 61  SAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 120
           +AIAGAIFST S  DAAFAAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQIN
Sbjct: 61  TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120

Query: 121 RMRTEKAVIAGLGLGGLLASGLVGTPE---------AMAAEASNDARGQLLLIVVAPAIL 179
           RMR+ K VI GLGLGGL A+GL+  P          A  AEA++D+RGQLLLIVV PAIL
Sbjct: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180

The following BLAST results are available for this feature:

BLAST of CmoCh04G018980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBY_ARATH	7.3e-44	58.12	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]
PSBY_SPIOL	4.7e-43	59.30	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN...	[more]

BLAST of CmoCh04G018980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTG2_CUCSA	3.7e-71	87.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G592810 PE=3 SV=1	[more]
A0A067GTU3_CITSI	3.2e-54	65.50	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029024mg PE=3 SV=1	[more]
V4SU74_9ROSI	3.2e-54	65.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032789mg PE=3 SV=1	[more]
A0A067K3B7_JATCU	3.2e-54	68.39	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17878 PE=3 SV=1	[more]
A9PJ80_9ROSI	1.2e-53	65.48	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]

BLAST of CmoCh04G018980 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67740.1	4.1e-45	58.12	photosystem II BY	[more]

BLAST of CmoCh04G018980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090621\|ref\|XP_008446112.1\|	1.6e-75	90.50	PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi...	[more]
gi\|449435015\|ref\|XP_004135291.1\|	5.3e-71	87.85	PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi...	[more]
gi\|1009153294\|ref\|XP_015894559.1\|	4.1e-55	66.50	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Ziziphus ju...	[more]
gi\|802723912\|ref\|XP_012085559.1\|	4.5e-54	68.39	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Jatropha cu...	[more]
gi\|568861014\|ref\|XP_006484003.1\|	4.5e-54	65.50	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Citrus sine...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009388	PSII_PsbY

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0030145	manganese ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0015979	photosynthesis
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006364	rRNA processing
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009657	plastid organization
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009533	chloroplast stromal thylakoid
molecular_function	GO:0030145	manganese ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G018980.1	CmoCh04G018980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 77..111 score: 10
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 77..109 score: 1.8E-14coord: 143..175 score: 7.5
None	No IPR available	PANTHER	PTHR34790	FAMILY NOT NAMED	coord: 43..178 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G018980	Cucsa.394660	Cucumber (Gy14) v1	cgycmoB1092
CmoCh04G018980	CmaCh04G017970	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G018980	CmaCh05G000580	Cucurbita maxima (Rimu)	cmacmoB785
CmoCh04G018980	Cla010005	Watermelon (97103) v1	cmowmB694
CmoCh04G018980	Cla022723	Watermelon (97103) v1	cmowmB666
CmoCh04G018980	Csa2G350230	Cucumber (Chinese Long) v2	cmocuB682
CmoCh04G018980	Csa5G592810	Cucumber (Chinese Long) v2	cmocuB739
CmoCh04G018980	MELO3C011911	Melon (DHL92) v3.5.1	cmomeB632
CmoCh04G018980	MELO3C010708	Melon (DHL92) v3.5.1	cmomeB673
CmoCh04G018980	ClCG08G017510	Watermelon (Charleston Gray)	cmowcgB683
CmoCh04G018980	CSPI02G17520	Wild cucumber (PI 183967)	cmocpiB693
CmoCh04G018980	CSPI05G21830	Wild cucumber (PI 183967)	cmocpiB748
CmoCh04G018980	Lsi08G016260	Bottle gourd (USVL1VR-Ls)	cmolsiB698
CmoCh04G018980	Lsi04G006360	Bottle gourd (USVL1VR-Ls)	cmolsiB661
CmoCh04G018980	Cp4.1LG01g15790	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G018980	MELO3C011911.2	Melon (DHL92) v3.6.1	cmomedB721
CmoCh04G018980	MELO3C010708.2	Melon (DHL92) v3.6.1	cmomedB761
CmoCh04G018980	CsaV3_5G030690	Cucumber (Chinese Long) v3	cmocucB0875
CmoCh04G018980	CsaV3_2G025120	Cucumber (Chinese Long) v3	cmocucB0808
CmoCh04G018980	Cla97C08G161210	Watermelon (97103) v2	cmowmbB763
CmoCh04G018980	Bhi07G001485	Wax gourd	cmowgoB0890
CmoCh04G018980	Bhi04G000509	Wax gourd	cmowgoB0868
CmoCh04G018980	CsGy5G021330	Cucumber (Gy14) v2	cgybcmoB653
CmoCh04G018980	CsGy2G017490	Cucumber (Gy14) v2	cgybcmoB232
CmoCh04G018980	Carg14295	Silver-seed gourd	carcmoB0343
CmoCh04G018980	Carg21847	Silver-seed gourd	carcmoB0685

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G018980	CmoCh05G000640	Cucurbita moschata (Rifu)	cmocmoB472

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G018980	Silver-seed gourd	carcmoB0858
CmoCh04G018980	Watermelon (97103) v2	cmowmbB730
CmoCh04G018980	Cucurbita moschata (Rifu)	cmocmoB147
CmoCh04G018980	Cucurbita moschata (Rifu)	cmocmoB341
CmoCh04G018980	Cucumber (Gy14) v1	cgycmoB0123
CmoCh04G018980	Cucurbita maxima (Rimu)	cmacmoB189
CmoCh04G018980	Cucurbita maxima (Rimu)	cmacmoB422
CmoCh04G018980	Watermelon (Charleston Gray)	cmowcgB655
CmoCh04G018980	Cucurbita pepo (Zucchini)	cmocpeB646
CmoCh04G018980	Cucurbita pepo (Zucchini)	cmocpeB656
CmoCh04G018980	Cucurbita pepo (Zucchini)	cmocpeB710