CSPI01G15070 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G15070
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCCR4-NOT transcription complex family protein
LocationChr1 : 10682257 .. 10683732 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCCACTTACTCCGAAATACACGTCACTATTCATTTATAAATATTTTCAATTAAAGAAAAAACGTTTTAGGCAGAACCCAAATTAGACCGAGTCGACTCGCTTACTGTGTGAGTCAAGGACTAATGAAAAAAACGCGTTGAATCAAATACTCTGAACTTTACTACTCTCTCGATCCTCCCACTTTCCTTTTATATTCCTTTTCCTTTTCCATTCTCTATATTAATCTCTCCTTTCTTCTTCTTTTCCATCCAAATCCCTCACTACTTCAATCCCATCTTATTTTAGTTTTTATTTTATTTATTTTATTTAACTTTTACACCATGCTTATCCACGATCTCAACATCAACCACAAATCCATCCAAATTCGTGAAGTTTGGGCTTCCAATCTCGAATCCGAATTTCGTTTGATCCGCGATCTCATCGACCAGTTCCCTTGCGTTTCAATGGACACGGAGTTCCCCGGAGTCATTTTCCCCCAACAAGCCAAACCCAAATCTCCAAATCACCCCTCCCATCACTACCAATTCCTCAAATCCAACGTCGACCTCCTCCATCTCATCCAGATCGGAATCACTCTCTCCGATTCTGACGGAAACTTGCCAGATCTCGGCACCGGCGACACCCGATTCATCTGGGAGTTCAACTTTAAGGACTTTGACGTGGCGCGTGACCTCCACGCTCCGAACTCCATCGAGCTTCTACGCCGTCAGGGCATCGACTTCGACCGGAATCGAGAAGAAGGGATCGATTCCTCCCGCTTCGCCGAGTTGATGATGTCATCGGGACTCGTCTGTAACGACTCGGTCAGTTGGGTGACGTTTCACAGTGCCTATGATTTTGGGTATTTGGTTAAGATTTTAACCCACCAAAAACTTCCAAATGATTTAGAACAGTTCCTCGGCGTTGTTAGGCTCTTCTTCGGCGATAACGTGTACGACATGAAGTACTTGATGCGCTTCTGCCAGAGTCTATACGGCGGTTTGGACCGGATTGCGAAAACTATGAATGTGAACCGGGCGGTTGGAAAGTGCCATCAAGCCGGCTCAGATAGCTTGCTAACGTGGCATGCCTTTCAAAAGATGAGAGATACCTTTTTTGTACAGACTGAAATGCACAAACATGCTGGGGTTTTGTACGGATTAGAGGTCTTCTAATCTAAATTGTACCTTAAATAAATTTAATTTAAATACTATATACCCATTTATTATTAATTACTAATTTCCACTTCTTTTATTTAATTTCTTGAAAGGTAAAGTCTATGGAATGAAGCTATAGATGCAGGTCATTTTGGAGTCAATATTATTCAAAATATAACTACATTACTATAATGTATAATAAGTAAATATTATAGCCTCCGTTTGATAACCCTTATGGCTTCAAGACAATGGTGCATCCAAACACTCATCTTCCTAAATCTCTATCTAAGTTACCTATTATGAAATATCTTCCAACATTTTCATCCCTTACAATTAAC

mRNA sequence

ATGCTTATCCACGATCTCAACATCAACCACAAATCCATCCAAATTCGTGAAGTTTGGGCTTCCAATCTCGAATCCGAATTTCGTTTGATCCGCGATCTCATCGACCAGTTCCCTTGCGTTTCAATGGACACGGAGTTCCCCGGAGTCATTTTCCCCCAACAAGCCAAACCCAAATCTCCAAATCACCCCTCCCATCACTACCAATTCCTCAAATCCAACGTCGACCTCCTCCATCTCATCCAGATCGGAATCACTCTCTCCGATTCTGACGGAAACTTGCCAGATCTCGGCACCGGCGACACCCGATTCATCTGGGAGTTCAACTTTAAGGACTTTGACGTGGCGCGTGACCTCCACGCTCCGAACTCCATCGAGCTTCTACGCCGTCAGGGCATCGACTTCGACCGGAATCGAGAAGAAGGGATCGATTCCTCCCGCTTCGCCGAGTTGATGATGTCATCGGGACTCGTCTGTAACGACTCGGTCAGTTGGGTGACGTTTCACAGTGCCTATGATTTTGGGTATTTGGTTAAGATTTTAACCCACCAAAAACTTCCAAATGATTTAGAACAGTTCCTCGGCGTTGTTAGGCTCTTCTTCGGCGATAACGTGTACGACATGAAGTACTTGATGCGCTTCTGCCAGAGTCTATACGGCGGTTTGGACCGGATTGCGAAAACTATGAATGTGAACCGGGCGGTTGGAAAGTGCCATCAAGCCGGCTCAGATAGCTTGCTAACGTGGCATGCCTTTCAAAAGATGAGAGATACCTTTTTTGTACAGACTGAAATGCACAAACATGCTGGGGTTTTGTACGGATTAGAGGTCTTCTAA

Coding sequence (CDS)

ATGCTTATCCACGATCTCAACATCAACCACAAATCCATCCAAATTCGTGAAGTTTGGGCTTCCAATCTCGAATCCGAATTTCGTTTGATCCGCGATCTCATCGACCAGTTCCCTTGCGTTTCAATGGACACGGAGTTCCCCGGAGTCATTTTCCCCCAACAAGCCAAACCCAAATCTCCAAATCACCCCTCCCATCACTACCAATTCCTCAAATCCAACGTCGACCTCCTCCATCTCATCCAGATCGGAATCACTCTCTCCGATTCTGACGGAAACTTGCCAGATCTCGGCACCGGCGACACCCGATTCATCTGGGAGTTCAACTTTAAGGACTTTGACGTGGCGCGTGACCTCCACGCTCCGAACTCCATCGAGCTTCTACGCCGTCAGGGCATCGACTTCGACCGGAATCGAGAAGAAGGGATCGATTCCTCCCGCTTCGCCGAGTTGATGATGTCATCGGGACTCGTCTGTAACGACTCGGTCAGTTGGGTGACGTTTCACAGTGCCTATGATTTTGGGTATTTGGTTAAGATTTTAACCCACCAAAAACTTCCAAATGATTTAGAACAGTTCCTCGGCGTTGTTAGGCTCTTCTTCGGCGATAACGTGTACGACATGAAGTACTTGATGCGCTTCTGCCAGAGTCTATACGGCGGTTTGGACCGGATTGCGAAAACTATGAATGTGAACCGGGCGGTTGGAAAGTGCCATCAAGCCGGCTCAGATAGCTTGCTAACGTGGCATGCCTTTCAAAAGATGAGAGATACCTTTTTTGTACAGACTGAAATGCACAAACATGCTGGGGTTTTGTACGGATTAGAGGTCTTCTAA
Homology
[Close]
BLAST of CSPI01G15070 vs. Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.9e-107
Identity = 185/267 (69.29%), Postives = 222/267 (83.15%), Query Frame = 1 

Query: 13  IQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNHPSHHYQFLKS 72
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPGVI+          +P++ Y  LKS
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71

Query: 73  NVDLLHLIQIGITLSDSDGNLPDLG-TGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQG 132
           NVD L LIQ+G+TLSD+DGNLPDLG   + R+IWEFNF+DFDV RD HAP+SIELLRR G
Sbjct: 72  NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131

Query: 133 IDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQKLPNDLEQ 192
           IDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDFGYLVKILT ++LP  L +
Sbjct: 132 IDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALRE 191

Query: 193 FLGVVRLFFGDNVYDMKYLMRFC-QSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHA 252
           FLG++R FFGD VYD+K++MRFC Q LYGGLDR+A+++ VNRAVGKCHQAGSDSLLTW A
Sbjct: 192 FLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQA 251

Query: 253 FQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           FQ+MRD +FV+    KHAGVLYGLEVF
Sbjct: 252 FQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of CSPI01G15070 vs. Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 9.8e-104
Identity = 183/275 (66.55%), Postives = 222/275 (80.73%), Query Frame = 1 

Query: 5   DLNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNHPS 64
           DL  +  ++  REVWA NLESEF LI ++ID +P +SMDTEFPGVIF    +  +P+   
Sbjct: 9   DLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL- 68

Query: 65  HHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTR-FIWEFNFKDFDVARDLHAPNS 124
             Y  LK+NVD L LIQ+G+TLSD +GNLPDLG    R FIWEFNF+DFDVARD HAP+S
Sbjct: 69  --YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDS 128

Query: 125 IELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQ 184
           IELLRRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDFGYL+KILT +
Sbjct: 129 IELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRR 188

Query: 185 KLPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQ-SLYGGLDRIAKTMNVNRAVGKCHQAGS 244
           +LP  L +F  V+R+ FG+ VYD+K++M+FC+  L+GGLDR+A+T+ VNRAVGKCHQAGS
Sbjct: 189 ELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGS 248

Query: 245 DSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           DSLLTWHAFQ+MRD +FVQ    KHAGVLYGLEVF
Sbjct: 249 DSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of CSPI01G15070 vs. Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 299.3 bits (765), Expect = 4.4e-80
Identity = 147/271 (54.24%), Postives = 202/271 (74.54%), Query Frame = 1 

Query: 6   LNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNHPSH 65
           L +   SIQIREVW  NLESE  LIR+++D FP V+MDTEFPG++       K+  +  +
Sbjct: 3   LFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKT--NTEY 62

Query: 66  HYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIE 125
           HY+ LK+NV++L +IQ+G+T SD  GNLP  GT +   IW+FNF++FD+  D++A +SIE
Sbjct: 63  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 122

Query: 126 LLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQKL 185
           LLR+ GIDF +N E GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT Q L
Sbjct: 123 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 182

Query: 186 PNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSL 245
           P     F  ++ ++F   VYD+K+LM+FC SL+GGL+++A+ ++V R VG CHQAGSDSL
Sbjct: 183 PETQTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSL 242

Query: 246 LTWHAFQKMRDTFFVQTEMHKHAGVLYGLEV 277
           LT   F+K+++ FF+ + M K++GVLYGL V
Sbjct: 243 LTSCTFRKLQENFFIGS-MEKYSGVLYGLGV 268

[Close]
BLAST of CSPI01G15070 vs. Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 7.0e-78
Identity = 145/271 (53.51%), Postives = 199/271 (73.43%), Query Frame = 1 

Query: 6   LNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNHPSH 65
           L +   SIQIREVW  NL+ E  LIRD++D FP V+MDTEFPG++       KS  +  +
Sbjct: 3   LFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKS--NADY 62

Query: 66  HYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIE 125
           HY+ LK+NV++L +IQ+G+T S+  GNLP  GT D   IW+FNF++FD+  D+ A +SIE
Sbjct: 63  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIE 122

Query: 126 LLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQKL 185
           LL++ GID  +N  +GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT Q L
Sbjct: 123 LLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 182

Query: 186 PNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSL 245
           P+    F  ++ ++F   VYD+K+LM+FC SL+GGL+++A+ + V R VG CHQAGSDSL
Sbjct: 183 PDSQTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSL 242

Query: 246 LTWHAFQKMRDTFFVQTEMHKHAGVLYGLEV 277
           LT   F+K+++ FFV   +HK++GVLYGL V
Sbjct: 243 LTSCTFRKLKENFFV-GPLHKYSGVLYGLGV 267

[Close]
BLAST of CSPI01G15070 vs. Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.3e-75
Identity = 145/269 (53.90%), Postives = 191/269 (71.00%), Query Frame = 1 

Query: 8   INHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNHPSHHY 67
           +   SI IREVW  NL  EF LIR+++D+F  ++MDTEFPGV+    A  K  N    +Y
Sbjct: 5   LKEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNN--DLNY 64

Query: 68  QFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIELL 127
           + LK NVDLL LIQ+G+T SD +GNLP  GT D   IW+FNF++F++  D++A  SIELL
Sbjct: 65  RTLKENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELL 124

Query: 128 RRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQKLPN 187
           R+ GIDF +N E+GID  RF ELMMSSG+V ND++SWVTFH  YDFGYLVK+LT ++LP 
Sbjct: 125 RQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPL 184

Query: 188 DLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLT 247
               F  ++ ++F   VYD+K+LM FC  L+GGL+R+A+ M V R VG CHQAGSDSLLT
Sbjct: 185 KQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLT 244

Query: 248 WHAFQKMRDTFFVQTEMHKHAGVLYGLEV 277
             +F+K+++ +F      K+ GVLYGL V
Sbjct: 245 LGSFRKLKERYF-PGSTEKYTGVLYGLGV 267

[Close]
BLAST of CSPI01G15070 vs. TrEMBL
Match: A0A0A0LYC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168920 PE=4 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 4.3e-159
Identity = 273/277 (98.56%), Postives = 273/277 (98.56%), Query Frame = 1 

Query: 1   MLIHDLNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSP 60
           MLIHDLN NHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQ  PKSP
Sbjct: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSP 60

Query: 61  NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA 120
           NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA
Sbjct: 61  NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA 120

Query: 121 PNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 180
           PNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL
Sbjct: 121 PNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 180

Query: 181 THQKLPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQA 240
           THQKLP DLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQA
Sbjct: 181 THQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQA 240

Query: 241 GSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           GSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF
Sbjct: 241 GSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of CSPI01G15070 vs. TrEMBL
Match: W9RQ69_9ROSA (Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016319 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 5.9e-116
Identity = 206/281 (73.31%), Postives = 235/281 (83.63%), Query Frame = 1 

Query: 1   MLIHDLNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFP---QQAKP 60
           M   D N + K I IREVWASNLE+EF LI DLID+FP +SMDTEFPGV++     Q+KP
Sbjct: 1   MFSEDQNPSRKPIVIREVWASNLEAEFELIGDLIDRFPYISMDTEFPGVVYRATFDQSKP 60

Query: 61  KSPN-HPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
            +    PS HY+ LKSNVD L LIQ+G+TLSD+DGNLPDL  G++RFIWEFNF+DFDVAR
Sbjct: 61  YAYRLRPSDHYRVLKSNVDALSLIQVGLTLSDADGNLPDLEGGESRFIWEFNFRDFDVAR 120

Query: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           DLHAP+SIELL+RQGIDFDRNR EGIDS+RFAELMMSSGLVCND+VSWVTFHSAYDFGYL
Sbjct: 121 DLHAPDSIELLKRQGIDFDRNRSEGIDSARFAELMMSSGLVCNDAVSWVTFHSAYDFGYL 180

Query: 181 VKILTHQKLPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGK 240
           VKILT + LP  L  FL ++R FFGD VYD+K++MRFC SLYGGLDR+AKT+ VNR VGK
Sbjct: 181 VKILTRRCLPGALADFLKILRAFFGDRVYDVKHMMRFCNSLYGGLDRVAKTLEVNRVVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           CHQAGSDSLLTWHAFQK+RD +FV     KHAGVLYGLEVF
Sbjct: 241 CHQAGSDSLLTWHAFQKIRDVYFVTDGPEKHAGVLYGLEVF 281

[Close]
BLAST of CSPI01G15070 vs. TrEMBL
Match: A0A061GVA7_THECC (Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Theobroma cacao GN=TCM_041300 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.3e-115
Identity = 199/281 (70.82%), Postives = 239/281 (85.05%), Query Frame = 1 

Query: 1   MLIHDLNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSP 60
           M   D + + K + IREVW+ NLESEF LI  +ID++P +SMDTEFPG++   +  P  P
Sbjct: 1   MGFQDSHRSSKPVMIREVWSDNLESEFELISQVIDEYPFISMDTEFPGLVIKPKVDPSRP 60

Query: 61  NH----PSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
            H    PS HY+FLKSNVD L+LIQ+G+TLSDS GNLP+LGT DT+FIWEFNF DFDV R
Sbjct: 61  YHSQLQPSDHYKFLKSNVDALNLIQVGLTLSDSSGNLPNLGT-DTQFIWEFNFSDFDVER 120

Query: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           D HAP+SIELLRRQGIDF++NRE+GIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFGYL
Sbjct: 121 DAHAPDSIELLRRQGIDFEKNREKGIDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180

Query: 181 VKILTHQKLPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGK 240
           VKILT ++LP DL++FL ++R+FFG+ VYD+K++MRFC+SLYGGLDR+A+T++VNRAVGK
Sbjct: 181 VKILTRRELPGDLDEFLRILRVFFGNRVYDLKHMMRFCKSLYGGLDRVARTLDVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           CHQAGSDSLLTWHAFQKMRD +FV+    KHAGVLYGLEV+
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 280

[Close]
BLAST of CSPI01G15070 vs. TrEMBL
Match: B9MYV0_POPTR (CCR4-NOT transcription complex family protein OS=Populus trichocarpa GN=POPTR_0004s21070g PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.9e-115
Identity = 200/273 (73.26%), Postives = 236/273 (86.45%), Query Frame = 1 

Query: 11  KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNH------PS 70
           K I IREVW+ NLESEF LIRDLID+FP +SMDTEFPGV+F     P +  +      PS
Sbjct: 5   KEIVIREVWSCNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 71  HHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSI 130
            HY+ LKSNVD L+LIQ+G+TLSD++GNLPDLGTG+ RFIWEFNF+DFDV RD HAP+SI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGTGN-RFIWEFNFRDFDVERDSHAPDSI 124

Query: 131 ELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQK 190
           ELLRRQGIDF+RNREEG+DS+RFAELMMSSGLVCN+SVSWVTFHSAYDFGYLVKILT ++
Sbjct: 125 ELLRRQGIDFERNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRE 184

Query: 191 LPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDS 250
           LP+ L  FL ++R+FFG+N+YD+K++MRFC+SLYGGLDR+A+T+ VNR VGKCHQAGSDS
Sbjct: 185 LPSGLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 251 LLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           LLTWHAFQKMRD FFV+    +HAGVLYGLEVF
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

[Close]
BLAST of CSPI01G15070 vs. TrEMBL
Match: F6HHC1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01090 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 8.6e-115
Identity = 201/279 (72.04%), Postives = 235/279 (84.23%), Query Frame = 1 

Query: 1   MLIHDLNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKS- 60
           M   D + N K + IREVWA NLESEF LI DLIDQ+P +SMDTEFPGV+F      +  
Sbjct: 1   MFSEDSDCNSKPVMIREVWAENLESEFELISDLIDQYPFISMDTEFPGVVFRPSGGEQQF 60

Query: 61  -PNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDL 120
               PS HY+FLKSNVD L LIQ+G+TLSD++GNLPDLGTG+ RFIWEFNF+DFDVARD 
Sbjct: 61  RLRRPSDHYRFLKSNVDALCLIQVGLTLSDANGNLPDLGTGN-RFIWEFNFRDFDVARDA 120

Query: 121 HAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK 180
           HAP+SIELL RQGIDFDRNREEG+DS+RFAELMMSSGLVCN+SVSWVTFHSAYDFGYLVK
Sbjct: 121 HAPDSIELLSRQGIDFDRNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVK 180

Query: 181 ILTHQKLPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCH 240
           ILT + LP+ LE+FL ++R+FFG  VYD+K+LM+FC SLYGGLDR+A+T+ V+RAVGKCH
Sbjct: 181 ILTRRSLPSGLEEFLSILRVFFGTKVYDVKHLMKFCASLYGGLDRVARTLEVDRAVGKCH 240

Query: 241 QAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           QAGSDSLLTWHAFQK+RD +F +    K+AGVLYGLEVF
Sbjct: 241 QAGSDSLLTWHAFQKIRDVYFEKDGTEKYAGVLYGLEVF 278

[Close]
BLAST of CSPI01G15070 vs. TAIR10
Match: AT5G22250.1 (AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-108
Identity = 185/267 (69.29%), Postives = 222/267 (83.15%), Query Frame = 1 

Query: 13  IQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNHPSHHYQFLKS 72
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPGVI+          +P++ Y  LKS
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71

Query: 73  NVDLLHLIQIGITLSDSDGNLPDLG-TGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQG 132
           NVD L LIQ+G+TLSD+DGNLPDLG   + R+IWEFNF+DFDV RD HAP+SIELLRR G
Sbjct: 72  NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131

Query: 133 IDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQKLPNDLEQ 192
           IDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDFGYLVKILT ++LP  L +
Sbjct: 132 IDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALRE 191

Query: 193 FLGVVRLFFGDNVYDMKYLMRFC-QSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLTWHA 252
           FLG++R FFGD VYD+K++MRFC Q LYGGLDR+A+++ VNRAVGKCHQAGSDSLLTW A
Sbjct: 192 FLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQA 251

Query: 253 FQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           FQ+MRD +FV+    KHAGVLYGLEVF
Sbjct: 252 FQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of CSPI01G15070 vs. TAIR10
Match: AT3G44260.1 (AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 377.9 bits (969), Expect = 5.5e-105
Identity = 183/275 (66.55%), Postives = 222/275 (80.73%), Query Frame = 1 

Query: 5   DLNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNHPS 64
           DL  +  ++  REVWA NLESEF LI ++ID +P +SMDTEFPGVIF    +  +P+   
Sbjct: 9   DLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL- 68

Query: 65  HHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTR-FIWEFNFKDFDVARDLHAPNS 124
             Y  LK+NVD L LIQ+G+TLSD +GNLPDLG    R FIWEFNF+DFDVARD HAP+S
Sbjct: 69  --YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDS 128

Query: 125 IELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQ 184
           IELLRRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDFGYL+KILT +
Sbjct: 129 IELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRR 188

Query: 185 KLPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQ-SLYGGLDRIAKTMNVNRAVGKCHQAGS 244
           +LP  L +F  V+R+ FG+ VYD+K++M+FC+  L+GGLDR+A+T+ VNRAVGKCHQAGS
Sbjct: 189 ELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGS 248

Query: 245 DSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           DSLLTWHAFQ+MRD +FVQ    KHAGVLYGLEVF
Sbjct: 249 DSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of CSPI01G15070 vs. TAIR10
Match: AT2G32070.1 (AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 299.3 bits (765), Expect = 2.5e-81
Identity = 147/271 (54.24%), Postives = 202/271 (74.54%), Query Frame = 1 

Query: 6   LNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNHPSH 65
           L +   SIQIREVW  NLESE  LIR+++D FP V+MDTEFPG++       K+  +  +
Sbjct: 3   LFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKT--NTEY 62

Query: 66  HYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIE 125
           HY+ LK+NV++L +IQ+G+T SD  GNLP  GT +   IW+FNF++FD+  D++A +SIE
Sbjct: 63  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 122

Query: 126 LLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQKL 185
           LLR+ GIDF +N E GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT Q L
Sbjct: 123 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 182

Query: 186 PNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSL 245
           P     F  ++ ++F   VYD+K+LM+FC SL+GGL+++A+ ++V R VG CHQAGSDSL
Sbjct: 183 PETQTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSL 242

Query: 246 LTWHAFQKMRDTFFVQTEMHKHAGVLYGLEV 277
           LT   F+K+++ FF+ + M K++GVLYGL V
Sbjct: 243 LTSCTFRKLQENFFIGS-MEKYSGVLYGLGV 268

[Close]
BLAST of CSPI01G15070 vs. TAIR10
Match: AT1G80780.3 (AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 292.0 bits (746), Expect = 4.0e-79
Identity = 145/271 (53.51%), Postives = 199/271 (73.43%), Query Frame = 1 

Query: 6   LNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNHPSH 65
           L +   SIQIREVW  NL+ E  LIRD++D FP V+MDTEFPG++       KS  +  +
Sbjct: 3   LFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKS--NADY 62

Query: 66  HYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIE 125
           HY+ LK+NV++L +IQ+G+T S+  GNLP  GT D   IW+FNF++FD+  D+ A +SIE
Sbjct: 63  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIE 122

Query: 126 LLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQKL 185
           LL++ GID  +N  +GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT Q L
Sbjct: 123 LLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 182

Query: 186 PNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSL 245
           P+    F  ++ ++F   VYD+K+LM+FC SL+GGL+++A+ + V R VG CHQAGSDSL
Sbjct: 183 PDSQTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSL 242

Query: 246 LTWHAFQKMRDTFFVQTEMHKHAGVLYGLEV 277
           LT   F+K+++ FFV   +HK++GVLYGL V
Sbjct: 243 LTSCTFRKLKENFFV-GPLHKYSGVLYGLGV 267

[Close]
BLAST of CSPI01G15070 vs. TAIR10
Match: AT5G10960.1 (AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 283.1 bits (723), Expect = 1.8e-76
Identity = 145/269 (53.90%), Postives = 191/269 (71.00%), Query Frame = 1 

Query: 8   INHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNHPSHHY 67
           +   SI IREVW  NL  EF LIR+++D+F  ++MDTEFPGV+    A  K  N    +Y
Sbjct: 5   LKEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNN--DLNY 64

Query: 68  QFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIELL 127
           + LK NVDLL LIQ+G+T SD +GNLP  GT D   IW+FNF++F++  D++A  SIELL
Sbjct: 65  RTLKENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELL 124

Query: 128 RRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQKLPN 187
           R+ GIDF +N E+GID  RF ELMMSSG+V ND++SWVTFH  YDFGYLVK+LT ++LP 
Sbjct: 125 RQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPL 184

Query: 188 DLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDSLLT 247
               F  ++ ++F   VYD+K+LM FC  L+GGL+R+A+ M V R VG CHQAGSDSLLT
Sbjct: 185 KQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLT 244

Query: 248 WHAFQKMRDTFFVQTEMHKHAGVLYGLEV 277
             +F+K+++ +F      K+ GVLYGL V
Sbjct: 245 LGSFRKLKERYF-PGSTEKYTGVLYGLGV 267

[Close]
BLAST of CSPI01G15070 vs. NCBI nr
Match: gi|449443480|ref|XP_004139505.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus])

HSP 1 Score: 568.5 bits (1464), Expect = 6.2e-159
Identity = 273/277 (98.56%), Postives = 273/277 (98.56%), Query Frame = 1 

Query: 1   MLIHDLNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSP 60
           MLIHDLN NHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQ  PKSP
Sbjct: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSP 60

Query: 61  NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA 120
           NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA
Sbjct: 61  NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA 120

Query: 121 PNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 180
           PNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL
Sbjct: 121 PNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 180

Query: 181 THQKLPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQA 240
           THQKLP DLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQA
Sbjct: 181 THQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQA 240

Query: 241 GSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           GSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF
Sbjct: 241 GSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of CSPI01G15070 vs. NCBI nr
Match: gi|659127315|ref|XP_008463638.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo])

HSP 1 Score: 536.6 bits (1381), Expect = 2.6e-149
Identity = 257/281 (91.46%), Postives = 269/281 (95.73%), Query Frame = 1 

Query: 1   MLIHDLNINHKSI----QIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAK 60
           MLIHDLNINH+SI    QIREVWASNL+SEFRLI DLID+FPCVSMDTEFPGVIFPQQ K
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PKSPNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
           PK PNHPS+HYQFLKSNVD+LHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR
Sbjct: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           D HAP+SIELLRRQGIDF+RNREEGIDSSRFAELMMSSGLVCN+SVSWVTFHSAYDFGYL
Sbjct: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180

Query: 181 VKILTHQKLPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGK 240
           VKILT QKLP  LE+FLGVVR+FFGDNVYDMKY+MRFCQSLYGGLDRIAKTMNVNRAVGK
Sbjct: 181 VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           CHQAGSDSLLTWHAFQKMRDTFFV+ EMHKHAGVLYGLEVF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]
BLAST of CSPI01G15070 vs. NCBI nr
Match: gi|703120119|ref|XP_010102028.1| (putative CCR4-associated factor 1-11-like protein [Morus notabilis])

HSP 1 Score: 425.2 bits (1092), Expect = 8.5e-116
Identity = 206/281 (73.31%), Postives = 235/281 (83.63%), Query Frame = 1 

Query: 1   MLIHDLNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFP---QQAKP 60
           M   D N + K I IREVWASNLE+EF LI DLID+FP +SMDTEFPGV++     Q+KP
Sbjct: 1   MFSEDQNPSRKPIVIREVWASNLEAEFELIGDLIDRFPYISMDTEFPGVVYRATFDQSKP 60

Query: 61  KSPN-HPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
            +    PS HY+ LKSNVD L LIQ+G+TLSD+DGNLPDL  G++RFIWEFNF+DFDVAR
Sbjct: 61  YAYRLRPSDHYRVLKSNVDALSLIQVGLTLSDADGNLPDLEGGESRFIWEFNFRDFDVAR 120

Query: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           DLHAP+SIELL+RQGIDFDRNR EGIDS+RFAELMMSSGLVCND+VSWVTFHSAYDFGYL
Sbjct: 121 DLHAPDSIELLKRQGIDFDRNRSEGIDSARFAELMMSSGLVCNDAVSWVTFHSAYDFGYL 180

Query: 181 VKILTHQKLPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGK 240
           VKILT + LP  L  FL ++R FFGD VYD+K++MRFC SLYGGLDR+AKT+ VNR VGK
Sbjct: 181 VKILTRRCLPGALADFLKILRAFFGDRVYDVKHMMRFCNSLYGGLDRVAKTLEVNRVVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           CHQAGSDSLLTWHAFQK+RD +FV     KHAGVLYGLEVF
Sbjct: 241 CHQAGSDSLLTWHAFQKIRDVYFVTDGPEKHAGVLYGLEVF 281

[Close]
BLAST of CSPI01G15070 vs. NCBI nr
Match: gi|590586505|ref|XP_007015724.1| (Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao])

HSP 1 Score: 424.1 bits (1089), Expect = 1.9e-115
Identity = 199/281 (70.82%), Postives = 239/281 (85.05%), Query Frame = 1 

Query: 1   MLIHDLNINHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSP 60
           M   D + + K + IREVW+ NLESEF LI  +ID++P +SMDTEFPG++   +  P  P
Sbjct: 1   MGFQDSHRSSKPVMIREVWSDNLESEFELISQVIDEYPFISMDTEFPGLVIKPKVDPSRP 60

Query: 61  NH----PSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
            H    PS HY+FLKSNVD L+LIQ+G+TLSDS GNLP+LGT DT+FIWEFNF DFDV R
Sbjct: 61  YHSQLQPSDHYKFLKSNVDALNLIQVGLTLSDSSGNLPNLGT-DTQFIWEFNFSDFDVER 120

Query: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           D HAP+SIELLRRQGIDF++NRE+GIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFGYL
Sbjct: 121 DAHAPDSIELLRRQGIDFEKNREKGIDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180

Query: 181 VKILTHQKLPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGK 240
           VKILT ++LP DL++FL ++R+FFG+ VYD+K++MRFC+SLYGGLDR+A+T++VNRAVGK
Sbjct: 181 VKILTRRELPGDLDEFLRILRVFFGNRVYDLKHMMRFCKSLYGGLDRVARTLDVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           CHQAGSDSLLTWHAFQKMRD +FV+    KHAGVLYGLEV+
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 280

[Close]
BLAST of CSPI01G15070 vs. NCBI nr
Match: gi|566167715|ref|XP_006384784.1| (CCR4-NOT transcription complex family protein [Populus trichocarpa])

HSP 1 Score: 422.9 bits (1086), Expect = 4.2e-115
Identity = 200/273 (73.26%), Postives = 236/273 (86.45%), Query Frame = 1 

Query: 11  KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQAKPKSPNH------PS 70
           K I IREVW+ NLESEF LIRDLID+FP +SMDTEFPGV+F     P +  +      PS
Sbjct: 5   KEIVIREVWSCNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 71  HHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSI 130
            HY+ LKSNVD L+LIQ+G+TLSD++GNLPDLGTG+ RFIWEFNF+DFDV RD HAP+SI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGTGN-RFIWEFNFRDFDVERDSHAPDSI 124

Query: 131 ELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTHQK 190
           ELLRRQGIDF+RNREEG+DS+RFAELMMSSGLVCN+SVSWVTFHSAYDFGYLVKILT ++
Sbjct: 125 ELLRRQGIDFERNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRE 184

Query: 191 LPNDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQAGSDS 250
           LP+ L  FL ++R+FFG+N+YD+K++MRFC+SLYGGLDR+A+T+ VNR VGKCHQAGSDS
Sbjct: 185 LPSGLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 251 LLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 278
           LLTWHAFQKMRD FFV+    +HAGVLYGLEVF
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

The following BLAST results are available for this feature:
BLAST of CSPI01G15070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CAF1K_ARATH1.9e-10769.29Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 ... [more]
CAF1I_ARATH9.8e-10466.55Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE... [more]
CAF1G_ARATH4.4e-8054.24Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE... [more]
CAF1F_ARATH7.0e-7853.51Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE... [more]
CAF1J_ARATH3.3e-7553.90Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 ... [more]
BLAST of CSPI01G15070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYC8_CUCSA4.3e-15998.56Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168920 PE=4 SV=1[more]
W9RQ69_9ROSA5.9e-11673.31Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016... [more]
A0A061GVA7_THECC1.3e-11570.82Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Theobrom... [more]
B9MYV0_POPTR2.9e-11573.26CCR4-NOT transcription complex family protein OS=Populus trichocarpa GN=POPTR_00... [more]
F6HHC1_VITVI8.6e-11572.04Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01090 PE=4 SV=... [more]
BLAST of CSPI01G15070 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22250.11.1e-10869.29 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT3G44260.15.5e-10566.55 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT2G32070.12.5e-8154.24 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G80780.34.0e-7953.51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT5G10960.11.8e-7653.90 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CSPI01G15070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443480|ref|XP_004139505.1|6.2e-15998.56PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus][more]
gi|659127315|ref|XP_008463638.1|2.6e-14991.46PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo][more]
gi|703120119|ref|XP_010102028.1|8.5e-11673.31putative CCR4-associated factor 1-11-like protein [Morus notabilis][more]
gi|590586505|ref|XP_007015724.1|1.9e-11570.82Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma ... [more]
gi|566167715|ref|XP_006384784.1|4.2e-11573.26CCR4-NOT transcription complex family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
biological_process GO:0017148 negative regulation of translation
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0000932 cytoplasmic mRNA processing body
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G15070.1CSPI01G15070.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 165..247
score: 5.3E-6coord: 18..142
score: 2.
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 10..275
score: 3.7E
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 15..274
score: 8.28
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 1..277
score: 2.6E
NoneNo IPR availablePANTHERPTHR10797:SF3CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATEDcoord: 1..277
score: 2.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G15070Cla008626Watermelon (97103) v1cpiwmB070
CSPI01G15070Cla011046Watermelon (97103) v1cpiwmB044
CSPI01G15070Csa1G168920Cucumber (Chinese Long) v2cpicuB000
CSPI01G15070MELO3C025580Melon (DHL92) v3.5.1cpimeB030
CSPI01G15070ClCG02G022360Watermelon (Charleston Gray)cpiwcgB031
CSPI01G15070ClCG01G011640Watermelon (Charleston Gray)cpiwcgB025
CSPI01G15070MELO3C025580.2Melon (DHL92) v3.6.1cpimedB011
CSPI01G15070CsaV3_1G015170Cucumber (Chinese Long) v3cpicucB001
CSPI01G15070Cla97C01G011260Watermelon (97103) v2cpiwmbB009
CSPI01G15070Cla97C02G048450Watermelon (97103) v2cpiwmbB026
CSPI01G15070BhiUN452G30Wax gourdcpiwgoB068
CSPI01G15070Cucsa.319630Cucumber (Gy14) v1cgycpiB482
CSPI01G15070CmaCh18G006400Cucurbita maxima (Rimu)cmacpiB403
CSPI01G15070CmoCh18G006810Cucurbita moschata (Rifu)cmocpiB386
CSPI01G15070Cp4.1LG09g05460Cucurbita pepo (Zucchini)cpecpiB017
CSPI01G15070CsGy1G014850Cucumber (Gy14) v2cgybcpiB001
CSPI01G15070Carg26259Silver-seed gourdcarcpiB0000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G15070Cucumber (Chinese Long) v3cpicucB018
CSPI01G15070Cucumber (Chinese Long) v3cpicucB030
CSPI01G15070Watermelon (97103) v2cpiwmbB018
CSPI01G15070Wild cucumber (PI 183967)cpicpiB015
CSPI01G15070Cucumber (Gy14) v1cgycpiB358
CSPI01G15070Cucurbita maxima (Rimu)cmacpiB222
CSPI01G15070Cucurbita moschata (Rifu)cmocpiB208
CSPI01G15070Cucurbita moschata (Rifu)cmocpiB810
CSPI01G15070Melon (DHL92) v3.5.1cpimeB017
CSPI01G15070Melon (DHL92) v3.5.1cpimeB067
CSPI01G15070Watermelon (97103) v1cpiwmB008
CSPI01G15070Cucurbita pepo (Zucchini)cpecpiB002
CSPI01G15070Bottle gourd (USVL1VR-Ls)cpilsiB006
CSPI01G15070Bottle gourd (USVL1VR-Ls)cpilsiB020
CSPI01G15070Bottle gourd (USVL1VR-Ls)cpilsiB033
CSPI01G15070Bottle gourd (USVL1VR-Ls)cpilsiB049
CSPI01G15070Melon (DHL92) v3.6.1cpimedB061
CSPI01G15070Melon (DHL92) v3.6.1cpimedB077