CmaCh04G017970 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G017970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Photosystem II core complex proteins psbY
Location	Cma_Chr04 : 9071874 .. 9072410 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCTACCACTCCTTCCCTCAAAGCCCACAAGACCCATCTCCCTCCCAATCCCATCTCCCAAATCTTCTCTCGCTGGATCCGCCATTGCCGGAGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGGACCGAGAAGGCGGTGATTGCAGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGGTGGGGACGCCGGAGGCAATGGCGGCAGAGGCTTCCAACGACGCGAGAGGACAGCTGCTACTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

mRNA sequence

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCTACCACTCCTTCCCTCAAAGCCCACAAGACCCATCTCCCTCCCAATCCCATCTCCCAAATCTTCTCTCGCTGGATCCGCCATTGCCGGAGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGGACCGAGAAGGCGGTGATTGCAGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGGTGGGGACGCCGGAGGCAATGGCGGCAGAGGCTTCCAACGACGCGAGAGGACAGCTGCTACTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

Coding sequence (CDS)

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCTACCACTCCTTCCCTCAAAGCCCACAAGACCCATCTCCCTCCCAATCCCATCTCCCAAATCTTCTCTCGCTGGATCCGCCATTGCCGGAGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGGACCGAGAAGGCGGTGATTGCAGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGGTGGGGACGCCGGAGGCAATGGCGGCAGAGGCTTCCAACGACGCGAGAGGACAGCTGCTACTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

Protein sequence

MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

Homology

[Close]

BLAST of CmaCh04G017970 vs. Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-43
Identity = 110/191 (57.59%), Postives = 137/191 (71.73%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPLPLLPSKPTRP-ISLPIP-SPKSSLA--GSAIAGAIFS 60
           MAA MAT      KC + N +P  L     ++P ISLP P  P  SLA   +A+AGA+FS
Sbjct: 1   MAAAMATAT----KCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TFSFTDAAFAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           + S+++ A A QQIA LA      DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQ 178
           K ++ GLG+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

[Close]

BLAST of CmaCh04G017970 vs. Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-43
Identity = 118/199 (59.30%), Postives = 134/199 (67.34%), Query Frame = 1


Query: 1   MAATMAT-MAILNAKCFTPNRTPLPLLPSKPT-RPISL-PIPSPKSSL--------AGSA 60
           MAATMAT MA+LN KC T N         KPT +PISL P+    S L           A
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAIFSTFSFTDAAFAAQQIADLAE----GDNRGLALLLPLIPAVAWVLFNILQPALNQ 120
           IAGA+F+T    D AFA QQ+AD+A      DNRGLALLLP+IPA+ WVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INRMRTE-KAVIAGLGLGGLLASG-LVGTPEAMAAE----ASNDARGQLLLIVVAPAILW 179
           IN+MR E KA I GLGL GL  SG L+ TPEA AA       +D RG LLL+VV PAI W
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

[Close]

BLAST of CmaCh04G017970 vs. TrEMBL
Match: A0A0A0KTG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G592810 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 9.8e-72
Identity = 159/181 (87.85%), Postives = 165/181 (91.16%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTP-NRTPLPLLPSKP-TRPISLPIPS-PKSSLAGSAIAGAIFST 60
           MAATMATMAILNAKCFTP N+TPL  LPSKP T+PISLP+P   K SLAG+AIAGAIFST
Sbjct: 1   MAATMATMAILNAKCFTPINKTPL--LPSKPATKPISLPLPILTKPSLAGTAIAGAIFST 60

Query: 61  FSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIA 120
            S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 
Sbjct: 61  LSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIV 120

Query: 121 GLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS 179
           GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRS
Sbjct: 121 GLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS 179

[Close]

BLAST of CmaCh04G017970 vs. TrEMBL
Match: A0A067K3B7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17878 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.4e-55
Identity = 132/193 (68.39%), Postives = 149/193 (77.20%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPLPLLPSK-PTRPISL-PIPS-------PKSSLAGSAIA 60
           MAATMATMAILNAKC+    +   + P+K PT+PISL PI          K  LA SAIA
Sbjct: 1   MAATMATMAILNAKCYLSISSNKNINPTKQPTKPISLLPIQDLPKGLTMSKPVLASSAIA 60

Query: 61  GAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRT 120
           GA FS+ S +D A AAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQ+NRM+ 
Sbjct: 61  GAFFSSLSLSDPAMAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQLNRMKE 120

Query: 121 EKAVIAGLGLGGLLASGLVGTPE------AMAAEASNDARGQLLLIVVAPAILWVLYNIL 179
            K VI GLG+GGL ASG + TPE      AM A+A+ND RGQLLL VVAPAILWVLYNIL
Sbjct: 121 TKGVIIGLGIGGLAASGFMITPEASANEFAMIADATNDNRGQLLLFVVAPAILWVLYNIL 180

[Close]

BLAST of CmaCh04G017970 vs. TrEMBL
Match: A0A067GTU3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029024mg PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.4e-54
Identity = 131/200 (65.50%), Postives = 151/200 (75.50%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPLPLLP--SKPTRPISLPI----------PSPKSSLA-G 60
           MAA MAT A+LNAKCF+ +     + P  +KPT P+S+            P+  SSLA G
Sbjct: 1   MAAAMATTAVLNAKCFSISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG 60

Query: 61  SAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 120
           +AIAGAIFST S  DAAFAAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQIN
Sbjct: 61  TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120

Query: 121 RMRTEKAVIAGLGLGGLLASGLVGTPE---------AMAAEASNDARGQLLLIVVAPAIL 179
           RMR+ K VI GLGLGGL A+GL+  P          A  AEA++D+RGQLLLIVV PAIL
Sbjct: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180

[Close]

BLAST of CmaCh04G017970 vs. TrEMBL
Match: V4SU74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032789mg PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.4e-54
Identity = 131/200 (65.50%), Postives = 151/200 (75.50%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPLPLLP--SKPTRPISLPI----------PSPKSSLA-G 60
           MAA MAT A+LNAKCF+ +     + P  +KPT P+S+            P+  SSLA G
Sbjct: 1   MAAAMATTAVLNAKCFSISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG 60

Query: 61  SAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 120
           +AIAGAIFST S  DAAFAAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQIN
Sbjct: 61  TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120

Query: 121 RMRTEKAVIAGLGLGGLLASGLVGTPE---------AMAAEASNDARGQLLLIVVAPAIL 179
           RMR+ K VI GLGLGGL A+GL+  P          A  AEA++D+RGQLLLIVV PAIL
Sbjct: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180

[Close]

BLAST of CmaCh04G017970 vs. TrEMBL
Match: A9PIV1_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-54
Identity = 127/196 (64.80%), Postives = 146/196 (74.49%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISL------------PIPSPKSSLAGS 60
           MAATMATMAILNAKC + N       P   T+P+SL              P+  + L G+
Sbjct: 1   MAATMATMAILNAKCLSINSIKNISPPKPSTKPVSLLSMLNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+T S  + AFAAQQIA++AEGDNRG+ALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIAGLGLGGLLASGLVGTPE------AMAAEASNDARGQLLLIVVAPAILWVLY 179
           MR  K VI GLGLGGL ASG + TP+      AM AEA++D RG LLLIVVAPAILWVLY
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPDASASEIAMIAEAASDNRGTLLLIVVAPAILWVLY 180

[Close]

BLAST of CmaCh04G017970 vs. TAIR10
Match: AT1G67740.1 (AT1G67740.1 photosystem II BY)

HSP 1 Score: 177.6 bits (449), Expect = 7.0e-45
Identity = 110/191 (57.59%), Postives = 137/191 (71.73%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPLPLLPSKPTRP-ISLPIP-SPKSSLA--GSAIAGAIFS 60
           MAA MAT      KC + N +P  L     ++P ISLP P  P  SLA   +A+AGA+FS
Sbjct: 1   MAAAMATAT----KCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TFSFTDAAFAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           + S+++ A A QQIA LA      DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQ 178
           K ++ GLG+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

[Close]

BLAST of CmaCh04G017970 vs. NCBI nr
Match: gi|659090621|ref|XP_008446112.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo])

HSP 1 Score: 292.7 bits (748), Expect = 4.2e-76
Identity = 164/180 (91.11%), Postives = 169/180 (93.89%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTP-NRTPLPLLPSKPTRPISLPIPSP-KSSLAGSAIAGAIFSTF 60
           MAATMATMAILNAKCFTP N+TP+ LLPSKPT+PISLP P P K SLAG+AIAGAIFST 
Sbjct: 1   MAATMATMAILNAKCFTPINKTPV-LLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTL 60

Query: 61  SFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAG 120
           S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI G
Sbjct: 61  SSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120

Query: 121 LGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 179
           LGLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Sbjct: 121 LGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]

BLAST of CmaCh04G017970 vs. NCBI nr
Match: gi|449435015|ref|XP_004135291.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.4e-71
Identity = 159/181 (87.85%), Postives = 165/181 (91.16%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTP-NRTPLPLLPSKP-TRPISLPIPS-PKSSLAGSAIAGAIFST 60
           MAATMATMAILNAKCFTP N+TPL  LPSKP T+PISLP+P   K SLAG+AIAGAIFST
Sbjct: 1   MAATMATMAILNAKCFTPINKTPL--LPSKPATKPISLPLPILTKPSLAGTAIAGAIFST 60

Query: 61  FSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIA 120
            S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 
Sbjct: 61  LSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIV 120

Query: 121 GLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS 179
           GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRS
Sbjct: 121 GLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS 179

[Close]

BLAST of CmaCh04G017970 vs. NCBI nr
Match: gi|1009153294|ref|XP_015894559.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 224.6 bits (571), Expect = 1.4e-55
Identity = 133/207 (64.25%), Postives = 147/207 (71.01%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPI--------------------PS 60
           MAATMATMAILNAKC   N   +P     PT+P+S P                     P+
Sbjct: 1   MAATMATMAILNAKCLNTNSPKIP----NPTKPLSKPTSLLSIQNLPKGLTSIKSIEAPN 60

Query: 61  PKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ 120
             SSLAG+AIAGAIFST S  DAA AAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQ
Sbjct: 61  MPSSLAGTAIAGAIFSTLSSCDAALAAQQIAEIAEGDNRGLALLLPVIPALAWVLFNILQ 120

Query: 121 PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAM---------AAEASNDARGQLLLI 179
           PALNQ+NRMR+ K VI GLGLGGL ASG V TP+A          AA +S D RGQLLL 
Sbjct: 121 PALNQLNRMRSSKGVIVGLGLGGLAASGFVSTPDASANEIAMIADAAASSGDNRGQLLLF 180

[Close]

BLAST of CmaCh04G017970 vs. NCBI nr
Match: gi|802723912|ref|XP_012085559.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Jatropha curcas])

HSP 1 Score: 221.9 bits (564), Expect = 9.2e-55
Identity = 132/193 (68.39%), Postives = 149/193 (77.20%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPLPLLPSK-PTRPISL-PIPS-------PKSSLAGSAIA 60
           MAATMATMAILNAKC+    +   + P+K PT+PISL PI          K  LA SAIA
Sbjct: 1   MAATMATMAILNAKCYLSISSNKNINPTKQPTKPISLLPIQDLPKGLTMSKPVLASSAIA 60

Query: 61  GAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRT 120
           GA FS+ S +D A AAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQ+NRM+ 
Sbjct: 61  GAFFSSLSLSDPAMAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQLNRMKE 120

Query: 121 EKAVIAGLGLGGLLASGLVGTPE------AMAAEASNDARGQLLLIVVAPAILWVLYNIL 179
            K VI GLG+GGL ASG + TPE      AM A+A+ND RGQLLL VVAPAILWVLYNIL
Sbjct: 121 TKGVIIGLGIGGLAASGFMITPEASANEFAMIADATNDNRGQLLLFVVAPAILWVLYNIL 180

[Close]

BLAST of CmaCh04G017970 vs. NCBI nr
Match: gi|568861014|ref|XP_006484003.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Citrus sinensis])

HSP 1 Score: 219.9 bits (559), Expect = 3.5e-54
Identity = 131/200 (65.50%), Postives = 151/200 (75.50%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPNRTPLPLLP--SKPTRPISLPI----------PSPKSSLA-G 60
           MAA MAT A+LNAKCF+ +     + P  +KPT P+S+            P+  SSLA G
Sbjct: 1   MAAAMATTAVLNAKCFSISSPKSSIKPGATKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG 60

Query: 61  SAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 120
           +AIAGAIFST S  DAAFAAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQIN
Sbjct: 61  TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120

Query: 121 RMRTEKAVIAGLGLGGLLASGLVGTPE---------AMAAEASNDARGQLLLIVVAPAIL 179
           RMR+ K VI GLGLGGL A+GL+  P          A  AEA++D+RGQLLLIVV PAIL
Sbjct: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180

The following BLAST results are available for this feature:

BLAST of CmaCh04G017970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBY_ARATH	1.2e-43	57.59	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]
PSBY_SPIOL	1.2e-43	59.30	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN...	[more]

BLAST of CmaCh04G017970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTG2_CUCSA	9.8e-72	87.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G592810 PE=3 SV=1	[more]
A0A067K3B7_JATCU	6.4e-55	68.39	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17878 PE=3 SV=1	[more]
A0A067GTU3_CITSI	2.4e-54	65.50	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029024mg PE=3 SV=1	[more]
V4SU74_9ROSI	2.4e-54	65.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032789mg PE=3 SV=1	[more]
A9PIV1_9ROSI	3.2e-54	64.80	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]

BLAST of CmaCh04G017970 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67740.1	7.0e-45	57.59	photosystem II BY	[more]

BLAST of CmaCh04G017970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090621\|ref\|XP_008446112.1\|	4.2e-76	91.11	PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi...	[more]
gi\|449435015\|ref\|XP_004135291.1\|	1.4e-71	87.85	PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi...	[more]
gi\|1009153294\|ref\|XP_015894559.1\|	1.4e-55	64.25	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Ziziphus ju...	[more]
gi\|802723912\|ref\|XP_012085559.1\|	9.2e-55	68.39	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Jatropha cu...	[more]
gi\|568861014\|ref\|XP_006484003.1\|	3.5e-54	65.50	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Citrus sine...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009388	PSII_PsbY

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0030145	manganese ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0016043	cellular component organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009657	plastid organization
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044260	cellular macromolecule metabolic process
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009533	chloroplast stromal thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0030145	manganese ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G017970.1	CmaCh04G017970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 77..111 score: 10
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 77..109 score: 1.8E-14coord: 143..175 score: 7.5
None	No IPR available	PANTHER	PTHR34790	FAMILY NOT NAMED	coord: 43..178 score: 4.8
None	No IPR available	PANTHER	PTHR34790:SF1	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 43..178 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G017970	Cucsa.394660	Cucumber (Gy14) v1	cgycmaB1093
CmaCh04G017970	Cla010005	Watermelon (97103) v1	cmawmB700
CmaCh04G017970	Cla022723	Watermelon (97103) v1	cmawmB670
CmaCh04G017970	Csa2G350230	Cucumber (Chinese Long) v2	cmacuB692
CmaCh04G017970	Csa5G592810	Cucumber (Chinese Long) v2	cmacuB749
CmaCh04G017970	MELO3C010708	Melon (DHL92) v3.5.1	cmameB681
CmaCh04G017970	MELO3C011911	Melon (DHL92) v3.5.1	cmameB641
CmaCh04G017970	ClCG08G017510	Watermelon (Charleston Gray)	cmawcgB681
CmaCh04G017970	CSPI02G17520	Wild cucumber (PI 183967)	cmacpiB700
CmaCh04G017970	CSPI05G21830	Wild cucumber (PI 183967)	cmacpiB758
CmaCh04G017970	CmoCh04G018980	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G017970	CmoCh05G000640	Cucurbita moschata (Rifu)	cmacmoB747
CmaCh04G017970	Lsi08G016260	Bottle gourd (USVL1VR-Ls)	cmalsiB704
CmaCh04G017970	Lsi04G006360	Bottle gourd (USVL1VR-Ls)	cmalsiB670
CmaCh04G017970	Cp4.1LG01g15790	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G017970	MELO3C011911.2	Melon (DHL92) v3.6.1	cmamedB727
CmaCh04G017970	MELO3C010708.2	Melon (DHL92) v3.6.1	cmamedB764
CmaCh04G017970	CsaV3_5G030690	Cucumber (Chinese Long) v3	cmacucB0886
CmaCh04G017970	CsaV3_2G025120	Cucumber (Chinese Long) v3	cmacucB0823
CmaCh04G017970	Cla97C08G161210	Watermelon (97103) v2	cmawmbB789
CmaCh04G017970	Bhi07G001485	Wax gourd	cmawgoB0891
CmaCh04G017970	Bhi04G000509	Wax gourd	cmawgoB0872
CmaCh04G017970	CsGy5G021330	Cucumber (Gy14) v2	cgybcmaB675
CmaCh04G017970	CsGy2G017490	Cucumber (Gy14) v2	cgybcmaB244
CmaCh04G017970	Carg14295	Silver-seed gourd	carcmaB0339
CmaCh04G017970	Carg21847	Silver-seed gourd	carcmaB0706

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G017970	CmaCh05G000580	Cucurbita maxima (Rimu)	cmacmaB540

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G017970	Silver-seed gourd	carcmaB0884
CmaCh04G017970	Watermelon (97103) v2	cmawmbB759
CmaCh04G017970	Cucurbita maxima (Rimu)	cmacmaB189
CmaCh04G017970	Cucurbita maxima (Rimu)	cmacmaB404
CmaCh04G017970	Cucumber (Gy14) v1	cgycmaB0126
CmaCh04G017970	Cucurbita moschata (Rifu)	cmacmoB680
CmaCh04G017970	Cucurbita moschata (Rifu)	cmacmoB711
CmaCh04G017970	Watermelon (Charleston Gray)	cmawcgB656
CmaCh04G017970	Cucurbita pepo (Zucchini)	cmacpeB694
CmaCh04G017970	Cucurbita pepo (Zucchini)	cmacpeB704
CmaCh04G017970	Cucurbita pepo (Zucchini)	cmacpeB756