Cp4.1LG09g06280 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g06280
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPhotosystem II core complex proteins psbY
LocationCp4.1LG09 : 3869612 .. 3874791 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGTAAACCCGAACAACCGAAAAACGTAAGAACCTGCCTCTAACTTCGCAAGGTCTTTCGGATCCAAGTTACATGCTGTCAAGACATGAAGAACAATAGAAGGATTAGCAGCTAAGGGGAATTCACCCGGACAGGACTCCCCAAAGCAATGGCGTTTCGATAAAGGAAATGTCGACGCTGCTGGATTGGTAACGATACTCGAAACCGATTGATCGGGAATGCTACAGAATTGTATAGGCGCCGTTTCGCTTGTCGTGGCATCCATGGGCACTGCCAAAGGCTCTGCAGTGCCCAAACTTGATAGAAATGGCTGAGATTTCAAGAACACATAGAACAAAGACATCACTAAACATTAGCCGATTCATTGTAAATCAAGAACATGGGAGAAGAATCATTCATTATCTACCTAGATTAATCCGATTGTTCAACAAACTTCCACTCTTAAGTCTACATAAGAACAAACAAAGCAAGCCTGTATAAATTCCTCATAACACAAACAAATGGAGAATCAAAGGCATTCAATGGATTAGTTTGAAAAAAACTCGTTGAATTTAGAGCCAAAGTACCCAACCCAGATCAAAATCACCACTCGATCACTACAATTTGAGCTCGAACAAAGCTAAAAAAACAAACCCAAGTGAAAGAGTAGCAGAATGAACAGCAAGAAACACTAAGAACATGATGAAAATGGATCAAAAGAGGCCAAAATGACCAGAAATGATAGCAATTAGCTTGAATCCTTAACGACCCATAACAGGGTTTACAATTATAACCAAACCCACAACGATCAAACACGATTTTCTCCAAAAAAACAAAAATTTACACAGACCCAGATCAAAAAACTTGCAGAAACTGAAATTTTTTACCCAAAATCCCCAAATTTCTCGATGATCATCATAGATCGATTAGACATTTATTGAGAAAACGAAATTACATAGGAATGGAAACGAAAATCCATGAAAACCCAACTTCATCCACCAAGAATTGCACAGTTTTTTTTGTTTAATTGGATCAGATGCTACTCGAAATGGAAGATGATGATGATGATGATGATGAAGAAGAAGAAGAGGGCGAGGATGATTTAGGAATTGTTCATCTCAAAGGGATTTTTTTAATGATGGTTCTTCCAAATCTATGAGTTTTGGAAGGAGGAGAGATGAGGTGTCTTTTTGATGGTGAATCTGTAAGAGAAAGAACTGAAATTCTCTGTGATTTTCCATTATTTATAGGGATCAGTTTTTTTTACACGTTACCCTTTTGCTTTTGACTGTGTCATAAATTCTTTGTTTTTACTTTTTTACCATAAAAAAAATTGGATTTTTAATTCAAATTCACCGCTTCTTCTCCCTCCCATTTCATTTTTACCCTCTAAAGTTACAGTGAGCTAGTTATTAGGCATAGTTGAGGTAAATTTGATTGGATCCCACATTTTCTTATAAAAAAATTGAGGTAAAAATACTCCATTTTCAAAAGTAACCAGGGTGGAAACTTCTCCCTAGTAGACACGTTTTAATACCATGAGGCTGATGATAGTACGTAATGGGTCAAAACAGACAATATATTGCTAGCAGTGGGTTTTGGCTATTACTAATGGTATCAGAGCGATACCGGACGGTGTACATTAGGTCCCAAAAGGGGTGAGTTGTAAGATCTCACATGAATTGTAGAGGAGAAAGAAATATTATTTATAAGAGTGTGGAAACCTCTCCCTAGTACACACGTTGTCATACCGTGAGGTTGATGGGGATACGTAATGGACCAAAACGGATAATATATTGCTAGCATTGGGCTTTGGCTGTTACTAATGGTATTAGAGCGATACCGAACGGTGCGAGTAAGGACATTAGGCCGCAAAAGGGGTGGATGATGAAATCTAACATCAATGATAGAGGAGAAAGAAATATTATTTATAAGGGTTTAGAAACATTTTAAAATTAGGAGACTCACATAGAGCCTTTCTCGAGTCCCACACGATTCTAATTCCTTTGAAGATTGGAACTTTAAACAACAGATCCAATGGGTTGTCTTAAAAACATGTCATGATTACAGCCATGCAACCACCTGAGCTGAGCTAAGTTGAGGTAAGCATCATCTCTGTCACGTCACTGTTGCTCGAATTATGAGTGTTCTTAAATGCTTAATAGACTCTAAAGCTCTCGTTGGGTTCGTATAAGAGAACGAAACATTATTTAAAAGTGTTTAGAAATCTTGCGTGGAAGCTCAAAAATGACAATATCTACTAGCGGTGGGTTTAGACAGTTACAAATAGTATCAGAGTCAGACACCAAGTGATGTGCTAGCGAAGAGATTGAGCCTCGAAGGGGGGTGGACACGAGACGGTGTGTCAACAACAATGACGCTCTTTACAAGGGTGTGGAAACATCTCCCTAACAGACACATTTTAAACTGTGAAGCTAACAACGATACGTAATGGGCCAAAACGGACAATATCTGCTCGCGGTAAGTTAAGGTTATTATCAATGGAATCAGAGCGAGACACAGGAGATGTGAGTAGAGAAAGAAAGAGGGGACGTTTAAGTACGAGTTGCGCAATAAATGAGATAAACCTTCCTCAAATAACTCTAAAACCTCAAAAATAGCCATGTTCGTGGAATCTTGATCCAAATTGATATGATCCATATATCTTAACCTAATTGAGAAAAATCTTAAAAGGATCATACAAATGACGGGAATGAACTCTTCGTTCTTATAATAGAAGCATTACGAACCGTTTTGATTTTATTAACAATTAAATAAAACAATAAATACGAGAGTAAAAACTCTACCTTTGTAGAATCCATAGCTTGCAAGACTACTCGAAGTATTCCAACAAAACAGAAGTTCTTTCACTTTCACACGATCTTCCTTACCATGACTCAAACAAGCTTGTAGAAGCCTCTTGAAAGAAAATCTCAAAAAGATTAAAGAACGAGAGATTCAAAAGGAAGCGTGAGAGATTAGTGGTCTCCGGCCGTTCTAAACTCTTGTAATCTTTCTCAAATAATATATTTGAATATCTAATATATTAGAATATAATATCTTATTCAAACCAGATTTAAATTTTATTCAAATTTTAAATATATTTTTATTTAATCACTCAGTATCTAATATACAATATAAAATATATCCTTCCAATTAAATATATTTTTATCTATTTATTTAATATATATAATATATTAAATATTAATTGATCAATTAAATTAAACATTTAAGTATTACTATGAGCTAGGAGGGATTATGGAACTACGATGCAAAATTAGTTAATTAAACATTTTAAATAATTAATTTTCATTCATTAACTATATGTACTGTACACTTAAAGTGCAAGCAAGTCAATCGAGTTGTTCATAATTACAGTTGGGTTAAAAGTTCATTTTAATCTGTAATTACATCTTTCACATTAAGTATCATCGATTCTCTAATAAACAATTTATTTATGATTCAATCATAAAAAGTCCCTCTGTACCCGTGAGAGGGTGGGACCCATTGTTCAAGTCCCTCTGTACCCGTGATATTATGTCCACAACTCCCTATCTAGTTAACCTCCCAAAATGGTAGGCATATTGAATCGACTGACAGAGTCATTTTTACTCATAAAAAATAAATAACAAGCCTGATAAGTAGGAGTTCGAAACTCACTCAGTATTAAGATCAAGTTGCATATGATCCCCACATGAAATATTAATTTCTTTAATTAAAGGATTTATAAAAAAAGAAATTAAATATTTCTTGGTCTAGTCTTATACAAATTCATTATATAGATACCCCACTTACATGAACAATTTGAATCAAATCATTTGTAACCGTATCAACAATGTTATCAGAACAAGACACTCAACATTATCCATATATTATAGACCATTTAAGTCATTATTTGAACATAATCGAATTGTAAGTCAACCATATCGTTCAAAATTACATTAATAACCTTGAATTTTCATACAATATATAATATTAAATTATAAATAAAATATTAAAAATTAAATAATTAATCACTGACTTTAGACATAGATCCTAACAATATCTTTAACCTATAGAGAAAGGAACCTCTTCCCGTTGAATCTTTGTTACATAAAATTCTATATTTCAACCTAAGCATCAAAGTTGGTATTACAACCACCCCACTTGGTGTAGAATTCTATTAAAGATCGCATCCCGCGCATATTATATATTATAGTTTGCAACTGATTTAGTTTCCGCTTCTGGGAGATCAAACGAAGCTCGATTAATTTGTGTTAGACAAGAAATAAAGAGCATAACCAATATAGGGAACAAGGGAATACCAGACCATATCTACTTTTGTGCCGTGGCAATCTCACTCAAATTCCGAGAACAGTGGTGGCCATGGCGGTCCTCAACGCCAAATGCTTCACCCCCAACAAAACTTCGATTATCCCCTCAAAACCCACACGACCCATTTCCCTTCCAACCCTTCACACCAAAACTTCCCTCCCCGGAATCGCCGTCGCCGGAGTAATCTTCTCCACACTGAGCTCCACCAACGCTCCCTTCGCCGCCCAGCAAATCGCCAATCTGGAGGAGGGCGATAACCGGGGGCTGGCCCTATTGCTGCCACTCATCCCGACGGTGGCTTGGGTTCTGTTCAACATTCTTCAACAAACGTTGAATCAACTGAACCGGATGCAGACAGAGAAAGCGGTGGTTAGAAGGAACAAGGATAATTTTCTCTTTGTTGGCTAAATGGGACGGATTTGGGATTTATAATCTCCATTTTCTACCAGAGAAAAGTTTCTCCACTCTTATAAGTTAAGTTTCTTTCCCCTCTTCGACCGAGGCAAGATCTTACAATCCACCCCCTTCTTGGGGGTCACCACCTGGTATCTCTGGTAGCATTTGTAAAGCCCAAATTCACTGTCGGTAAATATTGTCCACTTTGACTCATTATGTATCGTCATCAATCTCACAGTTTTTAAATGCGTTTGCTAATGAGAGATTTTCACATCCTTATAAGAAATGTCTCATTTCCCTTTCCAACTGATACCCGATATCACAAAAAGTATGTTACTATCACTACATCGTTCGAGATATGCATTGGATGTCAACAATATTTTAGTTAAATATTGAGAATTATCAAATATTAGTAGTGGAATAATCATAATTAATATCCTACAAACCAACCGTACCCCATTCATTATTTTATTTTTATAAGGTATGA

mRNA sequence

ATGCTGGCGCCGTTTCGCTTGTCGTGGCATCCATGGGCACTGCCAAAGGCTCTGCAGTGCCCAAACTTGATAGAAATGGCTGAGATTTCAAGAACACATAGAACAAAGACATCACTAAACATTAGCCGATTCATTATGCTACTCGAAATGGAAGATGATGATGATGATGATGATGAAGAAGAAGAAGAGGGCGAGGATGATTTAGGAATTACAAGAAATAAAGAGCATAACCAATATAGGGAACAAGGGAATACCAGACCATATCTACTTTTGTGCCGTGGCAATCTCACTCAAATTCCGAGAACAGTGGTGGCCATGGCGGTCCTCAACGCCAAATGCTTCACCCCCAACAAAACTTCGATTATCCCCTCAAAACCCACACGACCCATTTCCCTTCCAACCCTTCACACCAAAACTTCCCTCCCCGGAATCGCCGTCGCCGGAGTAATCTTCTCCACACTGAGCTCCACCAACGCTCCCTTCGCCGCCCAGCAAATCGCCAATCTGGAGGAGGGCGATAACCGGGGGCTGGCCCTATTGCTGCCACTCATCCCGACGGTGGCTTGGGTTCTGTTCAACATTCTTCAACAAACGTTGAATCAACTGAACCGGATGCAGACAGAGAAAGCGGTGGTATGA

Coding sequence (CDS)

ATGCTGGCGCCGTTTCGCTTGTCGTGGCATCCATGGGCACTGCCAAAGGCTCTGCAGTGCCCAAACTTGATAGAAATGGCTGAGATTTCAAGAACACATAGAACAAAGACATCACTAAACATTAGCCGATTCATTATGCTACTCGAAATGGAAGATGATGATGATGATGATGATGAAGAAGAAGAAGAGGGCGAGGATGATTTAGGAATTACAAGAAATAAAGAGCATAACCAATATAGGGAACAAGGGAATACCAGACCATATCTACTTTTGTGCCGTGGCAATCTCACTCAAATTCCGAGAACAGTGGTGGCCATGGCGGTCCTCAACGCCAAATGCTTCACCCCCAACAAAACTTCGATTATCCCCTCAAAACCCACACGACCCATTTCCCTTCCAACCCTTCACACCAAAACTTCCCTCCCCGGAATCGCCGTCGCCGGAGTAATCTTCTCCACACTGAGCTCCACCAACGCTCCCTTCGCCGCCCAGCAAATCGCCAATCTGGAGGAGGGCGATAACCGGGGGCTGGCCCTATTGCTGCCACTCATCCCGACGGTGGCTTGGGTTCTGTTCAACATTCTTCAACAAACGTTGAATCAACTGAACCGGATGCAGACAGAGAAAGCGGTGGTATGA

Protein sequence

MLAPFRLSWHPWALPKALQCPNLIEMAEISRTHRTKTSLNISRFIMLLEMEDDDDDDDEEEEEGEDDLGITRNKEHNQYREQGNTRPYLLLCRGNLTQIPRTVVAMAVLNAKCFTPNKTSIIPSKPTRPISLPTLHTKTSLPGIAVAGVIFSTLSSTNAPFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV
Homology
[Close]
BLAST of Cp4.1LG09g06280 vs. Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 9.6e-19
Identity = 61/120 (50.83%), Postives = 76/120 (63.33%), Query Frame = 1 

Query: 106 MAVLNAKCFT--PNKTSIIPSKPT-RPISLPTLHTKTS---------LPGIAVAGVIFST 165
           MAVLN KC T   NKT+    KPT +PISL  L    S         +   A+AG +F+T
Sbjct: 9   MAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPAIAGAVFAT 68

Query: 166 LSSTNAPFAAQQIANL--EEG--DNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQTEK 210
           L S +  FA QQ+A++  E G  DNRGLALLLP+IP + WVLFNILQ  LNQ+N+M+ EK
Sbjct: 69  LGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEK 128

[Close]
BLAST of Cp4.1LG09g06280 vs. Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-13
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1 

Query: 124 SKPTRPISLPTL---HTKTSLPGIAVAGVIFSTLSSTNAPFAAQQIANLE----EGDNRG 183
           SKP   ISLPT    +   ++   A+AG +FS+LS +    A QQIA L       DNRG
Sbjct: 27  SKPF--ISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRG 86

Query: 184 LALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV 213
           LALLLP++P +AWVL+NILQ  +NQ+N+M+  K +V
Sbjct: 87  LALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIV 120

[Close]
BLAST of Cp4.1LG09g06280 vs. TrEMBL
Match: A0A0A0KTG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G592810 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.8e-33
Identity = 83/114 (72.81%), Postives = 95/114 (83.33%), Query Frame = 1 

Query: 102 TVVAMAVLNAKCFTP-NKTSIIPSKP-TRPISLPT-LHTKTSLPGIAVAGVIFSTLSSTN 161
           T+  MA+LNAKCFTP NKT ++PSKP T+PISLP  + TK SL G A+AG IFSTLSS +
Sbjct: 4   TMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGD 63

Query: 162 APFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV 213
           A  AAQQIA+L EGDNRGLALLLPLIP VAWVLFNILQ  LNQ+NRM+TEKAV+
Sbjct: 64  AALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 117

[Close]
BLAST of Cp4.1LG09g06280 vs. TrEMBL
Match: A0A022Q5Q4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014611mg PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 60/114 (52.63%), Postives = 83/114 (72.81%), Query Frame = 1 

Query: 105 AMAVLNAKCFTPNKTSIIPSKPTRPISL------PTLHTKTSLPGIAVAGVIFSTLSSTN 164
           +MA+LNAKCF  N  + I +KPT+ +SL      PT +   ++ G A+AG IFSTLS+TN
Sbjct: 8   SMAMLNAKCFNTNPKTTISTKPTKQVSLLPTAKTPTTNNNAAVAGTAIAGAIFSTLSTTN 67

Query: 165 APFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV 213
             FA QQ+A + +GDNRG+ALLLPLIP + WVL+NILQ  LNQ+NRM+++  ++
Sbjct: 68  PAFAVQQLAEIADGDNRGIALLLPLIPAILWVLYNILQPALNQINRMRSKGVII 121

[Close]
BLAST of Cp4.1LG09g06280 vs. TrEMBL
Match: M0TAX3_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24
Identity = 66/126 (52.38%), Postives = 86/126 (68.25%), Query Frame = 1 

Query: 102 TVVAMAVLNAKCFTPNKTSIIPSKPTRPISLPTLH---------------TKTSLPGIAV 161
           T+  +A+LNAKC  PN      S PT+P+SL +L                + +SL   A+
Sbjct: 3   TIATVAMLNAKCPAPNHLPSSKSAPTKPVSLLSLQNLPKGVHLSKPINTSSPSSLSAAAI 62

Query: 162 AGVIFSTLSSTNAPFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQ 213
           AG  F++LSS++A FAAQQIA++ EGDNRGLALL+PL+P V WVL+NILQ  LNQLNRM+
Sbjct: 63  AGAFFASLSSSDAAFAAQQIADIAEGDNRGLALLIPLVPAVLWVLYNILQPALNQLNRMR 122

[Close]
BLAST of Cp4.1LG09g06280 vs. TrEMBL
Match: C6TLH3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G172300 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.9e-24
Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = 1 

Query: 102 TVVAMAVLNAKCFTP---NKTSIIPSKPTRPISLPT------LHTKTSLPGIAVAGVIFS 161
           T+ AMA++NAKC  P   N T + PSKP+  I+LP         TK S P  A+AG IF+
Sbjct: 4   TISAMAMINAKCVNPKFPNPTKLAPSKPSLQINLPKGLIASPESTKLS-PATAIAGAIFT 63

Query: 162 TLSSTNAPFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV 213
           TL + +A FA QQIA++ EGDNRGLALLLP+IP + WVLFNILQ  LNQLNRM++ K V+
Sbjct: 64  TLGTCDAAFAVQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVI 122

[Close]
BLAST of Cp4.1LG09g06280 vs. TrEMBL
Match: C6SZ97_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 1 

Query: 102 TVVAMAVLNAKCFTP---NKTSIIPSKPTRPISLPT------LHTKTSLPGIAVAGVIFS 161
           T+ AMA++NAKC  P   N T ++PSKP+  ++LP        +TK S    A+AG IF+
Sbjct: 4   TISAMAMINAKCVNPKFPNPTKLVPSKPSLQVNLPKGLIASPENTKLST-ATAIAGAIFT 63

Query: 162 TLSSTNAPFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV 213
           TL + +A FA QQIA++ EGDNRGLALLLP+IP + WVLFNILQ  LNQLNRM++ K V+
Sbjct: 64  TLGTCDAAFAVQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVI 122

[Close]
BLAST of Cp4.1LG09g06280 vs. TAIR10
Match: AT1G67740.1 (AT1G67740.1 photosystem II BY)

HSP 1 Score: 77.8 bits (190), Expect = 9.0e-15
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1 

Query: 124 SKPTRPISLPTL---HTKTSLPGIAVAGVIFSTLSSTNAPFAAQQIANLE----EGDNRG 183
           SKP   ISLPT    +   ++   A+AG +FS+LS +    A QQIA L       DNRG
Sbjct: 27  SKPF--ISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRG 86

Query: 184 LALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV 213
           LALLLP++P +AWVL+NILQ  +NQ+N+M+  K +V
Sbjct: 87  LALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIV 120

[Close]
BLAST of Cp4.1LG09g06280 vs. NCBI nr
Match: gi|659090621|ref|XP_008446112.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 8.1e-34
Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = 1 

Query: 102 TVVAMAVLNAKCFTP-NKTSII-PSKPTRPISLP-TLHTKTSLPGIAVAGVIFSTLSSTN 161
           T+  MA+LNAKCFTP NKT ++ PSKPT+PISLP  + TK SL G A+AG IFSTLSS +
Sbjct: 4   TMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGD 63

Query: 162 APFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV 213
           A FAAQQIA+L EGDNRGLALLLPLIP VAWVLFNILQ  LNQ+NRM+TEKAV+
Sbjct: 64  AAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 117

[Close]
BLAST of Cp4.1LG09g06280 vs. NCBI nr
Match: gi|449435015|ref|XP_004135291.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 6.9e-33
Identity = 83/114 (72.81%), Postives = 95/114 (83.33%), Query Frame = 1 

Query: 102 TVVAMAVLNAKCFTP-NKTSIIPSKP-TRPISLPT-LHTKTSLPGIAVAGVIFSTLSSTN 161
           T+  MA+LNAKCFTP NKT ++PSKP T+PISLP  + TK SL G A+AG IFSTLSS +
Sbjct: 4   TMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGD 63

Query: 162 APFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV 213
           A  AAQQIA+L EGDNRGLALLLPLIP VAWVLFNILQ  LNQ+NRM+TEKAV+
Sbjct: 64  AALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 117

[Close]
BLAST of Cp4.1LG09g06280 vs. NCBI nr
Match: gi|848915013|ref|XP_012855331.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Erythranthe guttata])

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 60/114 (52.63%), Postives = 83/114 (72.81%), Query Frame = 1 

Query: 105 AMAVLNAKCFTPNKTSIIPSKPTRPISL------PTLHTKTSLPGIAVAGVIFSTLSSTN 164
           +MA+LNAKCF  N  + I +KPT+ +SL      PT +   ++ G A+AG IFSTLS+TN
Sbjct: 8   SMAMLNAKCFNTNPKTTISTKPTKQVSLLPTAKTPTTNNNAAVAGTAIAGAIFSTLSTTN 67

Query: 165 APFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV 213
             FA QQ+A + +GDNRG+ALLLPLIP + WVL+NILQ  LNQ+NRM+++  ++
Sbjct: 68  PAFAVQQLAEIADGDNRGIALLLPLIPAILWVLYNILQPALNQINRMRSKGVII 121

[Close]
BLAST of Cp4.1LG09g06280 vs. NCBI nr
Match: gi|695037778|ref|XP_009406386.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 119.8 bits (299), Expect = 5.8e-24
Identity = 66/126 (52.38%), Postives = 86/126 (68.25%), Query Frame = 1 

Query: 102 TVVAMAVLNAKCFTPNKTSIIPSKPTRPISLPTLH---------------TKTSLPGIAV 161
           T+  +A+LNAKC  PN      S PT+P+SL +L                + +SL   A+
Sbjct: 3   TIATVAMLNAKCPAPNHLPSSKSAPTKPVSLLSLQNLPKGVHLSKPINTSSPSSLSAAAI 62

Query: 162 AGVIFSTLSSTNAPFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQ 213
           AG  F++LSS++A FAAQQIA++ EGDNRGLALL+PL+P V WVL+NILQ  LNQLNRM+
Sbjct: 63  AGAFFASLSSSDAAFAAQQIADIAEGDNRGLALLIPLVPAVLWVLYNILQPALNQLNRMR 122

[Close]
BLAST of Cp4.1LG09g06280 vs. NCBI nr
Match: gi|359806150|ref|NP_001240940.1| (uncharacterized protein LOC100779397 [Glycine max])

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = 1 

Query: 102 TVVAMAVLNAKCFTP---NKTSIIPSKPTRPISLPT------LHTKTSLPGIAVAGVIFS 161
           T+ AMA++NAKC  P   N T + PSKP+  I+LP         TK S P  A+AG IF+
Sbjct: 4   TISAMAMINAKCVNPKFPNPTKLAPSKPSLQINLPKGLIASPESTKLS-PATAIAGAIFT 63

Query: 162 TLSSTNAPFAAQQIANLEEGDNRGLALLLPLIPTVAWVLFNILQQTLNQLNRMQTEKAVV 213
           TL + +A FA QQIA++ EGDNRGLALLLP+IP + WVLFNILQ  LNQLNRM++ K V+
Sbjct: 64  TLGTCDAAFAVQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVI 122

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g06280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBY_SPIOL9.6e-1950.83Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN... [more]
PSBY_ARATH1.6e-1347.92Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana... [more]
BLAST of Cp4.1LG09g06280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTG2_CUCSA4.8e-3372.81Uncharacterized protein OS=Cucumis sativus GN=Csa_5G592810 PE=3 SV=1[more]
A0A022Q5Q4_ERYGU1.1e-2452.63Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014611mg PE=3 SV=1[more]
M0TAX3_MUSAM4.1e-2452.38Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1[more]
C6TLH3_SOYBN6.9e-2455.83Uncharacterized protein OS=Glycine max GN=GLYMA_05G172300 PE=2 SV=1[more]
C6SZ97_SOYBN1.2e-2354.17Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of Cp4.1LG09g06280 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67740.19.0e-1547.92 photosystem II BY[more]
BLAST of Cp4.1LG09g06280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090621|ref|XP_008446112.1|8.1e-3473.68PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi... [more]
gi|449435015|ref|XP_004135291.1|6.9e-3372.81PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi... [more]
gi|848915013|ref|XP_012855331.1|1.5e-2452.63PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Erythranthe... [more]
gi|695037778|ref|XP_009406386.1|5.8e-2452.38PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Musa a... [more]
gi|359806150|ref|NP_001240940.1|1.0e-2355.83uncharacterized protein LOC100779397 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030145manganese ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR009388PSII_PsbY
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009657 plastid organization
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006364 rRNA processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0030145 manganese ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g06280.1Cp4.1LG09g06280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009388Photosystem II PsbYHAMAPMF_00717PSII_PsbYcoord: 173..207
score: 9
IPR009388Photosystem II PsbYPFAMPF06298PsbYcoord: 173..205
score: 1.1
NoneNo IPR availablePANTHERPTHR34790FAMILY NOT NAMEDcoord: 139..212
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g06280CmaCh05G000580Cucurbita maxima (Rimu)cmacpeB764
Cp4.1LG09g06280Cla022723Watermelon (97103) v1cpewmB022
Cp4.1LG09g06280Cla010005Watermelon (97103) v1cpewmB028
Cp4.1LG09g06280Csa5G592810Cucumber (Chinese Long) v2cpecuB047
Cp4.1LG09g06280MELO3C011911Melon (DHL92) v3.5.1cpemeB021
Cp4.1LG09g06280MELO3C010708Melon (DHL92) v3.5.1cpemeB037
Cp4.1LG09g06280CSPI05G21830Wild cucumber (PI 183967)cpecpiB042
Cp4.1LG09g06280Lsi04G006360Bottle gourd (USVL1VR-Ls)cpelsiB030
Cp4.1LG09g06280Lsi08G016260Bottle gourd (USVL1VR-Ls)cpelsiB045
Cp4.1LG09g06280MELO3C010708.2Melon (DHL92) v3.6.1cpemedB043
Cp4.1LG09g06280MELO3C011911.2Melon (DHL92) v3.6.1cpemedB025
Cp4.1LG09g06280CsaV3_2G025120Cucumber (Chinese Long) v3cpecucB0035
Cp4.1LG09g06280CsaV3_5G030690Cucumber (Chinese Long) v3cpecucB0051
Cp4.1LG09g06280Bhi07G001485Wax gourdcpewgoB0054
Cp4.1LG09g06280Bhi04G000509Wax gourdcpewgoB0032
Cp4.1LG09g06280CsGy5G021330Cucumber (Gy14) v2cgybcpeB588
Cp4.1LG09g06280CsGy2G017490Cucumber (Gy14) v2cgybcpeB154
Cp4.1LG09g06280Carg14295Silver-seed gourdcarcpeB0341
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g06280Cp4.1LG01g15790Cucurbita pepo (Zucchini)cpecpeB033
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g06280Cucurbita pepo (Zucchini)cpecpeB020
Cp4.1LG09g06280Cucumber (Gy14) v1cgycpeB0120
Cp4.1LG09g06280Cucumber (Gy14) v1cgycpeB1037
Cp4.1LG09g06280Cucurbita maxima (Rimu)cmacpeB167
Cp4.1LG09g06280Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g06280Cucurbita maxima (Rimu)cmacpeB694
Cp4.1LG09g06280Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g06280Cucurbita moschata (Rifu)cmocpeB646
Cp4.1LG09g06280Cucurbita moschata (Rifu)cmocpeB718
Cp4.1LG09g06280Wild cucumber (PI 183967)cpecpiB030
Cp4.1LG09g06280Cucumber (Chinese Long) v2cpecuB034
Cp4.1LG09g06280Watermelon (Charleston Gray)cpewcgB041
Cp4.1LG09g06280Watermelon (Charleston Gray)cpewcgB054
Cp4.1LG09g06280Silver-seed gourdcarcpeB1490
Cp4.1LG09g06280Silver-seed gourdcarcpeB0886