CsGy2G017490 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G017490
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	photosystem II core complex proteins psbY, chloroplastic
Location	Chr2 : 27514296 .. 27515057 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTGGCTTTACCTGTGTCTTTCATCTCCTCATCTCATCACTCCTAACATTGTTTTGCCAAAACCCAACCTTTTCTACTTCATTCTGCATCTCTCCTCTACCTGCCAAAGCCCAGAGCTTAGTTCAACCGTAACAAGCAAGTCAACTTCAATGGCAGCAACCATGGCTACAATGGCGGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAACCCACAACACCCAAAAGATAATCCCCAAACCTATCTCCCTTCTCTCTCTCCAAAACCTTCCAAAAGGCCTAATCTCATCAAAATCTAATCAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTGCAACCTTGGGATCATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCAGACGGTGACAACCGTGGTTTAGCCCTTCTGCTACCTCTTATTCCGGCCGTAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTAGGATTAGGTGGATTGACTGCATCAGGGTTTATGTACGCACCTGATGCTTCGGCCAGCGAGATTGCCATGATTGCCGATGCTTCTTCAAGTGATAGCAGGGGCCAGCTTCTTCTGTTTGTCGTAGCACCCGCCATTCTCTGGGTGTTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

mRNA sequence

ATGACTTGGCTTTACCTGTGTCTTTCATCTCCTCATCTCATCACTCCTAACATTGTTTTGCCAAAACCCAACCTTTTCTACTTCATTCTGCATCTCTCCTCTACCTGCCAAAGCCCAGAGCTTAGTTCAACCGTAACAAGCAAGTCAACTTCAATGGCAGCAACCATGGCTACAATGGCGGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAACCCACAACACCCAAAAGATAATCCCCAAACCTATCTCCCTTCTCTCTCTCCAAAACCTTCCAAAAGGCCTAATCTCATCAAAATCTAATCAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTGCAACCTTGGGATCATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCAGACGGTGACAACCGTGGTTTAGCCCTTCTGCTACCTCTTATTCCGGCCGTAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTAGGATTAGGTGGATTGACTGCATCAGGGTTTATGTACGCACCTGATGCTTCGGCCAGCGAGATTGCCATGATTGCCGATGCTTCTTCAAGTGATAGCAGGGGCCAGCTTCTTCTGTTTGTCGTAGCACCCGCCATTCTCTGGGTGTTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

Coding sequence (CDS)

ATGACTTGGCTTTACCTGTGTCTTTCATCTCCTCATCTCATCACTCCTAACATTGTTTTGCCAAAACCCAACCTTTTCTACTTCATTCTGCATCTCTCCTCTACCTGCCAAAGCCCAGAGCTTAGTTCAACCGTAACAAGCAAGTCAACTTCAATGGCAGCAACCATGGCTACAATGGCGGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAACCCACAACACCCAAAAGATAATCCCCAAACCTATCTCCCTTCTCTCTCTCCAAAACCTTCCAAAAGGCCTAATCTCATCAAAATCTAATCAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTGCAACCTTGGGATCATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCAGACGGTGACAACCGTGGTTTAGCCCTTCTGCTACCTCTTATTCCGGCCGTAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTAGGATTAGGTGGATTGACTGCATCAGGGTTTATGTACGCACCTGATGCTTCGGCCAGCGAGATTGCCATGATTGCCGATGCTTCTTCAAGTGATAGCAGGGGCCAGCTTCTTCTGTTTGTCGTAGCACCCGCCATTCTCTGGGTGTTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

Protein sequence

MTWLYLCLSSPHLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

Homology

[Close]

BLAST of CsGy2G017490 vs. NCBI nr
Match: KGN62340.1 (hypothetical protein Csa_2G350230 [Cucumis sativus])

HSP 1 Score: 453.0 bits (1164), Expect = 6.8e-124
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MTWLYLCLSSPHLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAXXXXXXX 60
           MTWLYLCLSSPHLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAXXXXXXX
Sbjct: 1   MTWLYLCLSSPHLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAXXXXXXX 60

Query: 61  XXXXKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGA 120
           XXXXKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGA
Sbjct: 61  XXXXKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGA 120

Query: 121 VFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSD 180
           VFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSD
Sbjct: 121 VFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSD 180

Query: 181 KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL 240
           KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL
Sbjct: 181 KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL 240

Query: 241 QPALNQLNRMRSE 254
           QPALNQLNRMRSE
Sbjct: 241 QPALNQLNRMRSE 253

[Close]

BLAST of CsGy2G017490 vs. NCBI nr
Match: XP_008444395.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo])

HSP 1 Score: 414.1 bits (1063), Expect = 3.5e-112
Identity = 234/253 (92.49%), Postives = 238/253 (94.07%), Query Frame = 0


Query: 1   MTWLYLCLSSPHLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAXXXXXXX 60
           MTWLYLCL SPHLITPNIVLPKPN FYFILHLSSTCQSPELSST TS      XXXXXXX
Sbjct: 1   MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSXXXXXXXXXXXXX 60

Query: 61  XXXXKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGA 120
           XXXX      STKTHNTQKIIPKPISLLSLQNLPKGLISSKSN+NSNLSTFLSSTAIAGA
Sbjct: 61  XXXXXXXXXXSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGA 120

Query: 121 VFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSD 180
           VFATLG+SDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPALNQINRMRSD
Sbjct: 121 VFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSD 180

Query: 181 KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL 240
           KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL
Sbjct: 181 KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL 240

Query: 241 QPALNQLNRMRSE 254
           QPALNQLNRMRS+
Sbjct: 241 QPALNQLNRMRSK 253

[Close]

BLAST of CsGy2G017490 vs. NCBI nr
Match: XP_004142959.2 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus])

HSP 1 Score: 353.2 bits (905), Expect = 7.3e-94
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 65  KCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFAT 124
           KCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFAT
Sbjct: 14  KCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFAT 73

Query: 125 LGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVI 184
           LGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVI
Sbjct: 74  LGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVI 133

Query: 185 IGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL 244
           IGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL
Sbjct: 134 IGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL 193

Query: 245 NQLNRMRSE 254
           NQLNRMRSE
Sbjct: 194 NQLNRMRSE 202

[Close]

BLAST of CsGy2G017490 vs. NCBI nr
Match: XP_022131700.1 (photosystem II core complex proteins psbY, chloroplastic [Momordica charantia])

HSP 1 Score: 311.6 bits (797), Expect = 2.4e-81
Identity = 166/189 (87.83%), Postives = 176/189 (93.12%), Query Frame = 0


Query: 65  KCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFAT 124
           KCTSINS+K H T K I  PISLLSLQNLPK LISSK++QN NLSTFLSSTAIAGAVF+ 
Sbjct: 14  KCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIAGAVFSA 73

Query: 125 LGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVI 184
             SSDPAFAAQQIAEIAA+GDNRGLALLLPLIPA+AWVLFNILQPALNQINRMRSDKGVI
Sbjct: 74  FSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVI 133

Query: 185 IGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL 244
           IGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYNILQPAL
Sbjct: 134 IGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPAILWVLYNILQPAL 193

Query: 245 NQLNRMRSE 254
           NQLNRMRSE
Sbjct: 194 NQLNRMRSE 202

[Close]

BLAST of CsGy2G017490 vs. NCBI nr
Match: XP_002285325.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Vitis vinifera])

HSP 1 Score: 278.1 bits (710), Expect = 3.0e-71
Identity = 150/189 (79.37%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 65  KCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFAT 124
           KC SINS K  N  K   KPISLLS+QNLPKGL + KS++N NLST L+ TAIAGA+F+T
Sbjct: 14  KCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTSLAGTAIAGAIFST 73

Query: 125 LGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVI 184
           L S DPA AAQQIAEI ADGDNRGLALLLP+IPA+AWVLFNILQPALNQ+N+MRS KGVI
Sbjct: 74  LSSCDPALAAQQIAEI-ADGDNRGLALLLPIIPAIAWVLFNILQPALNQLNKMRSTKGVI 133

Query: 185 IGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL 244
           IGLGLGGL ASGFM  P ASASEIA +ADA+SSD+RGQLLLFVV PAILWVLYNILQPAL
Sbjct: 134 IGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPAILWVLYNILQPAL 193

Query: 245 NQLNRMRSE 254
           NQLNRMRSE
Sbjct: 194 NQLNRMRSE 201

[Close]

BLAST of CsGy2G017490 vs. TAIR10
Match: AT1G67740.1 (photosystem II BY)

HSP 1 Score: 129.0 bits (323), Expect = 4.1e-30
Identity = 71/144 (49.31%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 112 LSSTAIAGAVFATLGSSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAVAWVLFNILQ 171
           ++STA+AGAVF++L  S+PA A QQIA++A   A  DNRGLALLLP++PA+AWVL+NILQ
Sbjct: 45  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 104

Query: 172 PALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVV 231
           PA+NQ+N+MR  KG+++GLG+ G                                     
Sbjct: 105 PAINQVNKMRESKGIVVGLGI-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 164

Query: 232 APAILWVLYNILQPALNQLNRMRS 253
             A+LWVLYNILQPALNQ+N+MRS
Sbjct: 165 XXALLWVLYNILQPALNQINKMRS 187

[Close]

BLAST of CsGy2G017490 vs. Swiss-Prot
Match: sp|P80470|PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 8.6e-46
Identity = 116/195 (59.49%), Postives = 141/195 (72.31%), Query Frame = 0


Query: 65  KCTSINSTKTHNTQ-KIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFA 124
           KC ++N+ KT +T  K   KPISL      P GL +SK      LS  +++ AIAGAVFA
Sbjct: 15  KCLTLNTNKTTSTSPKPTSKPISL-----SPLGLSNSKLPM--GLSPIITAPAIAGAVFA 74

Query: 125 TLGSSDPAFAAQQIAEIAAD---GDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSD 184
           TLGS DPAFA QQ+A+IAA+    DNRGLALLLP+IPA+ WVLFNILQPALNQIN+MR++
Sbjct: 75  TLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNE 134

Query: 185 -KGVIIGLGLGGLTASGFMYA-PDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 244
            K  I+GLGL GL  SG + A P+A A+   +   A  SD+RG LLL VV PAI WVL+N
Sbjct: 135 KKAFIVGLGLSGLATSGLLLATPEAQAASEEI---ARGSDNRGTLLLLVVLPAIGWVLFN 194

Query: 245 ILQPALNQLNRMRSE 254
           ILQPALNQLN+MRS+
Sbjct: 195 ILQPALNQLNKMRSQ 199

[Close]

BLAST of CsGy2G017490 vs. Swiss-Prot
Match: sp|O49347|PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.3e-29
Identity = 71/144 (49.31%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 112 LSSTAIAGAVFATLGSSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAVAWVLFNILQ 171
           ++STA+AGAVF++L  S+PA A QQIA++A   A  DNRGLALLLP++PA+AWVL+NILQ
Sbjct: 45  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 104

Query: 172 PALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVV 231
           PA+NQ+N+MR  KG+++GLG+ G                                     
Sbjct: 105 PAINQVNKMRESKGIVVGLGI-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 164

Query: 232 APAILWVLYNILQPALNQLNRMRS 253
             A+LWVLYNILQPALNQ+N+MRS
Sbjct: 165 XXALLWVLYNILQPALNQINKMRS 187

[Close]

BLAST of CsGy2G017490 vs. TrEMBL
Match: tr|A0A0A0LKA1|A0A0A0LKA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 4.5e-124
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MTWLYLCLSSPHLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAXXXXXXX 60
           MTWLYLCLSSPHLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAXXXXXXX
Sbjct: 1   MTWLYLCLSSPHLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAXXXXXXX 60

Query: 61  XXXXKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGA 120
           XXXXKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGA
Sbjct: 61  XXXXKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGA 120

Query: 121 VFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSD 180
           VFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSD
Sbjct: 121 VFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSD 180

Query: 181 KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL 240
           KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL
Sbjct: 181 KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL 240

Query: 241 QPALNQLNRMRSE 254
           QPALNQLNRMRSE
Sbjct: 241 QPALNQLNRMRSE 253

[Close]

BLAST of CsGy2G017490 vs. TrEMBL
Match: tr|A0A1S3B9R1|A0A1S3B9R1_CUCME (photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487736 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 2.3e-112
Identity = 234/253 (92.49%), Postives = 238/253 (94.07%), Query Frame = 0


Query: 1   MTWLYLCLSSPHLITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAXXXXXXX 60
           MTWLYLCL SPHLITPNIVLPKPN FYFILHLSSTCQSPELSST TS      XXXXXXX
Sbjct: 1   MTWLYLCLPSPHLITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSXXXXXXXXXXXXX 60

Query: 61  XXXXKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGA 120
           XXXX      STKTHNTQKIIPKPISLLSLQNLPKGLISSKSN+NSNLSTFLSSTAIAGA
Sbjct: 61  XXXXXXXXXXSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGA 120

Query: 121 VFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSD 180
           VFATLG+SDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPALNQINRMRSD
Sbjct: 121 VFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSD 180

Query: 181 KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL 240
           KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL
Sbjct: 181 KGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNIL 240

Query: 241 QPALNQLNRMRSE 254
           QPALNQLNRMRS+
Sbjct: 241 QPALNQLNRMRSK 253

[Close]

BLAST of CsGy2G017490 vs. TrEMBL
Match: tr|F6GVJ9|F6GVJ9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.0e-71
Identity = 150/189 (79.37%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 65  KCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFAT 124
           KC SINS K  N  K   KPISLLS+QNLPKGL + KS++N NLST L+ TAIAGA+F+T
Sbjct: 14  KCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTSLAGTAIAGAIFST 73

Query: 125 LGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVI 184
           L S DPA AAQQIAEI ADGDNRGLALLLP+IPA+AWVLFNILQPALNQ+N+MRS KGVI
Sbjct: 74  LSSCDPALAAQQIAEI-ADGDNRGLALLLPIIPAIAWVLFNILQPALNQLNKMRSTKGVI 133

Query: 185 IGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL 244
           IGLGLGGL ASGFM  P ASASEIA +ADA+SSD+RGQLLLFVV PAILWVLYNILQPAL
Sbjct: 134 IGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPAILWVLYNILQPAL 193

Query: 245 NQLNRMRSE 254
           NQLNRMRSE
Sbjct: 194 NQLNRMRSE 201

[Close]

BLAST of CsGy2G017490 vs. TrEMBL
Match: tr|A0A1U8KGA8|A0A1U8KGA8_GOSHI (photosystem II core complex proteins psbY, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107916725 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.4e-69
Identity = 146/189 (77.25%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 65  KCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFAT 124
           KC SI+STK  +  K  PKP SLLS+QNLPKGL  SK   NSNL + L+ +AIAGA+F+T
Sbjct: 14  KCLSISSTKMSSPTKPTPKPFSLLSMQNLPKGLTISKPANNSNLPSSLAGSAIAGAIFST 73

Query: 125 LGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVI 184
           L S DPA AAQQIAEI A+GDNRGLALLLP+IPA+AWVLFNILQPALNQ+NRMRS KGVI
Sbjct: 74  LSSCDPALAAQQIAEI-AEGDNRGLALLLPIIPAIAWVLFNILQPALNQLNRMRSSKGVI 133

Query: 185 IGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL 244
           IGLGLGGL ASGFM  P+ASASEIAM+ADASSSD+RG LLLFVVAPA+LWV YNILQPAL
Sbjct: 134 IGLGLGGLAASGFMSTPEASASEIAMVADASSSDNRGTLLLFVVAPALLWVAYNILQPAL 193

Query: 245 NQLNRMRSE 254
           NQLNRMRS+
Sbjct: 194 NQLNRMRSQ 201

[Close]

BLAST of CsGy2G017490 vs. TrEMBL
Match: tr|A0A1U8KV33|A0A1U8KV33_GOSHI (photosystem II core complex proteins psbY, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107920999 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.1e-69
Identity = 145/189 (76.72%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 65  KCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFAT 124
           KC SI+STK  +  K  PKP SLLS+QNLPKGL  SK   NSNL + L+ +AIAGA+F+T
Sbjct: 14  KCLSISSTKMSSPTKPTPKPFSLLSMQNLPKGLTISKPANNSNLPSSLAGSAIAGAIFST 73

Query: 125 LGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVI 184
           L S DPA AAQQIAEI A+GDNRGLALLLP+IPA+AWVLFNILQPALNQ+NRMRS KGVI
Sbjct: 74  LSSCDPALAAQQIAEI-AEGDNRGLALLLPIIPAIAWVLFNILQPALNQLNRMRSSKGVI 133

Query: 185 IGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL 244
           IGLGLGGL ASGFM  P+ASASEIAM+ADA+SSD+RG LLLFVVAPA+LWV YNILQPAL
Sbjct: 134 IGLGLGGLAASGFMSTPEASASEIAMVADAASSDNRGTLLLFVVAPALLWVAYNILQPAL 193

Query: 245 NQLNRMRSE 254
           NQLNRMRS+
Sbjct: 194 NQLNRMRSQ 201

The following BLAST results are available for this feature:

BLAST of CsGy2G017490 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62340.1	6.8e-124	100.00	hypothetical protein Csa_2G350230 [Cucumis sativus]	[more]
XP_008444395.1	3.5e-112	92.49	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis mel...	[more]
XP_004142959.2	7.3e-94	100.00	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis sat...	[more]
XP_022131700.1	2.4e-81	87.83	photosystem II core complex proteins psbY, chloroplastic [Momordica charantia]	[more]
XP_002285325.1	3.0e-71	79.37	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Vitis vinif...	[more]

BLAST of CsGy2G017490 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67740.1	4.1e-30	49.31	photosystem II BY	[more]

BLAST of CsGy2G017490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P80470\|PSBY_SPIOL	8.6e-46	59.49	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]
sp\|O49347\|PSBY_ARATH	7.3e-29	49.31	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of CsGy2G017490 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LKA1\|A0A0A0LKA1_CUCSA	4.5e-124	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1	[more]
tr\|A0A1S3B9R1\|A0A1S3B9R1_CUCME	2.3e-112	92.49	photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656...	[more]
tr\|F6GVJ9\|F6GVJ9_VITVI	2.0e-71	79.37	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=...	[more]
tr\|A0A1U8KGA8\|A0A1U8KGA8_GOSHI	1.4e-69	77.25	photosystem II core complex proteins psbY, chloroplastic-like OS=Gossypium hirsu...	[more]
tr\|A0A1U8KV33\|A0A1U8KV33_GOSHI	3.1e-69	76.72	photosystem II core complex proteins psbY, chloroplastic-like OS=Gossypium hirsu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0030145	manganese ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0009523	photosystem II

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR038760	PsbY_plant
IPR009388	PSII_PsbY

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G017490.1	CsGy2G017490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 145..177 e-value: 3.1E-14 score: 52.5 coord: 218..250 e-value: 2.5E-10 score: 39.9
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 145..179 score: 11.004
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	FAMILY NOT NAMED	coord: 54..253

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G017490	Cla010005	Watermelon (97103) v1	cgybwmB118
CsGy2G017490	Csa2G350230	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G017490	Csa5G592810	Cucumber (Chinese Long) v2	cgybcuB076
CsGy2G017490	MELO3C011911	Melon (DHL92) v3.5.1	cgybmeB077
CsGy2G017490	CSPI02G17520	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G017490	CSPI05G21830	Wild cucumber (PI 183967)	cgybcpiB077
CsGy2G017490	CmaCh05G000580	Cucurbita maxima (Rimu)	cgybcmaB250
CsGy2G017490	CmaCh04G017970	Cucurbita maxima (Rimu)	cgybcmaB244
CsGy2G017490	CmoCh04G018980	Cucurbita moschata (Rifu)	cgybcmoB232
CsGy2G017490	CmoCh05G000640	Cucurbita moschata (Rifu)	cgybcmoB238
CsGy2G017490	Lsi04G006360	Bottle gourd (USVL1VR-Ls)	cgyblsiB105
CsGy2G017490	Cp4.1LG09g06280	Cucurbita pepo (Zucchini)	cgybcpeB154
CsGy2G017490	Cp4.1LG01g15790	Cucurbita pepo (Zucchini)	cgybcpeB210
CsGy2G017490	MELO3C011911.2	Melon (DHL92) v3.6.1	cgybmedB073
CsGy2G017490	CsaV3_2G025120	Cucumber (Chinese Long) v3	cgybcucB065
CsGy2G017490	CsaV3_5G030690	Cucumber (Chinese Long) v3	cgybcucB083
CsGy2G017490	Cla97C08G161210	Watermelon (97103) v2	cgybwmbB156
CsGy2G017490	Bhi07G001485	Wax gourd	cgybwgoB189
CsGy2G017490	Carg14295	Silver-seed gourd	carcgybB0257
CsGy2G017490	Carg21847	Silver-seed gourd	carcgybB0506

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsGy2G017490	CsGy5G021330	Cucumber (Gy14) v2	cgybcgybB059

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G017490	Wax gourd	cgybwgoB157
CsGy2G017490	Cucurbita maxima (Rimu)	cgybcmaB170
CsGy2G017490	Cucurbita maxima (Rimu)	cgybcmaB198
CsGy2G017490	Cucurbita moschata (Rifu)	cgybcmoB162
CsGy2G017490	Cucurbita pepo (Zucchini)	cgybcpeB161
CsGy2G017490	Cucurbita pepo (Zucchini)	cgybcpeB263
CsGy2G017490	Melon (DHL92) v3.6.1	cgybmedB101
CsGy2G017490	Bottle gourd (USVL1VR-Ls)	cgyblsiB129
CsGy2G017490	Melon (DHL92) v3.5.1	cgybmeB102
CsGy2G017490	Watermelon (Charleston Gray)	cgybwcgB130
CsGy2G017490	Watermelon (Charleston Gray)	cgybwcgB155
CsGy2G017490	Watermelon (97103) v1	cgybwmB108
CsGy2G017490	Wild cucumber (PI 183967)	cgybcpiB052
CsGy2G017490	Silver-seed gourd	carcgybB0622
CsGy2G017490	Watermelon (97103) v2	cgybwmbB125