CmoCh18G006810 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G006810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Ccr4-associated factor, putative) (3.1.13.4)
LocationCmo_Chr18 : 8669986 .. 8670828 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCTGATCATTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGTACCGATGATAGCCGATTCATTTGGGAGTTTAACTTCATGGATTTCGATCTAGCGCGTGACATCTACGCGCCTGATTCAATCGACCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGTGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAGAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGCGTTCTAAGGGTTTTATTCGGGGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGGGTGTTGTATGGATTGGAGGCGTTCTGA

mRNA sequence

ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCTGATCATTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGTACCGATGATAGCCGATTCATTTGGGAGTTTAACTTCATGGATTTCGATCTAGCGCGTGACATCTACGCGCCTGATTCAATCGACCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGTGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAGAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGCGTTCTAAGGGTTTTATTCGGGGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGGGTGTTGTATGGATTGGAGGCGTTCTGA

Coding sequence (CDS)

ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCTGATCATTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGTACCGATGATAGCCGATTCATTTGGGAGTTTAACTTCATGGATTTCGATCTAGCGCGTGACATCTACGCGCCTGATTCAATCGACCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGTGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAGAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGCGTTCTAAGGGTTTTATTCGGGGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGGGTGTTGTATGGATTGGAGGCGTTCTGA
Homology
[Close]
BLAST of CmoCh18G006810 vs. Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 4.7e-106
Identity = 186/270 (68.89%), Postives = 226/270 (83.70%), Query Frame = 1 

Query: 14  IKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDH-YKL 73
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPG+++ A     + L R + ++ Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKAD---LDVLRRGNPNYLYNL 71

Query: 74  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 133
           LKSNVDAL+LIQ+G+TLSD+DGNLPDLG   +R +IWEFNF DFD+ RD +APDSI+LLR
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 193
           R GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 LDEFLGVLRVLFGDNVYDVKYMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 253
           L EFLG+LR  FGD VYDVK++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           W AFQ+MRD +FV++  EKHAGVLYGLE F
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of CmoCh18G006810 vs. Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 1.2e-104
Identity = 185/270 (68.52%), Postives = 223/270 (82.59%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           ++  REVWA NLESEF+LI ++ID +P +SMDTEFPG++F +     N       D Y L
Sbjct: 16  TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNP-----DDLYTL 75

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 132
           LK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFD+ARD +APDSI+LLR
Sbjct: 76  LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 135

Query: 133 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           RQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 136 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 195

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 252
           L EF  V+RVLFG+ VYDVK+MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLLT
Sbjct: 196 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 255

Query: 253 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           WHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Sbjct: 256 WHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of CmoCh18G006810 vs. Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-79
Identity = 148/265 (55.85%), Postives = 195/265 (73.58%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI+IREVW  NLESE  LIR+++D FP V+MDTEFPGIV      P      ++  HY+ 
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV----CRPVGTFKTNTEYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FDL  DIYA DSI+LLR+
Sbjct: 69  LKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP   
Sbjct: 129 SGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
             F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT  
Sbjct: 189 TGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FF+   +EK++GVLYGL
Sbjct: 249 TFRKLQENFFI-GSMEKYSGVLYGL 266

[Close]
BLAST of CmoCh18G006810 vs. Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.8e-77
Identity = 143/265 (53.96%), Postives = 194/265 (73.21%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI+IREVW  NL+ E  LIRD++D FP V+MDTEFPGIV      P      ++  HY+ 
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T S+  GNLP  GTD    IW+FNF +FDL  DI+A DSI+LL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGTD-KYCIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
            +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FFV   + K++GVLYGL
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGL 265

[Close]
BLAST of CmoCh18G006810 vs. Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.6e-74
Identity = 144/265 (54.34%), Postives = 187/265 (70.57%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI IREVW  NL  EF LIR+++D F  ++MDTEFPG+V   P A F   N  +   Y+ 
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLK-PVATFKYNNDLN---YRT 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK NVD L LIQ+G+T SD +GNLP  GT D   IW+FNF +F++  DIYA +SI+LLR+
Sbjct: 69  LKENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLRQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDF YL+K+LT K LP + 
Sbjct: 129 CGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
            +F  +L V F   VYD+K++M FC  L+GGL+R+A+ + V R VG CHQAGSDSLLT  
Sbjct: 189 ADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLG 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
           +F+K+++ +F     EK+ GVLYGL
Sbjct: 249 SFRKLKERYF-PGSTEKYTGVLYGL 265

[Close]
BLAST of CmoCh18G006810 vs. TrEMBL
Match: A0A0A0LYC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168920 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 3.4e-127
Identity = 222/280 (79.29%), Postives = 248/280 (88.57%), Query Frame = 1 

Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           M+ HDLN NH KSI+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG++F     P +
Sbjct: 1   MLIHDLNTNH-KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKS 60

Query: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
                 S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+ARD
Sbjct: 61  P--NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           ++AP+SI+LLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 LHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180

Query: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILT + LP  L++FLGV+R+ FGDNVYD+KY+MRFC+SLYGGLDRIAK++NVNRAVGKC
Sbjct: 181 KILTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDTFFVQ E+ KHAGVLYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of CmoCh18G006810 vs. TrEMBL
Match: B9MYV0_POPTR (CCR4-NOT transcription complex family protein OS=Populus trichocarpa GN=POPTR_0004s21070g PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 4.6e-116
Identity = 204/273 (74.73%), Postives = 234/273 (85.71%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNR----SSS 71
           K I IREVW+ NLESEF+LIRDLID FP +SMDTEFPG+VF  P  P N  N       S
Sbjct: 5   KEIVIREVWSCNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD++GNLPDLGT + RFIWEFNF DFD+ RD +APDSI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGTGN-RFIWEFNFRDFDVERDSHAPDSI 124

Query: 132 DLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKS 191
           +LLRRQGIDF+RNR EG+DS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT++ 
Sbjct: 125 ELLRRQGIDFERNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRE 184

Query: 192 LPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+ L  FL +LRV FG+N+YDVK+MMRFCKSLYGGLDR+A++L VNR VGKCHQAGSDS
Sbjct: 185 LPSGLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE F
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

[Close]
BLAST of CmoCh18G006810 vs. TrEMBL
Match: W9RQ69_9ROSA (Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016319 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 1.5e-114
Identity = 205/283 (72.44%), Postives = 237/283 (83.75%), Query Frame = 1 

Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAP---TA 60
           M S D N +  K I IREVWASNLE+EF+LI DLID FP +SMDTEFPG+V+ A    + 
Sbjct: 1   MFSEDQNPSR-KPIVIREVWASNLEAEFELIGDLIDRFPYISMDTEFPGVVYRATFDQSK 60

Query: 61  PFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDL 120
           P+ A     SDHY++LKSNVDAL+LIQ+G+TLSD+DGNLPDL   +SRFIWEFNF DFD+
Sbjct: 61  PY-AYRLRPSDHYRVLKSNVDALSLIQVGLTLSDADGNLPDLEGGESRFIWEFNFRDFDV 120

Query: 121 ARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFA 180
           ARD++APDSI+LL+RQGIDFDRNR EGIDS RFAELMMSSGLVCND+VSWVTFHSAYDF 
Sbjct: 121 ARDLHAPDSIELLKRQGIDFDRNRSEGIDSARFAELMMSSGLVCNDAVSWVTFHSAYDFG 180

Query: 181 YLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAV 240
           YL+KILT++ LP  L +FL +LR  FGD VYDVK+MMRFC SLYGGLDR+AK+L VNR V
Sbjct: 181 YLVKILTRRCLPGALADFLKILRAFFGDRVYDVKHMMRFCNSLYGGLDRVAKTLEVNRVV 240

Query: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           GKCHQAGSDSLLTWHAFQK+RD +FV +  EKHAGVLYGLE F
Sbjct: 241 GKCHQAGSDSLLTWHAFQKIRDVYFVTDGPEKHAGVLYGLEVF 281

[Close]
BLAST of CmoCh18G006810 vs. TrEMBL
Match: A0A0D2NQG1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G114000 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 9.5e-114
Identity = 199/270 (73.70%), Postives = 233/270 (86.30%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTA---PTAPFNALNRSSSD 71
           + IKIREVW+ NL+SEF+LI   ID +P +SMDTEFPG+VF     PT P+ A  R S D
Sbjct: 11  RHIKIREVWSHNLDSEFELISQAIDEYPFISMDTEFPGLVFRPKVDPTRPYGAQFRPS-D 70

Query: 72  HYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSID 131
           HYK+LKSNVDALNLIQ+G+TL+DS GNLP LGTDD +FIWEFNF DFD+ RD +APDSI+
Sbjct: 71  HYKVLKSNVDALNLIQVGLTLTDSSGNLPTLGTDDVQFIWEFNFRDFDVDRDAHAPDSIE 130

Query: 132 LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSL 191
           LLRRQGIDF++N+ +GIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT++ L
Sbjct: 131 LLRRQGIDFEKNKEKGIDSLRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRDL 190

Query: 192 PNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSL 251
           P  LDEFL VLRV FG+ VYDVK+MM+FCKSLYGGLDR+A++L+VNRAVGKCHQAGSDSL
Sbjct: 191 PGGLDEFLRVLRVFFGNRVYDVKHMMKFCKSLYGGLDRVARTLDVNRAVGKCHQAGSDSL 250

Query: 252 LTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 279
           LTWHAFQK+RD +FV +  EKHAGVLYGLE
Sbjct: 251 LTWHAFQKIRDVYFVNDGPEKHAGVLYGLE 279

[Close]
BLAST of CmoCh18G006810 vs. TrEMBL
Match: U5G173_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16310g PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 1.2e-113
Identity = 202/271 (74.54%), Postives = 231/271 (85.24%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNR----SSS 71
           K I IREVW+ NLESEF+LI +LI  FP +SMDTEFPG+VF  P  P N  N       S
Sbjct: 5   KEIAIREVWSCNLESEFELISELIVEFPYISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD++GNLPDLGT + RFIWEFNF DFD+ RD +APDSI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGTGN-RFIWEFNFRDFDVERDAHAPDSI 124

Query: 132 DLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKS 191
           +LLRRQGIDF RNR EG+DS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT + 
Sbjct: 125 ELLRRQGIDFGRNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTGRD 184

Query: 192 LPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+ L EFL VLRV FG+ +YDVK+MMRFCKSLYGGLDR+A++L+VNRAVGKCHQAGSDS
Sbjct: 185 LPSGLVEFLRVLRVFFGNKIYDVKHMMRFCKSLYGGLDRVARTLDVNRAVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 279
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLE 274

[Close]
BLAST of CmoCh18G006810 vs. TAIR10
Match: AT5G22250.1 (AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 385.6 bits (989), Expect = 2.7e-107
Identity = 186/270 (68.89%), Postives = 226/270 (83.70%), Query Frame = 1 

Query: 14  IKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDH-YKL 73
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPG+++ A     + L R + ++ Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKAD---LDVLRRGNPNYLYNL 71

Query: 74  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 133
           LKSNVDAL+LIQ+G+TLSD+DGNLPDLG   +R +IWEFNF DFD+ RD +APDSI+LLR
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 193
           R GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 LDEFLGVLRVLFGDNVYDVKYMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 253
           L EFLG+LR  FGD VYDVK++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           W AFQ+MRD +FV++  EKHAGVLYGLE F
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of CmoCh18G006810 vs. TAIR10
Match: AT3G44260.1 (AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 380.9 bits (977), Expect = 6.5e-106
Identity = 185/270 (68.52%), Postives = 223/270 (82.59%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           ++  REVWA NLESEF+LI ++ID +P +SMDTEFPG++F +     N       D Y L
Sbjct: 16  TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNP-----DDLYTL 75

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 132
           LK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFD+ARD +APDSI+LLR
Sbjct: 76  LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 135

Query: 133 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           RQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 136 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 195

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 252
           L EF  V+RVLFG+ VYDVK+MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLLT
Sbjct: 196 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 255

Query: 253 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           WHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Sbjct: 256 WHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of CmoCh18G006810 vs. TAIR10
Match: AT2G32070.1 (AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 297.7 bits (761), Expect = 7.3e-81
Identity = 148/265 (55.85%), Postives = 195/265 (73.58%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI+IREVW  NLESE  LIR+++D FP V+MDTEFPGIV      P      ++  HY+ 
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV----CRPVGTFKTNTEYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FDL  DIYA DSI+LLR+
Sbjct: 69  LKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP   
Sbjct: 129 SGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
             F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT  
Sbjct: 189 TGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FF+   +EK++GVLYGL
Sbjct: 249 TFRKLQENFFI-GSMEKYSGVLYGL 266

[Close]
BLAST of CmoCh18G006810 vs. TAIR10
Match: AT1G80780.3 (AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 288.5 bits (737), Expect = 4.4e-78
Identity = 143/265 (53.96%), Postives = 194/265 (73.21%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI+IREVW  NL+ E  LIRD++D FP V+MDTEFPGIV      P      ++  HY+ 
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T S+  GNLP  GTD    IW+FNF +FDL  DI+A DSI+LL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGTD-KYCIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
            +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FFV   + K++GVLYGL
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGL 265

[Close]
BLAST of CmoCh18G006810 vs. TAIR10
Match: AT5G10960.1 (AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 280.8 bits (717), Expect = 9.2e-76
Identity = 144/265 (54.34%), Postives = 187/265 (70.57%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKL 72
           SI IREVW  NL  EF LIR+++D F  ++MDTEFPG+V   P A F   N  +   Y+ 
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLK-PVATFKYNNDLN---YRT 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK NVD L LIQ+G+T SD +GNLP  GT D   IW+FNF +F++  DIYA +SI+LLR+
Sbjct: 69  LKENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLRQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRL 192
            GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDF YL+K+LT K LP + 
Sbjct: 129 CGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
            +F  +L V F   VYD+K++M FC  L+GGL+R+A+ + V R VG CHQAGSDSLLT  
Sbjct: 189 ADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLG 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
           +F+K+++ +F     EK+ GVLYGL
Sbjct: 249 SFRKLKERYF-PGSTEKYTGVLYGL 265

[Close]
BLAST of CmoCh18G006810 vs. NCBI nr
Match: gi|449443480|ref|XP_004139505.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus])

HSP 1 Score: 462.6 bits (1189), Expect = 4.8e-127
Identity = 222/280 (79.29%), Postives = 248/280 (88.57%), Query Frame = 1 

Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           M+ HDLN NH KSI+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG++F     P +
Sbjct: 1   MLIHDLNTNH-KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKS 60

Query: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
                 S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+ARD
Sbjct: 61  P--NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           ++AP+SI+LLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 LHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180

Query: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILT + LP  L++FLGV+R+ FGDNVYD+KY+MRFC+SLYGGLDRIAK++NVNRAVGKC
Sbjct: 181 KILTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDTFFVQ E+ KHAGVLYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of CmoCh18G006810 vs. NCBI nr
Match: gi|659127315|ref|XP_008463638.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo])

HSP 1 Score: 461.5 bits (1186), Expect = 1.1e-126
Identity = 223/283 (78.80%), Postives = 248/283 (87.63%), Query Frame = 1 

Query: 1   MVSHDLNNNH---YKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTA 60
           M+ HDLN NH   +K I+IREVWASNL+SEF+LI DLID FPCVSMDTEFPG++F   T 
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDL 120
           P        S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+
Sbjct: 61  P--KFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDV 120

Query: 121 ARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFA 180
           ARD +APDSI+LLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF 
Sbjct: 121 ARDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFG 180

Query: 181 YLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAV 240
           YL+KILTQ+ LP  L+EFLGV+RV FGDNVYD+KYMMRFC+SLYGGLDRIAK++NVNRAV
Sbjct: 181 YLVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAV 240

Query: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           GKCHQAGSDSLLTWHAFQKMRDTFFV+NE+ KHAGVLYGLE F
Sbjct: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]
BLAST of CmoCh18G006810 vs. NCBI nr
Match: gi|566167715|ref|XP_006384784.1| (CCR4-NOT transcription complex family protein [Populus trichocarpa])

HSP 1 Score: 425.6 bits (1093), Expect = 6.6e-116
Identity = 204/273 (74.73%), Postives = 234/273 (85.71%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNR----SSS 71
           K I IREVW+ NLESEF+LIRDLID FP +SMDTEFPG+VF  P  P N  N       S
Sbjct: 5   KEIVIREVWSCNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD++GNLPDLGT + RFIWEFNF DFD+ RD +APDSI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGTGN-RFIWEFNFRDFDVERDSHAPDSI 124

Query: 132 DLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKS 191
           +LLRRQGIDF+RNR EG+DS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT++ 
Sbjct: 125 ELLRRQGIDFERNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRE 184

Query: 192 LPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+ L  FL +LRV FG+N+YDVK+MMRFCKSLYGGLDR+A++L VNR VGKCHQAGSDS
Sbjct: 185 LPSGLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE F
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

[Close]
BLAST of CmoCh18G006810 vs. NCBI nr
Match: gi|743796916|ref|XP_011006693.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Populus euphratica])

HSP 1 Score: 425.6 bits (1093), Expect = 6.6e-116
Identity = 203/273 (74.36%), Postives = 235/273 (86.08%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNR----SSS 71
           K I IREVW+ NLESEF+LIRDLID FP +SMDTEFPG+VF  P  P N  N       S
Sbjct: 5   KEIVIREVWSWNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD+ GNLPDLGT++ RFIWEFNF DFD+ RD +APDS+
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAKGNLPDLGTEN-RFIWEFNFRDFDVERDSHAPDSV 124

Query: 132 DLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKS 191
           +LLRRQGIDF+RNR EG+DS +FAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT++ 
Sbjct: 125 ELLRRQGIDFERNREEGVDSAKFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRQE 184

Query: 192 LPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+RL  FL +LRV FG+N+YDVK+MMRFCKSLYGGLDR+A++L VNR VGKCHQAGSDS
Sbjct: 185 LPSRLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE F
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

[Close]
BLAST of CmoCh18G006810 vs. NCBI nr
Match: gi|1009174523|ref|XP_015868387.1| (PREDICTED: probable CCR4-associated factor 1 homolog 9 [Ziziphus jujuba])

HSP 1 Score: 424.9 bits (1091), Expect = 1.1e-115
Identity = 207/270 (76.67%), Postives = 234/270 (86.67%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNR-SSSDHY 71
           K I IREVWA NLE+EFQLIR+LID FP +SMDTEFPG+VF  P      + R   SDHY
Sbjct: 21  KPIAIREVWAHNLEAEFQLIRNLIDDFPFISMDTEFPGLVFRPPPQLDPTMRRLRPSDHY 80

Query: 72  KLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLL 131
            LLKSNVDALNLIQ+G+TLSDS GNLPDLG+ + RFIWEFNF DFD++RD +APDSIDLL
Sbjct: 81  LLLKSNVDALNLIQVGLTLSDSLGNLPDLGSHN-RFIWEFNFSDFDVSRDAHAPDSIDLL 140

Query: 132 RRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPN 191
           RRQGIDFDRNR EGIDS RFAELMMSSGLVCND+VSWVTFHSAYDF YL+KILT++SLP 
Sbjct: 141 RRQGIDFDRNRDEGIDSRRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRRSLPG 200

Query: 192 RLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 251
           R++EFL VLRV FG+ VYD+K+MMRFCKSLYGGLDR+A++L V+RAVGKCHQAGSDSLLT
Sbjct: 201 RMEEFLRVLRVFFGNRVYDIKHMMRFCKSLYGGLDRVARTLEVDRAVGKCHQAGSDSLLT 260

Query: 252 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           WHAFQKMRD +FV +  EKHAGVLYGLE F
Sbjct: 261 WHAFQKMRDVYFVNDGPEKHAGVLYGLEVF 289

The following BLAST results are available for this feature:
BLAST of CmoCh18G006810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CAF1K_ARATH4.7e-10668.89Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 ... [more]
CAF1I_ARATH1.2e-10468.52Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE... [more]
CAF1G_ARATH1.3e-7955.85Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE... [more]
CAF1F_ARATH7.8e-7753.96Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE... [more]
CAF1J_ARATH1.6e-7454.34Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 ... [more]
BLAST of CmoCh18G006810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYC8_CUCSA3.4e-12779.29Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168920 PE=4 SV=1[more]
B9MYV0_POPTR4.6e-11674.73CCR4-NOT transcription complex family protein OS=Populus trichocarpa GN=POPTR_00... [more]
W9RQ69_9ROSA1.5e-11472.44Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016... [more]
A0A0D2NQG1_GOSRA9.5e-11473.70Uncharacterized protein OS=Gossypium raimondii GN=B456_006G114000 PE=4 SV=1[more]
U5G173_POPTR1.2e-11374.54Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16310g PE=4 SV=1[more]
BLAST of CmoCh18G006810 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22250.12.7e-10768.89 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT3G44260.16.5e-10668.52 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT2G32070.17.3e-8155.85 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G80780.34.4e-7853.96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT5G10960.19.2e-7654.34 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CmoCh18G006810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443480|ref|XP_004139505.1|4.8e-12779.29PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus][more]
gi|659127315|ref|XP_008463638.1|1.1e-12678.80PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo][more]
gi|566167715|ref|XP_006384784.1|6.6e-11674.73CCR4-NOT transcription complex family protein [Populus trichocarpa][more]
gi|743796916|ref|XP_011006693.1|6.6e-11674.36PREDICTED: probable CCR4-associated factor 1 homolog 11 [Populus euphratica][more]
gi|1009174523|ref|XP_015868387.1|1.1e-11576.67PREDICTED: probable CCR4-associated factor 1 homolog 9 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0008152 metabolic process
biological_process GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
biological_process GO:0017148 negative regulation of translation
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0000932 cytoplasmic mRNA processing body
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G006810.1CmoCh18G006810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 168..250
score: 2.7E-7coord: 19..146
score: 9.5
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 6..278
score: 2.9E
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 16..277
score: 1.04
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 1..280
score: 1.8E
NoneNo IPR availablePANTHERPTHR10797:SF3CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATEDcoord: 1..280
score: 1.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh18G006810Cucsa.319630Cucumber (Gy14) v1cgycmoB0883
CmoCh18G006810CmaCh18G006400Cucurbita maxima (Rimu)cmacmoB410
CmoCh18G006810Cla011046Watermelon (97103) v1cmowmB376
CmoCh18G006810Csa1G168920Cucumber (Chinese Long) v2cmocuB383
CmoCh18G006810ClCG01G011640Watermelon (Charleston Gray)cmowcgB346
CmoCh18G006810CSPI01G15070Wild cucumber (PI 183967)cmocpiB386
CmoCh18G006810Cp4.1LG09g05460Cucurbita pepo (Zucchini)cmocpeB374
CmoCh18G006810MELO3C025580.2Melon (DHL92) v3.6.1cmomedB400
CmoCh18G006810CsaV3_1G015170Cucumber (Chinese Long) v3cmocucB0460
CmoCh18G006810Cla97C01G011260Watermelon (97103) v2cmowmbB386
CmoCh18G006810CsGy1G014850Cucumber (Gy14) v2cgybcmoB085
CmoCh18G006810Carg26259Silver-seed gourdcarcmoB0000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None