Carg14295 (gene) Silver-seed gourd

Overview
NameCarg14295
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionphotosystem II core complex proteins psbY, chloroplastic-like
LocationCucurbita_argyrosperma_scaffold_040 : 172278 .. 172814 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCATCACTCCTTCCCTCAAAGCCCACAACACCCATCTCCCTCCCAATCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGCGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCAGCGCTGAATCAGATCAACCGGATGCGGACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGCTGGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

mRNA sequence

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCATCACTCCTTCCCTCAAAGCCCACAACACCCATCTCCCTCCCAATCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGCGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCAGCGCTGAATCAGATCAACCGGATGCGGACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGCTGGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

Coding sequence (CDS)

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCATCACTCCTTCCCTCAAAGCCCACAACACCCATCTCCCTCCCAATCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGCGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCAGCGCTGAATCAGATCAACCGGATGCGGACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGCTGGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

Protein sequence

MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Homology
[Close]
BLAST of Carg14295 vs. NCBI nr
Match: XP_022956891.1 (photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 327.8 bits (839), Expect = 2.3e-86
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSF 60
           MAATMATMAILNAKCFTPNRTPP LLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSF
Sbjct: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSF 60

Query: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120
           TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 179
           LGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]
BLAST of Carg14295 vs. NCBI nr
Match: XP_023511769.1 (photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.3 bits (830), Expect = 2.5e-85
Identity = 173/178 (97.19%), Postives = 176/178 (98.88%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSF 60
           MAATMATMAILNAKCFTPNRTPP LLPSKPTTP+SLP+PSPKSSLAGSAIAGAIFST SF
Sbjct: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSF 60

Query: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120
           TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 179
           LGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]
BLAST of Carg14295 vs. NCBI nr
Match: XP_022998705.1 (photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 321.6 bits (823), Expect = 1.7e-84
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSF 60
           MAATMATMAILNAKCFTPNRTP  LLPSKPT PISLPIPSPKSSLAGSAIAGAIFSTFSF
Sbjct: 1   MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSF 60

Query: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120
           TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 179
           LGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]
BLAST of Carg14295 vs. NCBI nr
Match: XP_008446112.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 5.3e-75
Identity = 161/179 (89.94%), Postives = 164/179 (91.62%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFS 60
           MAATMATMAILNAKCFTP    P LLPSKPT PISLP P P K SLAG+AIAGAIFST S
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLS 60

Query: 61  FTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGL 120
             DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI GL
Sbjct: 61  SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 179
           GLGGLLASGL+GTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]
BLAST of Carg14295 vs. NCBI nr
Match: XP_004135291.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis sativus] >KGN51717.1 hypothetical protein Csa_5G592810 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 2.3e-70
Identity = 158/181 (87.29%), Postives = 164/181 (90.61%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTP-NRTPPSLLPSKPTT-PISLPIP-SPKSSLAGSAIAGAIFST 60
           MAATMATMAILNAKCFTP N+TP  LLPSKP T PISLP+P   K SLAG+AIAGAIFST
Sbjct: 1   MAATMATMAILNAKCFTPINKTP--LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFST 60

Query: 61  FSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIA 120
            S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 
Sbjct: 61  LSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIV 120

Query: 121 GLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS 179
           GLGLGGLLASGL+GTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRS
Sbjct: 121 GLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS 179

[Close]
BLAST of Carg14295 vs. TAIR10
Match: AT1G67740.1 (photosystem II BY)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 78/191 (40.84%), Postives = 102/191 (53.40%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTPNRTPPSL----LPSKPTTPISLPIPSPKSSLAGSAIAGAIFS 60
           MAA MAT      KC + N +PP L                      ++  +A+AGA+FS
Sbjct: 1   MAAAMATA----TKCMSLNPSPPKLQNQXXXXXXXXXXXXXXXXXXXAVTSTALAGAVFS 60

Query: 61  TFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           + S+++ A A QQIA L    A  DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIAGLGLG------GLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQ 178
           K ++ GLG+G                                       A+LWVLYNILQ
Sbjct: 121 KGIVVGLGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLWVLYNILQ 180

[Close]
BLAST of Carg14295 vs. Swiss-Prot
Match: sp|P80470|PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 9.6e-44
Identity = 119/199 (59.80%), Postives = 135/199 (67.84%), Query Frame = 0 

Query: 1   MAATMA-TMAILNAKCFTPNRTPPSLLPSKPTT-PISL-PIPSPKSSL--------AGSA 60
           MAATMA TMA+LN KC T N    +    KPT+ PISL P+    S L           A
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAIFSTFSFTDAAFAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQ 120
           IAGA+F+T    D AFA QQ+AD+A      DNRGLALLLP+IPA+ WVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INRMRTE-KAVIAGLGLGGLLASG-LLGTPEAMAAE----ASNDARGQLLLIVVAPAILW 179
           IN+MR E KA I GLGL GL  SG LL TPEA AA       +D RG LLL+VV PAI W
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

[Close]
BLAST of Carg14295 vs. Swiss-Prot
Match: sp|O49347|PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-25
Identity = 78/191 (40.84%), Postives = 102/191 (53.40%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTPNRTPPSL----LPSKPTTPISLPIPSPKSSLAGSAIAGAIFS 60
           MAA MAT      KC + N +PP L                      ++  +A+AGA+FS
Sbjct: 1   MAAAMATA----TKCMSLNPSPPKLQNQXXXXXXXXXXXXXXXXXXXAVTSTALAGAVFS 60

Query: 61  TFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           + S+++ A A QQIA L    A  DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIAGLGLG------GLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQ 178
           K ++ GLG+G                                       A+LWVLYNILQ
Sbjct: 121 KGIVVGLGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLWVLYNILQ 180

[Close]
BLAST of Carg14295 vs. TrEMBL
Match: tr|A0A1S3BDT7|A0A1S3BDT7_CUCME (photosystem II core complex proteins psbY, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488936 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 3.5e-75
Identity = 161/179 (89.94%), Postives = 164/179 (91.62%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFS 60
           MAATMATMAILNAKCFTP    P LLPSKPT PISLP P P K SLAG+AIAGAIFST S
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLS 60

Query: 61  FTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGL 120
             DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI GL
Sbjct: 61  SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 179
           GLGGLLASGL+GTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]
BLAST of Carg14295 vs. TrEMBL
Match: tr|A0A0A0KTG2|A0A0A0KTG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G592810 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.5e-70
Identity = 158/181 (87.29%), Postives = 164/181 (90.61%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTP-NRTPPSLLPSKPTT-PISLPIP-SPKSSLAGSAIAGAIFST 60
           MAATMATMAILNAKCFTP N+TP  LLPSKP T PISLP+P   K SLAG+AIAGAIFST
Sbjct: 1   MAATMATMAILNAKCFTPINKTP--LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFST 60

Query: 61  FSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIA 120
            S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 
Sbjct: 61  LSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIV 120

Query: 121 GLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS 179
           GLGLGGLLASGL+GTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRS
Sbjct: 121 GLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS 179

[Close]
BLAST of Carg14295 vs. TrEMBL
Match: tr|V4SU74|V4SU74_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10032789mg PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.0e-55
Identity = 132/200 (66.00%), Postives = 153/200 (76.50%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTPNRTPPSLLP--SKPTTPISL----------PIPSPKSSL-AG 60
           MAA MAT A+LNAKCF+ +    S+ P  +KPT+P+S+            P+  SSL AG
Sbjct: 1   MAAAMATTAVLNAKCFSISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG 60

Query: 61  SAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 120
           +AIAGAIFST S  DAAFAAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQIN
Sbjct: 61  TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120

Query: 121 RMRTEKAVIAGLGLGGLLASGLLGTPE---------AMAAEASNDARGQLLLIVVAPAIL 179
           RMR+ K VI GLGLGGL A+GL+  P          A  AEA++D+RGQLLLIVV PAIL
Sbjct: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180

[Close]
BLAST of Carg14295 vs. TrEMBL
Match: tr|A0A067GTU3|A0A067GTU3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029024mg PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.0e-55
Identity = 132/200 (66.00%), Postives = 153/200 (76.50%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTPNRTPPSLLP--SKPTTPISL----------PIPSPKSSL-AG 60
           MAA MAT A+LNAKCF+ +    S+ P  +KPT+P+S+            P+  SSL AG
Sbjct: 1   MAAAMATTAVLNAKCFSISSPKSSIKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAG 60

Query: 61  SAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 120
           +AIAGAIFST S  DAAFAAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQIN
Sbjct: 61  TAIAGAIFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQIN 120

Query: 121 RMRTEKAVIAGLGLGGLLASGLLGTPE---------AMAAEASNDARGQLLLIVVAPAIL 179
           RMR+ K VI GLGLGGL A+GL+  P          A  AEA++D+RGQLLLIVV PAIL
Sbjct: 121 RMRSTKGVIIGLGLGGLAATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAIL 180

[Close]
BLAST of Carg14295 vs. TrEMBL
Match: tr|A0A067K3B7|A0A067K3B7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17878 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.5e-54
Identity = 132/193 (68.39%), Postives = 149/193 (77.20%), Query Frame = 0 

Query: 1   MAATMATMAILNAKCFTPNRTPPSLLPSK-PTTPIS-LPIPS-------PKSSLAGSAIA 60
           MAATMATMAILNAKC+    +  ++ P+K PT PIS LPI          K  LA SAIA
Sbjct: 1   MAATMATMAILNAKCYLSISSNKNINPTKQPTKPISLLPIQDLPKGLTMSKPVLASSAIA 60

Query: 61  GAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRT 120
           GA FS+ S +D A AAQQIA++AEGDNRGLALLLP+IPA+AWVLFNILQPALNQ+NRM+ 
Sbjct: 61  GAFFSSLSLSDPAMAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQLNRMKE 120

Query: 121 EKAVIAGLGLGGLLASGLLGTPE------AMAAEASNDARGQLLLIVVAPAILWVLYNIL 179
            K VI GLG+GGL ASG + TPE      AM A+A+ND RGQLLL VVAPAILWVLYNIL
Sbjct: 121 TKGVIIGLGIGGLAASGFMITPEASANEFAMIADATNDNRGQLLLFVVAPAILWVLYNIL 180

The following BLAST results are available for this feature:
BLAST of Carg14295 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022956891.12.3e-8698.88photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschat... [more]
XP_023511769.12.5e-8597.19photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo su... [more]
XP_022998705.11.7e-8497.75photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima][more]
XP_008446112.15.3e-7589.94PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi... [more]
XP_004135291.12.3e-7087.29PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi... [more]
BLAST of Carg14295 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67740.11.1e-2640.84photosystem II BY[more]
BLAST of Carg14295 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P80470|PSBY_SPIOL9.6e-4459.80Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX... [more]
sp|O49347|PSBY_ARATH2.0e-2540.84Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana... [more]
BLAST of Carg14295 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BDT7|A0A1S3BDT7_CUCME3.5e-7589.94photosystem II core complex proteins psbY, chloroplastic-like OS=Cucumis melo OX... [more]
tr|A0A0A0KTG2|A0A0A0KTG2_CUCSA1.5e-7087.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G592810 PE=3 SV=1[more]
tr|V4SU74|V4SU74_9ROSI9.0e-5566.00Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10032789mg PE=3 ... [more]
tr|A0A067GTU3|A0A067GTU3_CITSI9.0e-5566.00Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029024mg PE=3 SV=1[more]
tr|A0A067K3B7|A0A067K3B7_JATCU1.5e-5468.39Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17878 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030145manganese ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR038760PsbY_plant
IPR009388PSII_PsbY
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0030145 manganese ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14295-RACarg14295-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009388Photosystem II PsbYPFAMPF06298PsbYcoord: 143..175
e-value: 7.7E-10
score: 38.4
coord: 77..109
e-value: 1.8E-14
score: 53.2
IPR009388Photosystem II PsbYHAMAPMF_00717PSII_PsbYcoord: 77..111
score: 10.827
IPR038760Photosystem II PsbY, plantPANTHERPTHR34790FAMILY NOT NAMEDcoord: 42..178

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg14295Cla010005Watermelon (97103) v1carwmB0232
Carg14295Cla022723Watermelon (97103) v1carwmB0230
Carg14295Csa2G350230Cucumber (Chinese Long) v2carcuB0270
Carg14295Csa5G592810Cucumber (Chinese Long) v2carcuB0271
Carg14295MELO3C011911Melon (DHL92) v3.5.1carmeB0246
Carg14295MELO3C010708Melon (DHL92) v3.5.1carmeB0248
Carg14295ClCG08G017510Watermelon (Charleston Gray)carwcgB0237
Carg14295CSPI02G17520Wild cucumber (PI 183967)carcpiB0274
Carg14295CSPI05G21830Wild cucumber (PI 183967)carcpiB0275
Carg14295Cucsa.394660Cucumber (Gy14) v1carcgyB0289
Carg14295CmaCh05G000580Cucurbita maxima (Rimu)carcmaB0340
Carg14295CmaCh04G017970Cucurbita maxima (Rimu)carcmaB0339
Carg14295CmoCh04G018980Cucurbita moschata (Rifu)carcmoB0343
Carg14295CmoCh05G000640Cucurbita moschata (Rifu)carcmoB0344
Carg14295Lsi04G006360Bottle gourd (USVL1VR-Ls)carlsiB218
Carg14295Lsi08G016260Bottle gourd (USVL1VR-Ls)carlsiB219
Carg14295Cp4.1LG01g15790Cucurbita pepo (Zucchini)carcpeB0344
Carg14295Cp4.1LG09g06280Cucurbita pepo (Zucchini)carcpeB0341
Carg14295CsGy2G017490Cucumber (Gy14) v2carcgybB0257
Carg14295CsGy5G021330Cucumber (Gy14) v2carcgybB0258
Carg14295MELO3C011911.2Melon (DHL92) v3.6.1carmedB0255
Carg14295MELO3C010708.2Melon (DHL92) v3.6.1carmedB0257
Carg14295CsaV3_2G025120Cucumber (Chinese Long) v3carcucB0273
Carg14295Cla97C08G161210Watermelon (97103) v2carwmbB0250
Carg14295Bhi04G000509Wax gourdcarwgoB0307
Carg14295Bhi07G001485Wax gourdcarwgoB0312
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg14295Carg21847Silver-seed gourdcarcarB283
The following block(s) are covering this gene:
GeneOrganismBlock
Carg14295Silver-seed gourdcarcarB284
Carg14295Cucumber (Gy14) v1carcgyB0285
Carg14295Cucurbita maxima (Rimu)carcmaB0336
Carg14295Cucurbita maxima (Rimu)carcmaB0337
Carg14295Cucurbita moschata (Rifu)carcmoB0339
Carg14295Cucurbita moschata (Rifu)carcmoB0342
Carg14295Cucurbita pepo (Zucchini)carcpeB0343
Carg14295Cucurbita pepo (Zucchini)carcpeB0345
Carg14295Cucumber (Chinese Long) v3carcucB0274
Carg14295Watermelon (Charleston Gray)carwcgB0236
Carg14295Watermelon (97103) v2carwmbB0248