CsaV3_1G015170 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015170
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCcr4-associated factor, putative
Locationchr1 : 10785577 .. 10786029 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTATCCACGATCTCAACACCAACCACAAATCCATCCAAATTCGTGAAGTTTGGGCTTCCAATCTCGAATCCGAATTTCGTTTGATCCGCGATCTCATCGACCAATTCCCTTGCGTTTCAATGGACACGGAGTTCCCCGGAGTCATTTTCCCCCAACAAGACATACCCAAATCTCCAAATCACCCCTCCCATCACTACCAATTCCTCAAATCCAACGTCGACCTCCTCCATCTCATCCAGATCGGAATCACTCTCTCCGATTCTGACGGAAACTTGCCAGATCTCGGCACCGGCGACACCCGATTTATCTGGGAGTTCAACTTTAAGGACTTTGACGTGGCGCGTGACCTCCACGCTCCGAACTCCATCGAGCTTCTACGCCGTCAGGGCATCGACTTCGACCGGAATCGAGAAGAAGGGATCGATTCCTCCCGCTTCGCCGAGAGTTGA

mRNA sequence

ATGCTTATCCACGATCTCAACACCAACCACAAATCCATCCAAATTCGTGAAGTTTGGGCTTCCAATCTCGAATCCGAATTTCGTTTGATCCGCGATCTCATCGACCAATTCCCTTGCGTTTCAATGGACACGGAGTTCCCCGGAGTCATTTTCCCCCAACAAGACATACCCAAATCTCCAAATCACCCCTCCCATCACTACCAATTCCTCAAATCCAACGTCGACCTCCTCCATCTCATCCAGATCGGAATCACTCTCTCCGATTCTGACGGAAACTTGCCAGATCTCGGCACCGGCGACACCCGATTTATCTGGGAGTTCAACTTTAAGGACTTTGACGTGGCGCGTGACCTCCACGCTCCGAACTCCATCGAGCTTCTACGCCGTCAGGGCATCGACTTCGACCGGAATCGAGAAGAAGGGATCGATTCCTCCCGCTTCGCCGAGAGTTGA

Coding sequence (CDS)

ATGCTTATCCACGATCTCAACACCAACCACAAATCCATCCAAATTCGTGAAGTTTGGGCTTCCAATCTCGAATCCGAATTTCGTTTGATCCGCGATCTCATCGACCAATTCCCTTGCGTTTCAATGGACACGGAGTTCCCCGGAGTCATTTTCCCCCAACAAGACATACCCAAATCTCCAAATCACCCCTCCCATCACTACCAATTCCTCAAATCCAACGTCGACCTCCTCCATCTCATCCAGATCGGAATCACTCTCTCCGATTCTGACGGAAACTTGCCAGATCTCGGCACCGGCGACACCCGATTTATCTGGGAGTTCAACTTTAAGGACTTTGACGTGGCGCGTGACCTCCACGCTCCGAACTCCATCGAGCTTCTACGCCGTCAGGGCATCGACTTCGACCGGAATCGAGAAGAAGGGATCGATTCCTCCCGCTTCGCCGAGAGTTGA

Protein sequence

MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQGIDFDRNREEGIDSSRFAES
Homology
[Close]
BLAST of CsaV3_1G015170 vs. NCBI nr
Match: XP_004139505.1 (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus] >KGN64966.1 hypothetical protein Csa_1G168920 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 1.1e-81
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSP 60
           MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSP
Sbjct: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSP 60

Query: 61  NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA 120
           NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA
Sbjct: 61  NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA 120

Query: 121 PNSIELLRRQGIDFDRNREEGIDSSRFAE 150
           PNSIELLRRQGIDFDRNREEGIDSSRFAE
Sbjct: 121 PNSIELLRRQGIDFDRNREEGIDSSRFAE 149

[Close]
BLAST of CsaV3_1G015170 vs. NCBI nr
Match: XP_008463638.1 (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 4.7e-72
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0 

Query: 1   MLIHDLNTNHKS----IQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDI 60
           MLIHDLN NH+S    IQIREVWASNL+SEFRLI DLID+FPCVSMDTEFPGVIFPQQ  
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PKSPNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
           PK PNHPS+HYQFLKSNVD+LHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR
Sbjct: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAE 150
           D HAP+SIELLRRQGIDF+RNREEGIDSSRFAE
Sbjct: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAE 153

[Close]
BLAST of CsaV3_1G015170 vs. NCBI nr
Match: XP_022142408.1 (probable CCR4-associated factor 1 homolog 11 [Momordica charantia])

HSP 1 Score: 241.1 bits (614), Expect = 2.4e-60
Identity = 119/150 (79.33%), Postives = 127/150 (84.67%), Query Frame = 0 

Query: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIP-KS 60
           M++ DL  N K IQIREVWASNLESEF LIRDLIDQFPCVSMDTEFPGV+F     P   
Sbjct: 1   MVVQDLKNNSKPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHR 60

Query: 61  PNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLH 120
            N PS HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGTG +RFIWEFNF DFDVARD+H
Sbjct: 61  QNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVARDVH 120

Query: 121 APNSIELLRRQGIDFDRNREEGIDSSRFAE 150
           AP+SIELLRRQGIDFDRNR EGIDS RFAE
Sbjct: 121 APDSIELLRRQGIDFDRNRVEGIDSCRFAE 150

[Close]
BLAST of CsaV3_1G015170 vs. NCBI nr
Match: XP_022945861.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata])

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 115/152 (75.66%), Postives = 129/152 (84.87%), Query Frame = 0 

Query: 1   MLIHDLNTNH-KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKS 60
           M+ HDLN NH KSI+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG++F     P +
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  P--NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARD 120
                 S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+ARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 LHAPNSIELLRRQGIDFDRNREEGIDSSRFAE 150
           ++AP+SI+LLRRQGIDFDRNR EGIDS RFAE
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAE 152

[Close]
BLAST of CsaV3_1G015170 vs. NCBI nr
Match: XP_022967098.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 115/152 (75.66%), Postives = 129/152 (84.87%), Query Frame = 0 

Query: 1   MLIHDLNTNH-KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKS 60
           M+ HDLN NH KSI+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG++F     P +
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  P--NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARD 120
                 S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+ARD
Sbjct: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 LHAPNSIELLRRQGIDFDRNREEGIDSSRFAE 150
           ++AP+SI+LLRRQGIDFDRNR EGIDS RFAE
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAE 152

[Close]
BLAST of CsaV3_1G015170 vs. TAIR10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-46
Identity = 88/138 (63.77%), Postives = 108/138 (78.26%), Query Frame = 0 

Query: 13  IQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPSHHYQFLKS 72
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPGVI+          +P++ Y  LKS
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71

Query: 73  NVDLLHLIQIGITLSDSDGNLPDL-GTGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQG 132
           NVD L LIQ+G+TLSD+DGNLPDL G  + R+IWEFNF+DFDV RD HAP+SIELLRR G
Sbjct: 72  NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131

Query: 133 IDFDRNREEGIDSSRFAE 150
           IDF+RNR EG++S RFAE
Sbjct: 132 IDFERNRREGVESERFAE 149

[Close]
BLAST of CsaV3_1G015170 vs. TAIR10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-45
Identity = 91/146 (62.33%), Postives = 112/146 (76.71%), Query Frame = 0 

Query: 5   DLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPS 64
           DL  +  ++  REVWA NLESEF LI ++ID +P +SMDTEFPGVIF + D+  +  +P 
Sbjct: 9   DLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIF-KSDLRFT--NPD 68

Query: 65  HHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTR-FIWEFNFKDFDVARDLHAPNS 124
             Y  LK+NVD L LIQ+G+TLSD +GNLPDLG    R FIWEFNF+DFDVARD HAP+S
Sbjct: 69  DLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDS 128

Query: 125 IELLRRQGIDFDRNREEGIDSSRFAE 150
           IELLRRQGIDF+RN  +G++S RFAE
Sbjct: 129 IELLRRQGIDFERNCRDGVESERFAE 151

[Close]
BLAST of CsaV3_1G015170 vs. TAIR10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-39
Identity = 75/138 (54.35%), Postives = 102/138 (73.91%), Query Frame = 0 

Query: 12  SIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPSHHYQFLK 71
           SIQIREVW  NLESE  LIR+++D FP V+MDTEFPG++   + +     +  +HY+ LK
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVC--RPVGTFKTNTEYHYETLK 68

Query: 72  SNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQG 131
           +NV++L +IQ+G+T SD  GNLP  GT +   IW+FNF++FD+  D++A +SIELLR+ G
Sbjct: 69  TNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSG 128

Query: 132 IDFDRNREEGIDSSRFAE 150
           IDF +N E GIDS RFAE
Sbjct: 129 IDFVKNNEFGIDSKRFAE 144

[Close]
BLAST of CsaV3_1G015170 vs. TAIR10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 148.3 bits (373), Expect = 3.9e-36
Identity = 71/138 (51.45%), Postives = 100/138 (72.46%), Query Frame = 0 

Query: 12  SIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPSHHYQFLK 71
           SIQIREVW  NL+ E  LIRD++D FP V+MDTEFPG++   + +    ++  +HY+ LK
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVV--RPVGTFKSNADYHYETLK 68

Query: 72  SNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQG 131
           +NV++L +IQ+G+T S+  GNLP  GT D   IW+FNF++FD+  D+ A +SIELL++ G
Sbjct: 69  TNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSG 128

Query: 132 IDFDRNREEGIDSSRFAE 150
           ID  +N  +GIDS RFAE
Sbjct: 129 IDLAKNTLDGIDSKRFAE 143

[Close]
BLAST of CsaV3_1G015170 vs. TAIR10
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 144.4 bits (363), Expect = 5.6e-35
Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 0 

Query: 12  SIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPSHHYQFLK 71
           SI IREVW  NL  EF LIR+++D+F  ++MDTEFPGV+       K  N    +Y+ LK
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNN--DLNYRTLK 68

Query: 72  SNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQG 131
            NVDLL LIQ+G+T SD +GNLP  GT D   IW+FNF++F++  D++A  SIELLR+ G
Sbjct: 69  ENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLRQCG 128

Query: 132 IDFDRNREEGIDSSRFAE 150
           IDF +N E+GID  RF E
Sbjct: 129 IDFKKNIEKGIDVVRFGE 143

[Close]
BLAST of CsaV3_1G015170 vs. Swiss-Prot
Match: sp|Q9FMS6|CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.7e-45
Identity = 88/138 (63.77%), Postives = 108/138 (78.26%), Query Frame = 0 

Query: 13  IQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPSHHYQFLKS 72
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPGVI+          +P++ Y  LKS
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71

Query: 73  NVDLLHLIQIGITLSDSDGNLPDL-GTGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQG 132
           NVD L LIQ+G+TLSD+DGNLPDL G  + R+IWEFNF+DFDV RD HAP+SIELLRR G
Sbjct: 72  NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131

Query: 133 IDFDRNREEGIDSSRFAE 150
           IDF+RNR EG++S RFAE
Sbjct: 132 IDFERNRREGVESERFAE 149

[Close]
BLAST of CsaV3_1G015170 vs. Swiss-Prot
Match: sp|Q9LXM2|CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.7e-44
Identity = 91/146 (62.33%), Postives = 112/146 (76.71%), Query Frame = 0 

Query: 5   DLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPS 64
           DL  +  ++  REVWA NLESEF LI ++ID +P +SMDTEFPGVIF + D+  +  +P 
Sbjct: 9   DLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIF-KSDLRFT--NPD 68

Query: 65  HHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTR-FIWEFNFKDFDVARDLHAPNS 124
             Y  LK+NVD L LIQ+G+TLSD +GNLPDLG    R FIWEFNF+DFDVARD HAP+S
Sbjct: 69  DLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDS 128

Query: 125 IELLRRQGIDFDRNREEGIDSSRFAE 150
           IELLRRQGIDF+RN  +G++S RFAE
Sbjct: 129 IELLRRQGIDFERNCRDGVESERFAE 151

[Close]
BLAST of CsaV3_1G015170 vs. Swiss-Prot
Match: sp|Q9SKZ2|CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-38
Identity = 75/138 (54.35%), Postives = 102/138 (73.91%), Query Frame = 0 

Query: 12  SIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPSHHYQFLK 71
           SIQIREVW  NLESE  LIR+++D FP V+MDTEFPG++   + +     +  +HY+ LK
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVC--RPVGTFKTNTEYHYETLK 68

Query: 72  SNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQG 131
           +NV++L +IQ+G+T SD  GNLP  GT +   IW+FNF++FD+  D++A +SIELLR+ G
Sbjct: 69  TNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSG 128

Query: 132 IDFDRNREEGIDSSRFAE 150
           IDF +N E GIDS RFAE
Sbjct: 129 IDFVKNNEFGIDSKRFAE 144

[Close]
BLAST of CsaV3_1G015170 vs. Swiss-Prot
Match: sp|Q9SAI2|CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.9e-35
Identity = 71/138 (51.45%), Postives = 100/138 (72.46%), Query Frame = 0 

Query: 12  SIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPSHHYQFLK 71
           SIQIREVW  NL+ E  LIRD++D FP V+MDTEFPG++   + +    ++  +HY+ LK
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVV--RPVGTFKSNADYHYETLK 68

Query: 72  SNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQG 131
           +NV++L +IQ+G+T S+  GNLP  GT D   IW+FNF++FD+  D+ A +SIELL++ G
Sbjct: 69  TNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSG 128

Query: 132 IDFDRNREEGIDSSRFAE 150
           ID  +N  +GIDS RFAE
Sbjct: 129 IDLAKNTLDGIDSKRFAE 143

[Close]
BLAST of CsaV3_1G015170 vs. Swiss-Prot
Match: sp|Q9LEU4|CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-33
Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 0 

Query: 12  SIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSPNHPSHHYQFLK 71
           SI IREVW  NL  EF LIR+++D+F  ++MDTEFPGV+       K  N    +Y+ LK
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNN--DLNYRTLK 68

Query: 72  SNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIELLRRQG 131
            NVDLL LIQ+G+T SD +GNLP  GT D   IW+FNF++F++  D++A  SIELLR+ G
Sbjct: 69  ENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLRQCG 128

Query: 132 IDFDRNREEGIDSSRFAE 150
           IDF +N E+GID  RF E
Sbjct: 129 IDFKKNIEKGIDVVRFGE 143

[Close]
BLAST of CsaV3_1G015170 vs. TrEMBL
Match: tr|A0A0A0LYC8|A0A0A0LYC8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 7.3e-82
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSP 60
           MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSP
Sbjct: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSP 60

Query: 61  NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA 120
           NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA
Sbjct: 61  NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHA 120

Query: 121 PNSIELLRRQGIDFDRNREEGIDSSRFAE 150
           PNSIELLRRQGIDFDRNREEGIDSSRFAE
Sbjct: 121 PNSIELLRRQGIDFDRNREEGIDSSRFAE 149

[Close]
BLAST of CsaV3_1G015170 vs. TrEMBL
Match: tr|A0A1S3CJQ2|A0A1S3CJQ2_CUCME (probable CCR4-associated factor 1 homolog 11 OS=Cucumis melo OX=3656 GN=LOC103501738 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.1e-72
Identity = 136/153 (88.89%), Postives = 143/153 (93.46%), Query Frame = 0 

Query: 1   MLIHDLNTNHKS----IQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDI 60
           MLIHDLN NH+S    IQIREVWASNL+SEFRLI DLID+FPCVSMDTEFPGVIFPQQ  
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PKSPNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
           PK PNHPS+HYQFLKSNVD+LHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR
Sbjct: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAE 150
           D HAP+SIELLRRQGIDF+RNREEGIDSSRFAE
Sbjct: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAE 153

[Close]
BLAST of CsaV3_1G015170 vs. TrEMBL
Match: tr|W9RQ69|W9RQ69_9ROSA (Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis OX=981085 GN=L484_016319 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.6e-52
Identity = 105/153 (68.63%), Postives = 121/153 (79.08%), Query Frame = 0 

Query: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSP 60
           M   D N + K I IREVWASNLE+EF LI DLID+FP +SMDTEFPGV++        P
Sbjct: 1   MFSEDQNPSRKPIVIREVWASNLEAEFELIGDLIDRFPYISMDTEFPGVVYRATFDQSKP 60

Query: 61  N----HPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120
                 PS HY+ LKSNVD L LIQ+G+TLSD+DGNLPDL  G++RFIWEFNF+DFDVAR
Sbjct: 61  YAYRLRPSDHYRVLKSNVDALSLIQVGLTLSDADGNLPDLEGGESRFIWEFNFRDFDVAR 120

Query: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAE 150
           DLHAP+SIELL+RQGIDFDRNR EGIDS+RFAE
Sbjct: 121 DLHAPDSIELLKRQGIDFDRNRSEGIDSARFAE 153

[Close]
BLAST of CsaV3_1G015170 vs. TrEMBL
Match: tr|F6HHC1|F6HHC1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0080g01090 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 7.9e-52
Identity = 105/151 (69.54%), Postives = 121/151 (80.13%), Query Frame = 0 

Query: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKS- 60
           M   D + N K + IREVWA NLESEF LI DLIDQ+P +SMDTEFPGV+F      +  
Sbjct: 1   MFSEDSDCNSKPVMIREVWAENLESEFELISDLIDQYPFISMDTEFPGVVFRPSGGEQQF 60

Query: 61  -PNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDL 120
               PS HY+FLKSNVD L LIQ+G+TLSD++GNLPDLGTG+ RFIWEFNF+DFDVARD 
Sbjct: 61  RLRRPSDHYRFLKSNVDALCLIQVGLTLSDANGNLPDLGTGN-RFIWEFNFRDFDVARDA 120

Query: 121 HAPNSIELLRRQGIDFDRNREEGIDSSRFAE 150
           HAP+SIELL RQGIDFDRNREEG+DS+RFAE
Sbjct: 121 HAPDSIELLSRQGIDFDRNREEGVDSARFAE 150

[Close]
BLAST of CsaV3_1G015170 vs. TrEMBL
Match: tr|A0A1Q3B4C1|A0A1Q3B4C1_CEPFO (CAF1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06257 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.4e-51
Identity = 102/143 (71.33%), Postives = 115/143 (80.42%), Query Frame = 0 

Query: 11  KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKSP----NHPSHH 70
           K I IREVW+ NLESEF LIR +ID FP +SMDTEFPG++F     P  P      PS H
Sbjct: 5   KPIVIREVWSDNLESEFELIRHVIDDFPFISMDTEFPGIVFRPPVEPTKPYFHQRKPSDH 64

Query: 71  YQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLHAPNSIEL 130
           Y FLKSNVD L+LIQ+G+TLSDS GNLPDLGTG+ +FIWEFNF+DFDVARD HAP+SIEL
Sbjct: 65  YNFLKSNVDALNLIQVGLTLSDSQGNLPDLGTGNHQFIWEFNFRDFDVARDAHAPDSIEL 124

Query: 131 LRRQGIDFDRNREEGIDSSRFAE 150
           LR QGIDFDRNREEG+DS RFAE
Sbjct: 125 LRLQGIDFDRNREEGVDSDRFAE 147

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139505.11.1e-81100.00PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus] >KGN64... [more]
XP_008463638.14.7e-7288.89PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo][more]
XP_022142408.12.4e-6079.33probable CCR4-associated factor 1 homolog 11 [Momordica charantia][more]
XP_022945861.11.1e-5775.66probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata][more]
XP_022967098.11.1e-5775.66probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima][more]
BLAST of CsaV3_1G015170 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22250.13.1e-4663.77Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT3G44260.12.0e-4562.33Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT2G32070.11.3e-3954.35Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G80780.33.9e-3651.45Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT5G10960.15.6e-3553.62Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CsaV3_1G015170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FMS6|CAF1K_ARATH5.7e-4563.77Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=... [more]
sp|Q9LXM2|CAF1I_ARATH3.7e-4462.33Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C... [more]
sp|Q9SKZ2|CAF1G_ARATH2.3e-3854.35Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C... [more]
sp|Q9SAI2|CAF1F_ARATH6.9e-3551.45Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C... [more]
sp|Q9LEU4|CAF1J_ARATH1.0e-3353.62Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=... [more]
BLAST of CsaV3_1G015170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LYC8|A0A0A0LYC8_CUCSA7.3e-82100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=4 SV=1[more]
tr|A0A1S3CJQ2|A0A1S3CJQ2_CUCME3.1e-7288.89probable CCR4-associated factor 1 homolog 11 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
tr|W9RQ69|W9RQ69_9ROSA4.6e-5268.63Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis OX=981085 G... [more]
tr|F6HHC1|F6HHC1_VITVI7.9e-5269.54Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0080g01090 PE=4 SV=... [more]
tr|A0A1Q3B4C1|A0A1Q3B4C1_CEPFO1.4e-5171.33CAF1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_062... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR006941RNase_CAF1
IPR036397RNaseH_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
biological_process GO:0017148 negative regulation of translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0000932 cytoplasmic mRNA processing body
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015170.1CsaV3_1G015170.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3DG3DSA:3.30.420.10coord: 4..150
e-value: 1.4E-58
score: 200.2
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 18..142
e-value: 2.9E-8
score: 33.2
NoneNo IPR availablePANTHERPTHR10797:SF3CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATEDcoord: 7..149
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 7..149
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 9..149

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G015170CSPI01G15070Wild cucumber (PI 183967)cpicucB001
CsaV3_1G015170Cucsa.319630Cucumber (Gy14) v1cgycucB496
CsaV3_1G015170CmaCh18G006400Cucurbita maxima (Rimu)cmacucB0476
CsaV3_1G015170CmoCh18G006810Cucurbita moschata (Rifu)cmocucB0460
CsaV3_1G015170Cp4.1LG09g05460Cucurbita pepo (Zucchini)cpecucB0024
CsaV3_1G015170CsGy1G014850Cucumber (Gy14) v2cgybcucB002
CsaV3_1G015170Cla011046Watermelon (97103) v1cucwmB049
CsaV3_1G015170MELO3C025580Melon (DHL92) v3.5.1cucmeB030
CsaV3_1G015170ClCG01G011640Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G015170MELO3C025580.2Melon (DHL92) v3.6.1cucmedB009
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_1G015170CsaV3_UNG232220Cucumber (Chinese Long) v3cuccucB005
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G015170Cucumber (Chinese Long) v3cuccucB023
CsaV3_1G015170Cucumber (Chinese Long) v3cuccucB046
CsaV3_1G015170Cucumber (Chinese Long) v3cuccucB053
CsaV3_1G015170Silver-seed gourdcarcucB0000
CsaV3_1G015170Cucurbita maxima (Rimu)cmacucB0253
CsaV3_1G015170Cucurbita maxima (Rimu)cmacucB0694
CsaV3_1G015170Cucurbita maxima (Rimu)cmacucB0962
CsaV3_1G015170Cucurbita maxima (Rimu)cmacucB1004
CsaV3_1G015170Cucurbita moschata (Rifu)cmocucB0239
CsaV3_1G015170Cucurbita moschata (Rifu)cmocucB0951
CsaV3_1G015170Cucurbita pepo (Zucchini)cpecucB0003
CsaV3_1G015170Cucurbita pepo (Zucchini)cpecucB1044
CsaV3_1G015170Wild cucumber (PI 183967)cpicucB318
CsaV3_1G015170Bottle gourd (USVL1VR-Ls)cuclsiB005
CsaV3_1G015170Bottle gourd (USVL1VR-Ls)cuclsiB017
CsaV3_1G015170Bottle gourd (USVL1VR-Ls)cuclsiB021
CsaV3_1G015170Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G015170Melon (DHL92) v3.5.1cucmeB016
CsaV3_1G015170Melon (DHL92) v3.5.1cucmeB072
CsaV3_1G015170Watermelon (Charleston Gray)cucwcgB029
CsaV3_1G015170Watermelon (Charleston Gray)cucwcgB030
CsaV3_1G015170Watermelon (97103) v1cucwmB009
CsaV3_1G015170Watermelon (97103) v1cucwmB064
CsaV3_1G015170Watermelon (97103) v1cucwmB074
CsaV3_1G015170Watermelon (97103) v2cucwmbB008
CsaV3_1G015170Watermelon (97103) v2cucwmbB017
CsaV3_1G015170Watermelon (97103) v2cucwmbB025
CsaV3_1G015170Wax gourdcucwgoB072