CSPI05G21830.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G21830.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Photosystem II core complex proteins psbY
Location	Chr5 : 22448512 .. 22449656 (-)
Sequence length	540

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTTATACTAGTTAGTATTTTTTATTTTAATTATCCCAAAACACATTAGTGAGAAATGAAGATTAAGTTAAATGTTACGTCAAAAGTGTTTGTTATATGGTGAATGAAAATTAGAATTAGAAGAAGATAATATGGATGAGAAAGGAATAGTGATGGCAACAAAATTTTGAGGCTCAAAATTTCCCAATCCCACCGTTTTAGATAAGAATACAATCCATTCTCTCAATTCCATTGGCTCTCATTTCCCCAAAATCCTCTCTCAAATTTCCCAAAAACGCTCTTCACATCCCTAATTCCTATTCCCTACACACCAATTTCTTCACTCTCCTTCAATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCCTCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGAAATGGTGATTAGATGATCCTTAAATTACTTGTAATTTTAAATGCAAATCTCTCTCTCTTATGCTTTATAAATGAAGCGTTGGAGTCTAAGCCCAAACTTGATTTCTTTTTGGGGTCTTTTTTAGTGTTTATAATCAATATTCACCAACCTCAACTTCCAATATACTTTCATTATTCTTATTAATACTTTTAGATACCACTTTCGTCCAGTTCTATGCTTATTTTCGTTCATTTTTATTACTTTCATCTGTTAATTTATGCATTTACTAGTTG

mRNA sequence

ATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCCTCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGA

Coding sequence (CDS)

ATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCCTCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGA

Homology

[Close]

BLAST of CSPI05G21830.1 vs. Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 196.4 bits (498), Expect = 2.6e-49
Identity = 125/199 (62.81%), Postives = 140/199 (70.35%), Query Frame = 1


Query: 1   MAATMAT-MAILNAKCFT-PINKTPLLPSKPATKPISLP--------LPILTKPSLAGTA 60
           MAATMAT MA+LN KC T   NKT     KP +KPISL         LP+   P +   A
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAIFSTLSSGDAALAAQQIADLAE----GDNRGLALLLPLIPAVAWVLFNILQPALNQ 120
           IAGA+F+TL S D A A QQ+AD+A      DNRGLALLLP+IPA+ WVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INRMRTE-KAVIVGLGLGGLLASG-LVGTPEAMAAE----AGSDGRGQLLLIVVAPAIAW 180
           IN+MR E KA IVGLGL GL  SG L+ TPEA AA      GSD RG LLL+VV PAI W
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

[Close]

BLAST of CSPI05G21830.1 vs. Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-43
Identity = 111/191 (58.12%), Postives = 134/191 (70.16%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFS 60
           MAA MAT      KC +     P L ++  +KP ISLP P     SLA   TA+AGA+FS
Sbjct: 1   MAAAMATAT----KCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TLSSGDAALAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           +LS  + ALA QQIA LA      DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQ 179
           K ++VGLG+ GGL ASGL+  P      A AA A SD RGQLLLIVV PA+ WVL+NILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

[Close]

BLAST of CSPI05G21830.1 vs. TrEMBL
Match: A0A0A0KTG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G592810 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 4.4e-88
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60
           MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS
Sbjct: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60

Query: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120
           SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL
Sbjct: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 179

[Close]

BLAST of CSPI05G21830.1 vs. TrEMBL
Match: B9HTF3_POPTR (Photosystem II core complex proteins psbY OS=Populus trichocarpa GN=POPTR_0010s06190g PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.3e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P+KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSNKNISPTKPSTKPVSLLSMQNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRGLALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP       AM A+A SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPHASASEIAMIADATSDNRGTLLLIVVAPAILWVLY 180

[Close]

BLAST of CSPI05G21830.1 vs. TrEMBL
Match: A9PIV1_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.3e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSIKNISPPKPSTKPVSLLSMLNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRG+ALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP+      AM AEA SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPDASASEIAMIAEAASDNRGTLLLIVVAPAILWVLY 180

[Close]

BLAST of CSPI05G21830.1 vs. TrEMBL
Match: A9PJ80_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.3e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P+KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSNKNISPTKPSTKPVSLLSMQNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRGLALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP       AM A+A SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPHASASEIAMIADATSDNRGTLLLIVVAPAILWVLY 180

[Close]

BLAST of CSPI05G21830.1 vs. TrEMBL
Match: A9PJJ8_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.0e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSIKNISPPKPSTKPVSLLSMLNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRG+ALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP+      AM AEA SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPDASASEIAMIAEATSDNRGTLLLIVVAPAILWVLY 180

[Close]

BLAST of CSPI05G21830.1 vs. TAIR10
Match: AT1G67740.1 (AT1G67740.1 photosystem II BY)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-44
Identity = 111/191 (58.12%), Postives = 134/191 (70.16%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFS 60
           MAA MAT      KC +     P L ++  +KP ISLP P     SLA   TA+AGA+FS
Sbjct: 1   MAAAMATAT----KCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TLSSGDAALAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           +LS  + ALA QQIA LA      DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQ 179
           K ++VGLG+ GGL ASGL+  P      A AA A SD RGQLLLIVV PA+ WVL+NILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

[Close]

BLAST of CSPI05G21830.1 vs. NCBI nr
Match: gi|449435015|ref|XP_004135291.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 6.4e-88
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60
           MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS
Sbjct: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60

Query: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120
           SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL
Sbjct: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 179

[Close]

BLAST of CSPI05G21830.1 vs. NCBI nr
Match: gi|659090621|ref|XP_008446112.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 7.5e-81
Identity = 171/180 (95.00%), Postives = 173/180 (96.11%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTL 60
           MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTL
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTL 60

Query: 61  SSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120
           SSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG
Sbjct: 61  SSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120

Query: 121 LGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           LGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Sbjct: 121 LGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]

BLAST of CSPI05G21830.1 vs. NCBI nr
Match: gi|224110818|ref|XP_002315645.1| (Photosystem II core complex proteins psbY [Populus trichocarpa])

HSP 1 Score: 228.8 bits (582), Expect = 7.6e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P+KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSNKNISPTKPSTKPVSLLSMQNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRGLALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP       AM A+A SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPHASASEIAMIADATSDNRGTLLLIVVAPAILWVLY 180

[Close]

BLAST of CSPI05G21830.1 vs. NCBI nr
Match: gi|118488993|gb|ABK96304.1| (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 228.8 bits (582), Expect = 7.6e-57
Identity = 134/196 (68.37%), Postives = 154/196 (78.57%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSIKNISPPKPSTKPVSLLSMLNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRG+ALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP+      AM AEA SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPDASASEIAMIAEAASDNRGTLLLIVVAPAILWVLY 180

[Close]

BLAST of CSPI05G21830.1 vs. NCBI nr
Match: gi|743898126|ref|XP_011042352.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica])

HSP 1 Score: 228.4 bits (581), Expect = 9.9e-57
Identity = 133/196 (67.86%), Postives = 155/196 (79.08%), Query Frame = 1


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISL----PLP---ILTKPS----LAGT 60
           MAATMATMAILNAKC +  +   + P+KP+TKP+SL     LP    ++KP+    L GT
Sbjct: 1   MAATMATMAILNAKCLSINSNKNINPTKPSTKPVSLLSMQNLPKGLTISKPADNTVLTGT 60

Query: 61  AIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINR 120
           AIAGAIF+TLSS + A AAQQIA++AEGDNRG+ALLLPLIPA+AWVLFNILQPALNQINR
Sbjct: 61  AIAGAIFTTLSSCEPAFAAQQIAEIAEGDNRGIALLLPLIPAIAWVLFNILQPALNQINR 120

Query: 121 MRTEKAVIVGLGLGGLLASGLVGTPE------AMAAEAGSDGRGQLLLIVVAPAIAWVLF 180
           MR  K VIVGLGLGGL ASG + TP+      AM A+A SD RG LLLIVVAPAI WVL+
Sbjct: 121 MRQTKGVIVGLGLGGLAASGFISTPDASASEIAMIADATSDNRGTLLLIVVAPAILWVLY 180

The following BLAST results are available for this feature:

BLAST of CSPI05G21830.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBY_SPIOL	2.6e-49	62.81	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN...	[more]
PSBY_ARATH	2.1e-43	58.12	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of CSPI05G21830.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTG2_CUCSA	4.4e-88	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G592810 PE=3 SV=1	[more]
B9HTF3_POPTR	5.3e-57	68.37	Photosystem II core complex proteins psbY OS=Populus trichocarpa GN=POPTR_0010s0...	[more]
A9PIV1_9ROSI	5.3e-57	68.37	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]
A9PJ80_9ROSI	5.3e-57	68.37	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]
A9PJJ8_9ROSI	9.0e-57	68.37	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]

BLAST of CSPI05G21830.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67740.1	1.2e-44	58.12	photosystem II BY	[more]

BLAST of CSPI05G21830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435015\|ref\|XP_004135291.1\|	6.4e-88	100.00	PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi...	[more]
gi\|659090621\|ref\|XP_008446112.1\|	7.5e-81	95.00	PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi...	[more]
gi\|224110818\|ref\|XP_002315645.1\|	7.6e-57	68.37	Photosystem II core complex proteins psbY [Populus trichocarpa]	[more]
gi\|118488993\|gb\|ABK96304.1\|	7.6e-57	68.37	unknown [Populus trichocarpa x Populus deltoides]	[more]
gi\|743898126\|ref\|XP_011042352.1\|	9.9e-57	67.86	PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populu...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009388	PSII_PsbY

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0030145	manganese ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI05G21830	CSPI05G21830	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI05G21830.1	CSPI05G21830.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G21830.1.utr3p1	CSPI05G21830.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G21830.1.cds1	CSPI05G21830.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI05G21830.1.utr5p1	CSPI05G21830.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 78..112 score: 10
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 78..110 score: 1.8E-14coord: 144..176 score: 2.4
None	No IPR available	PANTHER	PTHR34790	FAMILY NOT NAMED	coord: 46..179 score: 3.0