Cla011046 (gene) Watermelon (97103) v1

Overview
NameCla011046
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1
LocationChr1 : 16412136 .. 16412972 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATCCACGATCTGAACACCGTCAATAAAACCATCAAAATCCGTGAAGTTTGGGCTTCCAATCTCGAATTCGAATTCCAGTTGATTCGCAATCTCATCGATCAATTCCCTTGCGTTTCAATGGACACGGAATTCCCCGGAATCGTTTTCGCCGATCCAACCAGACCCTTCAACTCTCAAAATCAGCCTTCCGATCACTACAGACTCCTCAAATCCAACGTCGACGCTCTCAACCTCATCCAGATCGGAATCACTCTCTCCGATTCCCACGGAAACTTGCCGGATCTCGGCACCGACGACACCCGATTCATCTGGGAGTTCAATTTCATGGATTTCGACGTGGCGCGTGACCTCCACGCTCCGGACTCCATCGAGCTTCTCCGCCGTCAGGGCATCGACTTCAACCGGAATCGGGTAGAAGGGATCGACTCGTCCCGCTTCGCCGAGTTGATGATGTCATCAGGACTCGTCTGTAACGACTCAGTGAGTTGGGTGACGTTTCACAGCGCCTACGATTTTGGGTATTTGGTTAAGATTTTGACTCAGCGAAGCCTTCCAGATCGGGTAGACGAATTCCTCGGCGTTCTTAGGGTTTTCTTCGGCGATAACGTGTACGATATGAAGTACTTGATGCGGTTTTGCGAGAGTCTCTACGGCGGTTTGGACCGGATTGCTAAAATTCTGAACGTGAACCGGGCGGTTGGAAAGTGCCATCAGGCCGGGTCCGATAGCTTGCTGACGTGGCAAGCGTTTCAGAAGATGAGAGATACCTATTTTGTACAGAATGAGGTGCAGAAACATGCTGGGGTTCTCTATGGATTAGAGATCTTCTAA

mRNA sequence

ATGGTTATCCACGATCTGAACACCGTCAATAAAACCATCAAAATCCGTGAAGTTTGGGCTTCCAATCTCGAATTCGAATTCCAGTTGATTCGCAATCTCATCGATCAATTCCCTTGCGTTTCAATGGACACGGAATTCCCCGGAATCGTTTTCGCCGATCCAACCAGACCCTTCAACTCTCAAAATCAGCCTTCCGATCACTACAGACTCCTCAAATCCAACGTCGACGCTCTCAACCTCATCCAGATCGGAATCACTCTCTCCGATTCCCACGGAAACTTGCCGGATCTCGGCACCGACGACACCCGATTCATCTGGGAGTTCAATTTCATGGATTTCGACGTGGCGCGTGACCTCCACGCTCCGGACTCCATCGAGCTTCTCCGCCGTCAGGGCATCGACTTCAACCGGAATCGGGTAGAAGGGATCGACTCGTCCCGCTTCGCCGAGTTGATGATGTCATCAGGACTCGTCTGTAACGACTCAGTGAGTTGGGTGACGTTTCACAGCGCCTACGATTTTGGGTATTTGGTTAAGATTTTGACTCAGCGAAGCCTTCCAGATCGGGTAGACGAATTCCTCGGCGTTCTTAGGGTTTTCTTCGGCGATAACGTGTACGATATGAAGTACTTGATGCGGTTTTGCGAGAGTCTCTACGGCGGTTTGGACCGGATTGCTAAAATTCTGAACGTGAACCGGGCGGTTGGAAAGTGCCATCAGGCCGGGTCCGATAGCTTGCTGACGTGGCAAGCGTTTCAGAAGATGAGAGATACCTATTTTGTACAGAATGAGGTGCAGAAACATGCTGGGGTTCTCTATGGATTAGAGATCTTCTAA

Coding sequence (CDS)

ATGGTTATCCACGATCTGAACACCGTCAATAAAACCATCAAAATCCGTGAAGTTTGGGCTTCCAATCTCGAATTCGAATTCCAGTTGATTCGCAATCTCATCGATCAATTCCCTTGCGTTTCAATGGACACGGAATTCCCCGGAATCGTTTTCGCCGATCCAACCAGACCCTTCAACTCTCAAAATCAGCCTTCCGATCACTACAGACTCCTCAAATCCAACGTCGACGCTCTCAACCTCATCCAGATCGGAATCACTCTCTCCGATTCCCACGGAAACTTGCCGGATCTCGGCACCGACGACACCCGATTCATCTGGGAGTTCAATTTCATGGATTTCGACGTGGCGCGTGACCTCCACGCTCCGGACTCCATCGAGCTTCTCCGCCGTCAGGGCATCGACTTCAACCGGAATCGGGTAGAAGGGATCGACTCGTCCCGCTTCGCCGAGTTGATGATGTCATCAGGACTCGTCTGTAACGACTCAGTGAGTTGGGTGACGTTTCACAGCGCCTACGATTTTGGGTATTTGGTTAAGATTTTGACTCAGCGAAGCCTTCCAGATCGGGTAGACGAATTCCTCGGCGTTCTTAGGGTTTTCTTCGGCGATAACGTGTACGATATGAAGTACTTGATGCGGTTTTGCGAGAGTCTCTACGGCGGTTTGGACCGGATTGCTAAAATTCTGAACGTGAACCGGGCGGTTGGAAAGTGCCATCAGGCCGGGTCCGATAGCTTGCTGACGTGGCAAGCGTTTCAGAAGATGAGAGATACCTATTTTGTACAGAATGAGGTGCAGAAACATGCTGGGGTTCTCTATGGATTAGAGATCTTCTAA

Protein sequence

MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF
Homology
[Close]
BLAST of Cla011046 vs. Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.6e-106
Identity = 189/272 (69.49%), Postives = 222/272 (81.62%), Query Frame = 1 

Query: 9   VNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSDHY 68
           ++  I IR+VWA NLE EF LIR +++ +P +SMDTEFPG+++          N P+  Y
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGN-PNYLY 67

Query: 69  RLLKSNVDALNLIQIGITLSDSHGNLPDLGTD-DTRFIWEFNFMDFDVARDLHAPDSIEL 128
            LLKSNVDAL+LIQ+G+TLSD+ GNLPDLG   + R+IWEFNF DFDV RD HAPDSIEL
Sbjct: 68  NLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIEL 127

Query: 129 LRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLP 188
           LRR GIDF RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDFGYLVKILT+R LP
Sbjct: 128 LRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLP 187

Query: 189 DRVDEFLGVLRVFFGDNVYDMKYLMRFCES-LYGGLDRIAKILNVNRAVGKCHQAGSDSL 248
             + EFLG+LR FFGD VYD+K++MRFCE  LYGGLDR+A+ L VNRAVGKCHQAGSDSL
Sbjct: 188 VALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSL 247

Query: 249 LTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           LTWQAFQ+MRD YFV++  +KHAGVLYGLE+F
Sbjct: 248 LTWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of Cla011046 vs. Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.8e-105
Identity = 190/276 (68.84%), Postives = 220/276 (79.71%), Query Frame = 1 

Query: 5   DLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQP 64
           DL     T+  REVWA NLE EF+LI  +ID +P +SMDTEFPG++F    R  N    P
Sbjct: 9   DLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTN----P 68

Query: 65  SDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTR-FIWEFNFMDFDVARDLHAPD 124
            D Y LLK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFDVARD HAPD
Sbjct: 69  DDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPD 128

Query: 125 SIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQ 184
           SIELLRRQGIDF RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDFGYL+KILT+
Sbjct: 129 SIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTR 188

Query: 185 RSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCE-SLYGGLDRIAKILNVNRAVGKCHQAG 244
           R LP  + EF  V+RV FG+ VYD+K++M+FCE  L+GGLDR+A+ L VNRAVGKCHQAG
Sbjct: 189 RELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAG 248

Query: 245 SDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           SDSLLTW AFQ+MRD YFVQ+  +KHAGVLYGLE+F
Sbjct: 249 SDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of Cla011046 vs. Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 288.9 bits (738), Expect = 6.0e-77
Identity = 145/266 (54.51%), Postives = 196/266 (73.68%), Query Frame = 1 

Query: 12  TIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSDHYRLL 71
           +I+IREVW  NLE E  LIR ++D FP V+MDTEFPGIV   P   F +  +   HY  L
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTFKTNTEY--HYETL 68

Query: 72  KSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRRQ 131
           K+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FD+  D++A DSIELLR+ 
Sbjct: 69  KTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQS 128

Query: 132 GIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRVD 191
           GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LP+   
Sbjct: 129 GIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQT 188

Query: 192 EFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQA 251
            F  ++ V+F   VYD+K+LM+FC SL+GGL+++A++L+V R VG CHQAGSDSLLT   
Sbjct: 189 GFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCT 248

Query: 252 FQKMRDTYFVQNEVQKHAGVLYGLEI 278
           F+K+++ +F+   ++K++GVLYGL +
Sbjct: 249 FRKLQENFFI-GSMEKYSGVLYGLGV 268

[Close]
BLAST of Cla011046 vs. Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.3e-75
Identity = 144/267 (53.93%), Postives = 196/267 (73.41%), Query Frame = 1 

Query: 12  TIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSD-HYRL 71
           +I+IREVW  NL+ E  LIR+++D FP V+MDTEFPGIV     RP  +    +D HY  
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 72  LKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRR 131
           LK+NV+ L +IQ+G+T S+  GNLP  GTD    IW+FNF +FD+  D+ A DSIELL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGTDKY-CIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 132 QGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRV 191
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LPD  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 192 DEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQ 251
            +F  ++ V+F   VYD+K+LM+FC SL+GGL+++A++L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 252 AFQKMRDTYFVQNEVQKHAGVLYGLEI 278
            F+K+++ +FV   + K++GVLYGL +
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGLGV 267

[Close]
BLAST of Cla011046 vs. Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.1e-74
Identity = 144/266 (54.14%), Postives = 188/266 (70.68%), Query Frame = 1 

Query: 12  TIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSDHYRLL 71
           +I IREVW  NL  EF LIR ++D+F  ++MDTEFPG+V   P   F   N  +  YR L
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLK-PVATFKYNNDLN--YRTL 68

Query: 72  KSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRRQ 131
           K NVD L LIQ+G+T SD +GNLP  GTD    IW+FNF +F++  D++A +SIELLR+ 
Sbjct: 69  KENVDLLKLIQVGLTFSDENGNLPTCGTDKF-CIWQFNFREFNIGEDIYASESIELLRQC 128

Query: 132 GIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRVD 191
           GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDFGYLVK+LT + LP +  
Sbjct: 129 GIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQA 188

Query: 192 EFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQA 251
           +F  +L V+F   VYD+K+LM FC  L+GGL+R+A+++ V R VG CHQAGSDSLLT  +
Sbjct: 189 DFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGS 248

Query: 252 FQKMRDTYFVQNEVQKHAGVLYGLEI 278
           F+K+++ YF     +K+ GVLYGL +
Sbjct: 249 FRKLKERYF-PGSTEKYTGVLYGLGV 267

[Close]
BLAST of Cla011046 vs. TrEMBL
Match: A0A0A0LYC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168920 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 4.2e-130
Identity = 229/278 (82.37%), Postives = 252/278 (90.65%), Query Frame = 1 

Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNS 60
           M+IHDLNT +K+I+IREVWASNLE EF+LIR+LIDQFPCVSMDTEFPG++F     P  S
Sbjct: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIP-KS 60

Query: 61  QNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLH 120
            N PS HY+ LKSNVD L+LIQIGITLSDS GNLPDLGT DTRFIWEFNF DFDVARDLH
Sbjct: 61  PNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLH 120

Query: 121 APDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180
           AP+SIELLRRQGIDF+RNR EGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI
Sbjct: 121 APNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180

Query: 181 LTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQ 240
           LT + LP  +++FLGV+R+FFGDNVYDMKYLMRFC+SLYGGLDRIAK +NVNRAVGKCHQ
Sbjct: 181 LTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQ 240

Query: 241 AGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           AGSDSLLTW AFQKMRDT+FVQ E+ KHAGVLYGLE+F
Sbjct: 241 AGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of Cla011046 vs. TrEMBL
Match: A0A061GVA7_THECC (Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Theobroma cacao GN=TCM_041300 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.1e-117
Identity = 207/281 (73.67%), Postives = 243/281 (86.48%), Query Frame = 1 

Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVF---ADPTRP 60
           M   D +  +K + IREVW+ NLE EF+LI  +ID++P +SMDTEFPG+V     DP+RP
Sbjct: 1   MGFQDSHRSSKPVMIREVWSDNLESEFELISQVIDEYPFISMDTEFPGLVIKPKVDPSRP 60

Query: 61  FNSQNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVAR 120
           ++SQ QPSDHY+ LKSNVDALNLIQ+G+TLSDS GNLP+LGTD T+FIWEFNF DFDV R
Sbjct: 61  YHSQLQPSDHYKFLKSNVDALNLIQVGLTLSDSSGNLPNLGTD-TQFIWEFNFSDFDVER 120

Query: 121 DLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           D HAPDSIELLRRQGIDF +NR +GIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFGYL
Sbjct: 121 DAHAPDSIELLRRQGIDFEKNREKGIDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180

Query: 181 VKILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGK 240
           VKILT+R LP  +DEFL +LRVFFG+ VYD+K++MRFC+SLYGGLDR+A+ L+VNRAVGK
Sbjct: 181 VKILTRRELPGDLDEFLRILRVFFGNRVYDLKHMMRFCKSLYGGLDRVARTLDVNRAVGK 240

Query: 241 CHQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           CHQAGSDSLLTW AFQKMRD YFV++  +KHAGVLYGLE++
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 280

[Close]
BLAST of Cla011046 vs. TrEMBL
Match: A0A0D2NQG1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G114000 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 4.1e-117
Identity = 205/280 (73.21%), Postives = 242/280 (86.43%), Query Frame = 1 

Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVF---ADPTRP 60
           M   D + V++ IKIREVW+ NL+ EF+LI   ID++P +SMDTEFPG+VF    DPTRP
Sbjct: 1   MGFEDPDRVSRHIKIREVWSHNLDSEFELISQAIDEYPFISMDTEFPGLVFRPKVDPTRP 60

Query: 61  FNSQNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVAR 120
           + +Q +PSDHY++LKSNVDALNLIQ+G+TL+DS GNLP LGTDD +FIWEFNF DFDV R
Sbjct: 61  YGAQFRPSDHYKVLKSNVDALNLIQVGLTLTDSSGNLPTLGTDDVQFIWEFNFRDFDVDR 120

Query: 121 DLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           D HAPDSIELLRRQGIDF +N+ +GIDS RFAELMMSSGLVCN+SVSWVTFHSAYDFGYL
Sbjct: 121 DAHAPDSIELLRRQGIDFEKNKEKGIDSLRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180

Query: 181 VKILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGK 240
           VKILT+R LP  +DEFL VLRVFFG+ VYD+K++M+FC+SLYGGLDR+A+ L+VNRAVGK
Sbjct: 181 VKILTRRDLPGGLDEFLRVLRVFFGNRVYDVKHMMKFCKSLYGGLDRVARTLDVNRAVGK 240

Query: 241 CHQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEI 278
           CHQAGSDSLLTW AFQK+RD YFV +  +KHAGVLYGLEI
Sbjct: 241 CHQAGSDSLLTWHAFQKIRDVYFVNDGPEKHAGVLYGLEI 280

[Close]
BLAST of Cla011046 vs. TrEMBL
Match: M5WC84_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009650mg PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 1.2e-116
Identity = 206/277 (74.37%), Postives = 239/277 (86.28%), Query Frame = 1 

Query: 5   DLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVF---ADPTRPFNSQ 64
           D N   K I IREVWA NLE EF+LI+++ID +P +SMDTEFPG++F    D TRP++SQ
Sbjct: 7   DPNPKQKPIVIREVWAHNLESEFELIQSVIDAYPFISMDTEFPGLIFRPAVDTTRPYSSQ 66

Query: 65  NQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHA 124
            +PSDHYR+LKSNVDAL+LIQ+G+TLSDS GNLPDLG   TRFIWEFNF DFDVARD HA
Sbjct: 67  LRPSDHYRVLKSNVDALSLIQVGLTLSDSRGNLPDLGGSPTRFIWEFNFSDFDVARDPHA 126

Query: 125 PDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 184
           PDSI LLRRQGIDF+RNR EG+DS+RFA LMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL
Sbjct: 127 PDSIALLRRQGIDFDRNRSEGVDSARFAALMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 186

Query: 185 TQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQA 244
           T+R+LP  + EFL +LRVFFG+ VYD+K++MRFC+SLYGGLDR+A+ L V+RAVGKCHQA
Sbjct: 187 TRRNLPSGLVEFLRILRVFFGNRVYDVKHMMRFCKSLYGGLDRVARTLEVDRAVGKCHQA 246

Query: 245 GSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           GSDSLLTW AFQKMRD YFV    ++HAGVLYGLE+F
Sbjct: 247 GSDSLLTWHAFQKMRDVYFVHGGPEQHAGVLYGLEVF 283

[Close]
BLAST of Cla011046 vs. TrEMBL
Match: W9RQ69_9ROSA (Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016319 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.3e-115
Identity = 205/281 (72.95%), Postives = 239/281 (85.05%), Query Frame = 1 

Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFA---DPTRP 60
           M   D N   K I IREVWASNLE EF+LI +LID+FP +SMDTEFPG+V+    D ++P
Sbjct: 1   MFSEDQNPSRKPIVIREVWASNLEAEFELIGDLIDRFPYISMDTEFPGVVYRATFDQSKP 60

Query: 61  FNSQNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVAR 120
           +  + +PSDHYR+LKSNVDAL+LIQ+G+TLSD+ GNLPDL   ++RFIWEFNF DFDVAR
Sbjct: 61  YAYRLRPSDHYRVLKSNVDALSLIQVGLTLSDADGNLPDLEGGESRFIWEFNFRDFDVAR 120

Query: 121 DLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           DLHAPDSIELL+RQGIDF+RNR EGIDS+RFAELMMSSGLVCND+VSWVTFHSAYDFGYL
Sbjct: 121 DLHAPDSIELLKRQGIDFDRNRSEGIDSARFAELMMSSGLVCNDAVSWVTFHSAYDFGYL 180

Query: 181 VKILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGK 240
           VKILT+R LP  + +FL +LR FFGD VYD+K++MRFC SLYGGLDR+AK L VNR VGK
Sbjct: 181 VKILTRRCLPGALADFLKILRAFFGDRVYDVKHMMRFCNSLYGGLDRVAKTLEVNRVVGK 240

Query: 241 CHQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           CHQAGSDSLLTW AFQK+RD YFV +  +KHAGVLYGLE+F
Sbjct: 241 CHQAGSDSLLTWHAFQKIRDVYFVTDGPEKHAGVLYGLEVF 281

[Close]
BLAST of Cla011046 vs. NCBI nr
Match: gi|449443480|ref|XP_004139505.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus])

HSP 1 Score: 472.2 bits (1214), Expect = 6.1e-130
Identity = 229/278 (82.37%), Postives = 252/278 (90.65%), Query Frame = 1 

Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNS 60
           M+IHDLNT +K+I+IREVWASNLE EF+LIR+LIDQFPCVSMDTEFPG++F     P  S
Sbjct: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIP-KS 60

Query: 61  QNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLH 120
            N PS HY+ LKSNVD L+LIQIGITLSDS GNLPDLGT DTRFIWEFNF DFDVARDLH
Sbjct: 61  PNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLH 120

Query: 121 APDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180
           AP+SIELLRRQGIDF+RNR EGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI
Sbjct: 121 APNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180

Query: 181 LTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQ 240
           LT + LP  +++FLGV+R+FFGDNVYDMKYLMRFC+SLYGGLDRIAK +NVNRAVGKCHQ
Sbjct: 181 LTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQ 240

Query: 241 AGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           AGSDSLLTW AFQKMRDT+FVQ E+ KHAGVLYGLE+F
Sbjct: 241 AGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of Cla011046 vs. NCBI nr
Match: gi|659127315|ref|XP_008463638.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo])

HSP 1 Score: 464.9 bits (1195), Expect = 9.7e-128
Identity = 226/282 (80.14%), Postives = 252/282 (89.36%), Query Frame = 1 

Query: 1   MVIHDLN----TVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTR 60
           M+IHDLN    +++K I+IREVWASNL+ EF+LI +LID+FPCVSMDTEFPG++F   T+
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PFNSQNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVA 120
           P    N PS HY+ LKSNVD L+LIQIGITLSDS GNLPDLGT DTRFIWEFNF DFDVA
Sbjct: 61  P-KFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVA 120

Query: 121 RDLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGY 180
           RD HAPDSIELLRRQGIDF RNR EGIDSSRFAELMMSSGLVCN+SVSWVTFHSAYDFGY
Sbjct: 121 RDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGY 180

Query: 181 LVKILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVG 240
           LVKILTQ+ LP  ++EFLGV+RVFFGDNVYDMKY+MRFC+SLYGGLDRIAK +NVNRAVG
Sbjct: 181 LVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVG 240

Query: 241 KCHQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           KCHQAGSDSLLTW AFQKMRDT+FV+NE+ KHAGVLYGLE+F
Sbjct: 241 KCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]
BLAST of Cla011046 vs. NCBI nr
Match: gi|645306450|ref|XP_008246147.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Prunus mume])

HSP 1 Score: 432.6 bits (1111), Expect = 5.3e-118
Identity = 207/277 (74.73%), Postives = 239/277 (86.28%), Query Frame = 1 

Query: 5   DLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVF---ADPTRPFNSQ 64
           D N   K I IREVWA NLE EF+LI+++ID +P +SMDTEFPG++F    DPTRP++SQ
Sbjct: 7   DPNPKQKPIVIREVWAHNLESEFELIQSVIDAYPFISMDTEFPGLIFRPTVDPTRPYSSQ 66

Query: 65  NQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHA 124
            QPSDHYR+LKSNVDAL+LIQ+G+TLSD  GNLPDLG   TRFIWEFNF DFDV RD HA
Sbjct: 67  LQPSDHYRVLKSNVDALSLIQVGLTLSDCRGNLPDLGGSPTRFIWEFNFSDFDVTRDPHA 126

Query: 125 PDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 184
           PDSI LLRRQGIDF+RNR EG+DS+RFA LMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL
Sbjct: 127 PDSIALLRRQGIDFDRNRSEGVDSARFAALMMSSGLVCNDSVSWVTFHSAYDFGYLVKIL 186

Query: 185 TQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQA 244
           T+R+LP  +DEFL +LRVFFG+ VYD+K++MRFC+SLYGGLDR+A+ L V+RAVGKCHQA
Sbjct: 187 TRRNLPSGLDEFLRILRVFFGNRVYDVKHMMRFCKSLYGGLDRVARTLKVDRAVGKCHQA 246

Query: 245 GSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           GSDSLLTW AFQKMRD YFV    ++HAGVLYGLE+F
Sbjct: 247 GSDSLLTWHAFQKMRDVYFVHGGPERHAGVLYGLEVF 283

[Close]
BLAST of Cla011046 vs. NCBI nr
Match: gi|590586505|ref|XP_007015724.1| (Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao])

HSP 1 Score: 431.0 bits (1107), Expect = 1.6e-117
Identity = 207/281 (73.67%), Postives = 243/281 (86.48%), Query Frame = 1 

Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVF---ADPTRP 60
           M   D +  +K + IREVW+ NLE EF+LI  +ID++P +SMDTEFPG+V     DP+RP
Sbjct: 1   MGFQDSHRSSKPVMIREVWSDNLESEFELISQVIDEYPFISMDTEFPGLVIKPKVDPSRP 60

Query: 61  FNSQNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVAR 120
           ++SQ QPSDHY+ LKSNVDALNLIQ+G+TLSDS GNLP+LGTD T+FIWEFNF DFDV R
Sbjct: 61  YHSQLQPSDHYKFLKSNVDALNLIQVGLTLSDSSGNLPNLGTD-TQFIWEFNFSDFDVER 120

Query: 121 DLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           D HAPDSIELLRRQGIDF +NR +GIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFGYL
Sbjct: 121 DAHAPDSIELLRRQGIDFEKNREKGIDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180

Query: 181 VKILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGK 240
           VKILT+R LP  +DEFL +LRVFFG+ VYD+K++MRFC+SLYGGLDR+A+ L+VNRAVGK
Sbjct: 181 VKILTRRELPGDLDEFLRILRVFFGNRVYDLKHMMRFCKSLYGGLDRVARTLDVNRAVGK 240

Query: 241 CHQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           CHQAGSDSLLTW AFQKMRD YFV++  +KHAGVLYGLE++
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 280

[Close]
BLAST of Cla011046 vs. NCBI nr
Match: gi|823172477|ref|XP_012485138.1| (PREDICTED: probable CCR4-associated factor 1 homolog 9 [Gossypium raimondii])

HSP 1 Score: 429.1 bits (1102), Expect = 5.9e-117
Identity = 205/280 (73.21%), Postives = 242/280 (86.43%), Query Frame = 1 

Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVF---ADPTRP 60
           M   D + V++ IKIREVW+ NL+ EF+LI   ID++P +SMDTEFPG+VF    DPTRP
Sbjct: 1   MGFEDPDRVSRHIKIREVWSHNLDSEFELISQAIDEYPFISMDTEFPGLVFRPKVDPTRP 60

Query: 61  FNSQNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVAR 120
           + +Q +PSDHY++LKSNVDALNLIQ+G+TL+DS GNLP LGTDD +FIWEFNF DFDV R
Sbjct: 61  YGAQFRPSDHYKVLKSNVDALNLIQVGLTLTDSSGNLPTLGTDDVQFIWEFNFRDFDVDR 120

Query: 121 DLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           D HAPDSIELLRRQGIDF +N+ +GIDS RFAELMMSSGLVCN+SVSWVTFHSAYDFGYL
Sbjct: 121 DAHAPDSIELLRRQGIDFEKNKEKGIDSLRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180

Query: 181 VKILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGK 240
           VKILT+R LP  +DEFL VLRVFFG+ VYD+K++M+FC+SLYGGLDR+A+ L+VNRAVGK
Sbjct: 181 VKILTRRDLPGGLDEFLRVLRVFFGNRVYDVKHMMKFCKSLYGGLDRVARTLDVNRAVGK 240

Query: 241 CHQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEI 278
           CHQAGSDSLLTW AFQK+RD YFV +  +KHAGVLYGLEI
Sbjct: 241 CHQAGSDSLLTWHAFQKIRDVYFVNDGPEKHAGVLYGLEI 280

The following BLAST results are available for this feature:
BLAST of Cla011046 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CAF1K_ARATH1.6e-10669.49Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 ... [more]
CAF1I_ARATH1.8e-10568.84Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE... [more]
CAF1G_ARATH6.0e-7754.51Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE... [more]
CAF1F_ARATH3.3e-7553.93Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE... [more]
CAF1J_ARATH8.1e-7454.14Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 ... [more]
BLAST of Cla011046 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYC8_CUCSA4.2e-13082.37Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168920 PE=4 SV=1[more]
A0A061GVA7_THECC1.1e-11773.67Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Theobrom... [more]
A0A0D2NQG1_GOSRA4.1e-11773.21Uncharacterized protein OS=Gossypium raimondii GN=B456_006G114000 PE=4 SV=1[more]
M5WC84_PRUPE1.2e-11674.37Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009650mg PE=4 SV=1[more]
W9RQ69_9ROSA1.3e-11572.95Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016... [more]
BLAST of Cla011046 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443480|ref|XP_004139505.1|6.1e-13082.37PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus][more]
gi|659127315|ref|XP_008463638.1|9.7e-12880.14PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo][more]
gi|645306450|ref|XP_008246147.1|5.3e-11874.73PREDICTED: probable CCR4-associated factor 1 homolog 11 [Prunus mume][more]
gi|590586505|ref|XP_007015724.1|1.6e-11773.67Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma ... [more]
gi|823172477|ref|XP_012485138.1|5.9e-11773.21PREDICTED: probable CCR4-associated factor 1 homolog 9 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
biological_process GO:0017148 negative regulation of translation
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0000932 cytoplasmic mRNA processing body
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU16496watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU16675watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU32361watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU32368watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU49902watermelon EST collection version 2.0transcribed_cluster
WMU58910watermelon EST collection version 2.0transcribed_cluster
WMU76890watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011046Cla011046.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU16675WMU16675transcribed_cluster
WMU49902WMU49902transcribed_cluster
WMU16496WMU16496transcribed_cluster
WMU32361WMU32361transcribed_cluster
WMU32368WMU32368transcribed_cluster
WMU58910WMU58910transcribed_cluster
WMU76890WMU76890transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 18..143
score: 8.9
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 9..276
score: 8.5E
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 15..275
score: 5.84
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 1..278
score: 2.4E
NoneNo IPR availablePANTHERPTHR10797:SF3CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATEDcoord: 1..278
score: 2.4E