Carg21847 (gene) Silver-seed gourd

Overview
NameCarg21847
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionphotosystem II core complex proteins psbY, chloroplastic
LocationCucurbita_argyrosperma_scaffold_192 : 239764 .. 240372 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTACCATGGCAACAATGGCAGTGCTGAGTGTCAAGTGCACAAGCATCAACTCCACCAGAAACCACAACACCCCAAAGCTGATCCCCAAGCCCATCTCCCTTCTCTCTCTTCAGAACCTGCCGAAAGGACTGATCTCATCAAAATCCAATGGACATTCCAACTTATCAACCTTTCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTCTCAGCCCTGAGCTCATCAGATCCTGCCTTCGCAGCCCAACAAATTGCAGATATAGCAGCCGACGGTGACAACCGTGGAATAGCCCTTTTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATAAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTTATGTACGCACCTGATGCCTCTGCCAGTGAGCTCGCCATGATTGCCGATGCATCCTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAACTCCCGCCATTCTTTGGGTGCTGTACAACATTCTTCAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

mRNA sequence

ATGGCAGCTACCATGGCAACAATGGCAGTGCTGAGTGTCAAGTGCACAAGCATCAACTCCACCAGAAACCACAACACCCCAAAGCTGATCCCCAAGCCCATCTCCCTTCTCTCTCTTCAGAACCTGCCGAAAGGACTGATCTCATCAAAATCCAATGGACATTCCAACTTATCAACCTTTCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTCTCAGCCCTGAGCTCATCAGATCCTGCCTTCGCAGCCCAACAAATTGCAGATATAGCAGCCGACGGTGACAACCGTGGAATAGCCCTTTTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATAAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTTATGTACGCACCTGATGCCTCTGCCAGTGAGCTCGCCATGATTGCCGATGCATCCTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAACTCCCGCCATTCTTTGGGTGCTGTACAACATTCTTCAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

Coding sequence (CDS)

ATGGCAGCTACCATGGCAACAATGGCAGTGCTGAGTGTCAAGTGCACAAGCATCAACTCCACCAGAAACCACAACACCCCAAAGCTGATCCCCAAGCCCATCTCCCTTCTCTCTCTTCAGAACCTGCCGAAAGGACTGATCTCATCAAAATCCAATGGACATTCCAACTTATCAACCTTTCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTCTCAGCCCTGAGCTCATCAGATCCTGCCTTCGCAGCCCAACAAATTGCAGATATAGCAGCCGACGGTGACAACCGTGGAATAGCCCTTTTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATAAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTTATGTACGCACCTGATGCCTCTGCCAGTGAGCTCGCCATGATTGCCGATGCATCCTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAACTCCCGCCATTCTTTGGGTGCTGTACAACATTCTTCAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

Protein sequence

MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRMRSE
Homology
[Close]
BLAST of Carg21847 vs. NCBI nr
Match: XP_004142959.2 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 2.9e-93
Identity = 188/202 (93.07%), Postives = 196/202 (97.03%), Query Frame = 0 

Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+ L SSDPAFAAQQIA+IAADGDNRG+ALLLPLIPA+AWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]
BLAST of Carg21847 vs. NCBI nr
Match: KGN62340.1 (hypothetical protein Csa_2G350230 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 175/189 (92.59%), Postives = 183/189 (96.83%), Query Frame = 0 

Query: 14  KCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSA 73
           KCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVF+ 
Sbjct: 65  KCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFAT 124

Query: 74  LSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVI 133
           L SSDPAFAAQQIA+IAADGDNRG+ALLLPLIPA+AWVLFNILQPALNQINRMRSDKGVI
Sbjct: 125 LGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVI 184

Query: 134 IGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPAL 193
           IGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPAL
Sbjct: 185 IGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL 244

Query: 194 NQLNRMRSE 203
           NQLNRMRSE
Sbjct: 245 NQLNRMRSE 253

[Close]
BLAST of Carg21847 vs. NCBI nr
Match: XP_022131700.1 (photosystem II core complex proteins psbY, chloroplastic [Momordica charantia])

HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 179/202 (88.61%), Postives = 192/202 (95.05%), Query Frame = 0 

Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAATMATMAVLSVKCTSINS++NH TPK I  PISLLSLQNLPK LISSK++ + NLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFSA SSSDPAFAAQQIA+IAA+GDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQINRMRSDKGVIIGLGLGGL AS FMYAPDASA+E+AMIADASSSD+RGQLLLFV++PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]
BLAST of Carg21847 vs. NCBI nr
Match: XP_008444395.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 4.6e-83
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0 

Query: 20  STRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDP 79
           ST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVF+ L +SDP
Sbjct: 71  STKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDP 130

Query: 80  AFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLG 139
           AFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLG
Sbjct: 131 AFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLG 190

Query: 140 GLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRM 199
           GLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRM
Sbjct: 191 GLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRM 250

Query: 200 RSE 203
           RS+
Sbjct: 251 RSK 253

[Close]
BLAST of Carg21847 vs. NCBI nr
Match: XP_002285325.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Vitis vinifera])

HSP 1 Score: 288.9 bits (738), Expect = 1.3e-74
Identity = 158/202 (78.22%), Postives = 177/202 (87.62%), Query Frame = 0 

Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAAT+ATMA+L+ KC SINS +N N  K   KPISLLS+QNLPKGL + KS+ + NLST 
Sbjct: 1   MAATIATMAMLNAKCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTS 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           L+ TAIAGA+FS LSS DPA AAQQIA+I ADGDNRG+ALLLP+IPAIAWVLFNILQPAL
Sbjct: 61  LAGTAIAGAIFSTLSSCDPALAAQQIAEI-ADGDNRGLALLLPIIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQ+N+MRS KGVIIGLGLGGL ASGFM  P ASASE+A +ADA+SSD+RGQLLLFVVTPA
Sbjct: 121 NQLNKMRSTKGVIIGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 201

[Close]
BLAST of Carg21847 vs. TAIR10
Match: AT1G67740.1 (photosystem II BY)

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-29
Identity = 87/204 (42.65%), Postives = 110/204 (53.92%), Query Frame = 0 

Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAA MAT    + KC S+N           P P  L + Q                    
Sbjct: 1   MAAAMAT----ATKCMSLN-----------PSPPKLQN-QXXXXXXXXXXXXXXXXXXXA 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIA---ADGDNRGIALLLPLIPAIAWVLFNILQ 120
           ++STA+AGAVFS+LS S+PA A QQIA +A   A  DNRG+ALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 121 PALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVV 180
           PA+NQ+N+MR  KG+++GLG+ G                                     
Sbjct: 121 PAINQVNKMRESKGIVVGLGI-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 TPAILWVLYNILQPALNQLNRMRS 202
             A+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 XXALLWVLYNILQPALNQINKMRS 187

[Close]
BLAST of Carg21847 vs. Swiss-Prot
Match: sp|P80470|PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-47
Identity = 123/209 (58.85%), Postives = 151/209 (72.25%), Query Frame = 0 

Query: 1   MAATMA-TMAVLSVKCTSINSTRNHNT-PKLIPKPISLLSLQNLPKGLISSKSNGHSNLS 60
           MAATMA TMAVL+ KC ++N+ +  +T PK   KPISL      P GL +SK      LS
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISL-----SPLGLSNSKL--PMGLS 60

Query: 61  TFLSSTAIAGAVFSALSSSDPAFAAQQIADIAAD---GDNRGIALLLPLIPAIAWVLFNI 120
             +++ AIAGAVF+ L S DPAFA QQ+ADIAA+    DNRG+ALLLP+IPA+ WVLFNI
Sbjct: 61  PIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120

Query: 121 LQPALNQINRMRSD-KGVIIGLGLGGLTASGFMYA-PDASASELAMIADASSSDSRGQLL 180
           LQPALNQIN+MR++ K  I+GLGL GL  SG + A P+A A+   +   A  SD+RG LL
Sbjct: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEI---ARGSDNRGTLL 180

Query: 181 LFVVTPAILWVLYNILQPALNQLNRMRSE 203
           L VV PAI WVL+NILQPALNQLN+MRS+
Sbjct: 181 LLVVLPAIGWVLFNILQPALNQLNKMRSQ 199

[Close]
BLAST of Carg21847 vs. Swiss-Prot
Match: sp|O49347|PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.4e-28
Identity = 87/204 (42.65%), Postives = 110/204 (53.92%), Query Frame = 0 

Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAA MAT    + KC S+N           P P  L + Q                    
Sbjct: 1   MAAAMAT----ATKCMSLN-----------PSPPKLQN-QXXXXXXXXXXXXXXXXXXXA 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIA---ADGDNRGIALLLPLIPAIAWVLFNILQ 120
           ++STA+AGAVFS+LS S+PA A QQIA +A   A  DNRG+ALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 121 PALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVV 180
           PA+NQ+N+MR  KG+++GLG+ G                                     
Sbjct: 121 PAINQVNKMRESKGIVVGLGI-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 TPAILWVLYNILQPALNQLNRMRS 202
             A+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 XXALLWVLYNILQPALNQINKMRS 187

[Close]
BLAST of Carg21847 vs. TrEMBL
Match: tr|A0A0A0LKA1|A0A0A0LKA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.2e-87
Identity = 175/189 (92.59%), Postives = 183/189 (96.83%), Query Frame = 0 

Query: 14  KCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSA 73
           KCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVF+ 
Sbjct: 65  KCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFAT 124

Query: 74  LSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVI 133
           L SSDPAFAAQQIA+IAADGDNRG+ALLLPLIPA+AWVLFNILQPALNQINRMRSDKGVI
Sbjct: 125 LGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVI 184

Query: 134 IGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPAL 193
           IGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPAL
Sbjct: 185 IGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL 244

Query: 194 NQLNRMRSE 203
           NQLNRMRSE
Sbjct: 245 NQLNRMRSE 253

[Close]
BLAST of Carg21847 vs. TrEMBL
Match: tr|A0A1S3B9R1|A0A1S3B9R1_CUCME (photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487736 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 3.1e-83
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0 

Query: 20  STRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTFLSSTAIAGAVFSALSSSDP 79
           ST+ HNT K+IPKPISLLSLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVF+ L +SDP
Sbjct: 71  STKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDP 130

Query: 80  AFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLG 139
           AFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLG
Sbjct: 131 AFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLG 190

Query: 140 GLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPAILWVLYNILQPALNQLNRM 199
           GLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRM
Sbjct: 191 GLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRM 250

Query: 200 RSE 203
           RS+
Sbjct: 251 RSK 253

[Close]
BLAST of Carg21847 vs. TrEMBL
Match: tr|F6GVJ9|F6GVJ9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 8.9e-75
Identity = 158/202 (78.22%), Postives = 177/202 (87.62%), Query Frame = 0 

Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAAT+ATMA+L+ KC SINS +N N  K   KPISLLS+QNLPKGL + KS+ + NLST 
Sbjct: 1   MAATIATMAMLNAKCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTS 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           L+ TAIAGA+FS LSS DPA AAQQIA+I ADGDNRG+ALLLP+IPAIAWVLFNILQPAL
Sbjct: 61  LAGTAIAGAIFSTLSSCDPALAAQQIAEI-ADGDNRGLALLLPIIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQ+N+MRS KGVIIGLGLGGL ASGFM  P ASASE+A +ADA+SSD+RGQLLLFVVTPA
Sbjct: 121 NQLNKMRSTKGVIIGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 201

[Close]
BLAST of Carg21847 vs. TrEMBL
Match: tr|A0A1U8KGA8|A0A1U8KGA8_GOSHI (photosystem II core complex proteins psbY, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107916725 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 3.5e-71
Identity = 150/202 (74.26%), Postives = 174/202 (86.14%), Query Frame = 0 

Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAA++ATMA+L+ KC SI+ST+  +  K  PKP SLLS+QNLPKGL  SK   +SNL + 
Sbjct: 1   MAASVATMAMLNAKCLSISSTKMSSPTKPTPKPFSLLSMQNLPKGLTISKPANNSNLPSS 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           L+ +AIAGA+FS LSS DPA AAQQIA+I A+GDNRG+ALLLP+IPAIAWVLFNILQPAL
Sbjct: 61  LAGSAIAGAIFSTLSSCDPALAAQQIAEI-AEGDNRGLALLLPIIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQ+NRMRS KGVIIGLGLGGL ASGFM  P+ASASE+AM+ADASSSD+RG LLLFVV PA
Sbjct: 121 NQLNRMRSSKGVIIGLGLGGLAASGFMSTPEASASEIAMVADASSSDNRGTLLLFVVAPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           +LWV YNILQPALNQLNRMRS+
Sbjct: 181 LLWVAYNILQPALNQLNRMRSQ 201

[Close]
BLAST of Carg21847 vs. TrEMBL
Match: tr|A0A1R3IG27|A0A1R3IG27_9ROSI (Photosystem II PsbY OS=Corchorus olitorius OX=93759 GN=COLO4_23543 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 6.0e-71
Identity = 153/202 (75.74%), Postives = 172/202 (85.15%), Query Frame = 0 

Query: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60
           MAA++ATMA+L+ KC SINST+  N  K   KPISLLS+QNLPKGL  SK   +S L + 
Sbjct: 1   MAASVATMAMLNAKCLSINSTKMMNPSKPTSKPISLLSIQNLPKGLTISKPADNSILPSA 60

Query: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120
           L+ TAIAGA FS LS+ DPAFAAQQIADIAADGDNRG+ALLLP+IPAI WVLFNILQPAL
Sbjct: 61  LTGTAIAGAFFSTLSACDPAFAAQQIADIAADGDNRGLALLLPIIPAIGWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180
           NQ+NRMRS KGVIIGLGLGGL ASGF+  PDASASE+AMIA+A +SD+RG LLLFVV PA
Sbjct: 121 NQLNRMRSTKGVIIGLGLGGLAASGFVSTPDASASEIAMIAEA-ASDNRGTLLLFVVAPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSE 203
           +LWV YNILQPALNQLNRMRSE
Sbjct: 181 LLWVAYNILQPALNQLNRMRSE 201

The following BLAST results are available for this feature:
BLAST of Carg21847 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142959.22.9e-9393.07PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis sat... [more]
KGN62340.11.8e-8792.59hypothetical protein Csa_2G350230 [Cucumis sativus][more]
XP_022131700.11.8e-8788.61photosystem II core complex proteins psbY, chloroplastic [Momordica charantia][more]
XP_008444395.14.6e-8391.80PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis mel... [more]
XP_002285325.11.3e-7478.22PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Vitis vinif... [more]
BLAST of Carg21847 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67740.13.6e-2942.65photosystem II BY[more]
BLAST of Carg21847 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P80470|PSBY_SPIOL1.2e-4758.85Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX... [more]
sp|O49347|PSBY_ARATH6.4e-2842.65Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana... [more]
BLAST of Carg21847 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKA1|A0A0A0LKA1_CUCSA1.2e-8792.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1[more]
tr|A0A1S3B9R1|A0A1S3B9R1_CUCME3.1e-8391.80photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656... [more]
tr|F6GVJ9|F6GVJ9_VITVI8.9e-7578.22Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=... [more]
tr|A0A1U8KGA8|A0A1U8KGA8_GOSHI3.5e-7174.26photosystem II core complex proteins psbY, chloroplastic-like OS=Gossypium hirsu... [more]
tr|A0A1R3IG27|A0A1R3IG27_9ROSI6.0e-7175.74Photosystem II PsbY OS=Corchorus olitorius OX=93759 GN=COLO4_23543 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030145manganese ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR038760PsbY_plant
IPR009388PSII_PsbY
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0030145 manganese ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21847-RACarg21847-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009388Photosystem II PsbYPFAMPF06298PsbYcoord: 94..126
e-value: 9.0E-14
score: 51.0
coord: 167..199
e-value: 2.5E-10
score: 40.0
IPR009388Photosystem II PsbYHAMAPMF_00717PSII_PsbYcoord: 94..128
score: 10.886
IPR038760Photosystem II PsbY, plantPANTHERPTHR34790FAMILY NOT NAMEDcoord: 3..202

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg21847Cla022723Watermelon (97103) v1carwmB0500
Carg21847Cla010005Watermelon (97103) v1carwmB0501
Carg21847Csa2G350230Cucumber (Chinese Long) v2carcuB0529
Carg21847Csa5G592810Cucumber (Chinese Long) v2carcuB0530
Carg21847MELO3C010708Melon (DHL92) v3.5.1carmeB0506
Carg21847MELO3C011911Melon (DHL92) v3.5.1carmeB0505
Carg21847ClCG08G017510Watermelon (Charleston Gray)carwcgB0490
Carg21847CSPI02G17520Wild cucumber (PI 183967)carcpiB0537
Carg21847CSPI05G21830Wild cucumber (PI 183967)carcpiB0538
Carg21847Cucsa.394660Cucumber (Gy14) v1carcgyB0576
Carg21847CmaCh05G000580Cucurbita maxima (Rimu)carcmaB0707
Carg21847CmaCh04G017970Cucurbita maxima (Rimu)carcmaB0706
Carg21847CmoCh05G000640Cucurbita moschata (Rifu)carcmoB0686
Carg21847CmoCh04G018980Cucurbita moschata (Rifu)carcmoB0685
Carg21847Lsi04G006360Bottle gourd (USVL1VR-Ls)carlsiB453
Carg21847Lsi08G016260Bottle gourd (USVL1VR-Ls)carlsiB454
Carg21847Cp4.1LG01g15790Cucurbita pepo (Zucchini)carcpeB0710
Carg21847CsGy5G021330Cucumber (Gy14) v2carcgybB0507
Carg21847CsGy2G017490Cucumber (Gy14) v2carcgybB0506
Carg21847MELO3C011911.2Melon (DHL92) v3.6.1carmedB0510
Carg21847MELO3C010708.2Melon (DHL92) v3.6.1carmedB0511
Carg21847CsaV3_2G025120Cucumber (Chinese Long) v3carcucB0535
Carg21847CsaV3_5G030690Cucumber (Chinese Long) v3carcucB0536
Carg21847Cla97C08G161210Watermelon (97103) v2carwmbB0528
Carg21847Bhi04G000509Wax gourdcarwgoB0612
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg21847Carg14295Silver-seed gourdcarcarB283
The following block(s) are covering this gene:
GeneOrganismBlock
Carg21847Silver-seed gourdcarcarB488
Carg21847Cucurbita maxima (Rimu)carcmaB0704
Carg21847Cucurbita maxima (Rimu)carcmaB0705
Carg21847Cucurbita moschata (Rifu)carcmoB0684
Carg21847Cucurbita pepo (Zucchini)carcpeB0709
Carg21847Cucurbita pepo (Zucchini)carcpeB0711
Carg21847Watermelon (Charleston Gray)carwcgB0489