CmaCh18G006400 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G006400
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCcr4-associated factor, putative
LocationCma_Chr18 : 5839666 .. 5840508 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACTCTCTAAATCGCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGCACCGATGATAGCCGATTCATTTGGGAGTTCAACTTCATGGACTTCGATCTGGCGCGTGACATCTACGCGCCTGATTCCATCGATCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCATGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTACGACTTCGCGTATTTGATTAAGATTCTGACTCAAAAGAGGCTTCCTAATCGGGTGGATGAATTCCTCGGCGTTCTAAGGGTTTTGTTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGTGGGTTGGACCGGATAGCCAAGAGTTTGAATGTGAACCGGGCGGTCGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGCGTCTTGTATGGATTGGAGGCGTTCTGA

mRNA sequence

ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACTCTCTAAATCGCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGCACCGATGATAGCCGATTCATTTGGGAGTTCAACTTCATGGACTTCGATCTGGCGCGTGACATCTACGCGCCTGATTCCATCGATCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCATGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTACGACTTCGCGTATTTGATTAAGATTCTGACTCAAAAGAGGCTTCCTAATCGGGTGGATGAATTCCTCGGCGTTCTAAGGGTTTTGTTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGTGGGTTGGACCGGATAGCCAAGAGTTTGAATGTGAACCGGGCGGTCGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGCGTCTTGTATGGATTGGAGGCGTTCTGA

Coding sequence (CDS)

ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACTCTCTAAATCGCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGCACCGATGATAGCCGATTCATTTGGGAGTTCAACTTCATGGACTTCGATCTGGCGCGTGACATCTACGCGCCTGATTCCATCGATCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCATGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTACGACTTCGCGTATTTGATTAAGATTCTGACTCAAAAGAGGCTTCCTAATCGGGTGGATGAATTCCTCGGCGTTCTAAGGGTTTTGTTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGTGGGTTGGACCGGATAGCCAAGAGTTTGAATGTGAACCGGGCGGTCGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGCGTCTTGTATGGATTGGAGGCGTTCTGA

Protein sequence

MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Homology
[Close]
BLAST of CmaCh18G006400 vs. Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.4e-105
Identity = 185/270 (68.52%), Postives = 227/270 (84.07%), Query Frame = 1 

Query: 14  IKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNRSSSDH-YKL 73
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPG+++ A     + L R + ++ Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKAD---LDVLRRGNPNYLYNL 71

Query: 74  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 133
           LKSNVDAL+LIQ+G+TLSD+DGNLPDLG   +R +IWEFNF DFD+ RD +APDSI+LLR
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPNR 193
           R GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT+++LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 VDEFLGVLRVLFGDNVYDVKYMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 253
           + EFLG+LR  FGD VYDVK++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           W AFQ+MRD +FV++  EKHAGVLYGLE F
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of CmaCh18G006400 vs. Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.6e-104
Identity = 184/270 (68.15%), Postives = 223/270 (82.59%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNRSSSDHYKL 72
           ++  REVWA NLESEF+LI ++ID +P +SMDTEFPG++F +     N       D Y L
Sbjct: 16  TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNP-----DDLYTL 75

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 132
           LK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFD+ARD +APDSI+LLR
Sbjct: 76  LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 135

Query: 133 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPNR 192
           RQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 136 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 195

Query: 193 VDEFLGVLRVLFGDNVYDVKYMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 252
           + EF  V+RVLFG+ VYDVK+MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLLT
Sbjct: 196 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 255

Query: 253 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           WHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Sbjct: 256 WHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of CmaCh18G006400 vs. Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-79
Identity = 148/265 (55.85%), Postives = 195/265 (73.58%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNRSSSDHYKL 72
           SI+IREVW  NLESE  LIR+++D FP V+MDTEFPGIV      P  +   ++  HY+ 
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV----CRPVGTFKTNTEYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FDL  DIYA DSI+LLR+
Sbjct: 69  LKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPNRV 192
            GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT + LP   
Sbjct: 129 SGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
             F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT  
Sbjct: 189 TGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FF+   +EK++GVLYGL
Sbjct: 249 TFRKLQENFFI-GSMEKYSGVLYGL 266

[Close]
BLAST of CmaCh18G006400 vs. Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.0e-76
Identity = 143/265 (53.96%), Postives = 194/265 (73.21%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNRSSSDHYKL 72
           SI+IREVW  NL+ E  LIRD++D FP V+MDTEFPGIV      P  +   ++  HY+ 
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T S+  GNLP  GTD    IW+FNF +FDL  DI+A DSI+LL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGTD-KYCIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPNRV 192
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT + LP+  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
            +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FFV   + K++GVLYGL
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGL 265

[Close]
BLAST of CmaCh18G006400 vs. Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.6e-74
Identity = 146/268 (54.48%), Postives = 188/268 (70.15%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPF---NSLNRSSSDH 72
           SI IREVW  NL  EF LIR+++D F  ++MDTEFPG+V   P A F   N LN      
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLK-PVATFKYNNDLN------ 68

Query: 73  YKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDL 132
           Y+ LK NVD L LIQ+G+T SD +GNLP  GT D   IW+FNF +F++  DIYA +SI+L
Sbjct: 69  YRTLKENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIEL 128

Query: 133 LRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLP 192
           LR+ GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDF YL+K+LT K LP
Sbjct: 129 LRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELP 188

Query: 193 NRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLL 252
            +  +F  +L V F   VYD+K++M FC  L+GGL+R+A+ + V R VG CHQAGSDSLL
Sbjct: 189 LKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLL 248

Query: 253 TWHAFQKMRDTFFVQNEVEKHAGVLYGL 278
           T  +F+K+++ +F     EK+ GVLYGL
Sbjct: 249 TLGSFRKLKERYF-PGSTEKYTGVLYGL 265

[Close]
BLAST of CmaCh18G006400 vs. TrEMBL
Match: A0A0A0LYC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168920 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 4.4e-127
Identity = 221/280 (78.93%), Postives = 249/280 (88.93%), Query Frame = 1 

Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           M+ HDLN NH KSI+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG++F     P +
Sbjct: 1   MLIHDLNTNH-KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKS 60

Query: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
                 S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+ARD
Sbjct: 61  P--NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           ++AP+SI+LLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 LHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180

Query: 181 KILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILT ++LP  +++FLGV+R+ FGDNVYD+KY+MRFC+SLYGGLDRIAK++NVNRAVGKC
Sbjct: 181 KILTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDTFFVQ E+ KHAGVLYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of CmaCh18G006400 vs. TrEMBL
Match: B9MYV0_POPTR (CCR4-NOT transcription complex family protein OS=Populus trichocarpa GN=POPTR_0004s21070g PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 4.6e-116
Identity = 203/273 (74.36%), Postives = 235/273 (86.08%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNR----SSS 71
           K I IREVW+ NLESEF+LIRDLID FP +SMDTEFPG+VF  P  P N+ N       S
Sbjct: 5   KEIVIREVWSCNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD++GNLPDLGT + RFIWEFNF DFD+ RD +APDSI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGTGN-RFIWEFNFRDFDVERDSHAPDSI 124

Query: 132 DLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKR 191
           +LLRRQGIDF+RNR EG+DS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT++ 
Sbjct: 125 ELLRRQGIDFERNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRE 184

Query: 192 LPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+ +  FL +LRV FG+N+YDVK+MMRFCKSLYGGLDR+A++L VNR VGKCHQAGSDS
Sbjct: 185 LPSGLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE F
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

[Close]
BLAST of CmaCh18G006400 vs. TrEMBL
Match: W9RQ69_9ROSA (Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016319 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 1.2e-113
Identity = 203/283 (71.73%), Postives = 237/283 (83.75%), Query Frame = 1 

Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAP---TA 60
           M S D N +  K I IREVWASNLE+EF+LI DLID FP +SMDTEFPG+V+ A    + 
Sbjct: 1   MFSEDQNPSR-KPIVIREVWASNLEAEFELIGDLIDRFPYISMDTEFPGVVYRATFDQSK 60

Query: 61  PFNSLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDL 120
           P+ +     SDHY++LKSNVDAL+LIQ+G+TLSD+DGNLPDL   +SRFIWEFNF DFD+
Sbjct: 61  PY-AYRLRPSDHYRVLKSNVDALSLIQVGLTLSDADGNLPDLEGGESRFIWEFNFRDFDV 120

Query: 121 ARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFA 180
           ARD++APDSI+LL+RQGIDFDRNR EGIDS RFAELMMSSGLVCND+VSWVTFHSAYDF 
Sbjct: 121 ARDLHAPDSIELLKRQGIDFDRNRSEGIDSARFAELMMSSGLVCNDAVSWVTFHSAYDFG 180

Query: 181 YLIKILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAV 240
           YL+KILT++ LP  + +FL +LR  FGD VYDVK+MMRFC SLYGGLDR+AK+L VNR V
Sbjct: 181 YLVKILTRRCLPGALADFLKILRAFFGDRVYDVKHMMRFCNSLYGGLDRVAKTLEVNRVV 240

Query: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           GKCHQAGSDSLLTWHAFQK+RD +FV +  EKHAGVLYGLE F
Sbjct: 241 GKCHQAGSDSLLTWHAFQKIRDVYFVTDGPEKHAGVLYGLEVF 281

[Close]
BLAST of CmaCh18G006400 vs. TrEMBL
Match: U5G173_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16310g PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 2.1e-113
Identity = 201/271 (74.17%), Postives = 232/271 (85.61%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNR----SSS 71
           K I IREVW+ NLESEF+LI +LI  FP +SMDTEFPG+VF  P  P N+ N       S
Sbjct: 5   KEIAIREVWSCNLESEFELISELIVEFPYISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD++GNLPDLGT + RFIWEFNF DFD+ RD +APDSI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGTGN-RFIWEFNFRDFDVERDAHAPDSI 124

Query: 132 DLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKR 191
           +LLRRQGIDF RNR EG+DS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT + 
Sbjct: 125 ELLRRQGIDFGRNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTGRD 184

Query: 192 LPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+ + EFL VLRV FG+ +YDVK+MMRFCKSLYGGLDR+A++L+VNRAVGKCHQAGSDS
Sbjct: 185 LPSGLVEFLRVLRVFFGNKIYDVKHMMRFCKSLYGGLDRVARTLDVNRAVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 279
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLE 274

[Close]
BLAST of CmaCh18G006400 vs. TrEMBL
Match: A0A067JTU3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20215 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 4.7e-113
Identity = 198/268 (73.88%), Postives = 230/268 (85.82%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSL--NRSSSDHY 72
           +I IREVW+SNLESEF+LIR+L+D FP +SMDTEFPG+VF     P  S    R  SDHY
Sbjct: 7   NIVIREVWSSNLESEFELIRELVDDFPFISMDTEFPGLVFRPSVDPTKSYFRQRRPSDHY 66

Query: 73  KLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLL 132
           K+LKSNVDALNLIQ+G+TLSDS+GNLP LGT D RFIWEFNF DFD++RD +APDSI+LL
Sbjct: 67  KILKSNVDALNLIQVGLTLSDSNGNLPHLGTSD-RFIWEFNFRDFDVSRDAHAPDSIELL 126

Query: 133 RRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPN 192
           RRQGIDF+RNR EG+DS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+KILT + LP 
Sbjct: 127 RRQGIDFERNREEGVDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTSRCLPA 186

Query: 193 RVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 252
            +++FL ++RV FG  VYD+K++MRFC SLYGGLDR+A++L VNRAVGKCHQAGSDSLLT
Sbjct: 187 CLEDFLRLMRVFFGSRVYDIKHLMRFCNSLYGGLDRVARTLEVNRAVGKCHQAGSDSLLT 246

Query: 253 WHAFQKMRDTFFVQNEVEKHAGVLYGLE 279
           WHAFQKMRD +FV +  EKHAGVLYGLE
Sbjct: 247 WHAFQKMRDVYFVNDGPEKHAGVLYGLE 273

[Close]
BLAST of CmaCh18G006400 vs. TAIR10
Match: AT5G22250.1 (AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 384.0 bits (985), Expect = 7.7e-107
Identity = 185/270 (68.52%), Postives = 227/270 (84.07%), Query Frame = 1 

Query: 14  IKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNRSSSDH-YKL 73
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPG+++ A     + L R + ++ Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKAD---LDVLRRGNPNYLYNL 71

Query: 74  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 133
           LKSNVDAL+LIQ+G+TLSD+DGNLPDLG   +R +IWEFNF DFD+ RD +APDSI+LLR
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPNR 193
           R GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT+++LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 VDEFLGVLRVLFGDNVYDVKYMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 253
           + EFLG+LR  FGD VYDVK++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           W AFQ+MRD +FV++  EKHAGVLYGLE F
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of CmaCh18G006400 vs. TAIR10
Match: AT3G44260.1 (AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 379.8 bits (974), Expect = 1.5e-105
Identity = 184/270 (68.15%), Postives = 223/270 (82.59%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNRSSSDHYKL 72
           ++  REVWA NLESEF+LI ++ID +P +SMDTEFPG++F +     N       D Y L
Sbjct: 16  TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNP-----DDLYTL 75

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 132
           LK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFD+ARD +APDSI+LLR
Sbjct: 76  LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 135

Query: 133 RQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPNR 192
           RQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 136 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 195

Query: 193 VDEFLGVLRVLFGDNVYDVKYMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 252
           + EF  V+RVLFG+ VYDVK+MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLLT
Sbjct: 196 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 255

Query: 253 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           WHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Sbjct: 256 WHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of CmaCh18G006400 vs. TAIR10
Match: AT2G32070.1 (AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 297.7 bits (761), Expect = 7.3e-81
Identity = 148/265 (55.85%), Postives = 195/265 (73.58%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNRSSSDHYKL 72
           SI+IREVW  NLESE  LIR+++D FP V+MDTEFPGIV      P  +   ++  HY+ 
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV----CRPVGTFKTNTEYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FDL  DIYA DSI+LLR+
Sbjct: 69  LKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPNRV 192
            GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT + LP   
Sbjct: 129 SGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
             F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT  
Sbjct: 189 TGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FF+   +EK++GVLYGL
Sbjct: 249 TFRKLQENFFI-GSMEKYSGVLYGL 266

[Close]
BLAST of CmaCh18G006400 vs. TAIR10
Match: AT1G80780.3 (AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 288.1 bits (736), Expect = 5.8e-78
Identity = 143/265 (53.96%), Postives = 194/265 (73.21%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNRSSSDHYKL 72
           SI+IREVW  NL+ E  LIRD++D FP V+MDTEFPGIV      P  +   ++  HY+ 
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 73  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRR 132
           LK+NV+ L +IQ+G+T S+  GNLP  GTD    IW+FNF +FDL  DI+A DSI+LL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGTD-KYCIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 133 QGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPNRV 192
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT + LP+  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 193 DEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWH 252
            +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 253 AFQKMRDTFFVQNEVEKHAGVLYGL 278
            F+K+++ FFV   + K++GVLYGL
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGL 265

[Close]
BLAST of CmaCh18G006400 vs. TAIR10
Match: AT5G10960.1 (AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 280.8 bits (717), Expect = 9.2e-76
Identity = 146/268 (54.48%), Postives = 188/268 (70.15%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPF---NSLNRSSSDH 72
           SI IREVW  NL  EF LIR+++D F  ++MDTEFPG+V   P A F   N LN      
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLK-PVATFKYNNDLN------ 68

Query: 73  YKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDL 132
           Y+ LK NVD L LIQ+G+T SD +GNLP  GT D   IW+FNF +F++  DIYA +SI+L
Sbjct: 69  YRTLKENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIEL 128

Query: 133 LRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLP 192
           LR+ GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDF YL+K+LT K LP
Sbjct: 129 LRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELP 188

Query: 193 NRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLL 252
            +  +F  +L V F   VYD+K++M FC  L+GGL+R+A+ + V R VG CHQAGSDSLL
Sbjct: 189 LKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLL 248

Query: 253 TWHAFQKMRDTFFVQNEVEKHAGVLYGL 278
           T  +F+K+++ +F     EK+ GVLYGL
Sbjct: 249 TLGSFRKLKERYF-PGSTEKYTGVLYGL 265

[Close]
BLAST of CmaCh18G006400 vs. NCBI nr
Match: gi|449443480|ref|XP_004139505.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus])

HSP 1 Score: 462.2 bits (1188), Expect = 6.3e-127
Identity = 221/280 (78.93%), Postives = 249/280 (88.93%), Query Frame = 1 

Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           M+ HDLN NH KSI+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG++F     P +
Sbjct: 1   MLIHDLNTNH-KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKS 60

Query: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120
                 S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+ARD
Sbjct: 61  P--NHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARD 120

Query: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180
           ++AP+SI+LLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 LHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180

Query: 181 KILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240
           KILT ++LP  +++FLGV+R+ FGDNVYD+KY+MRFC+SLYGGLDRIAK++NVNRAVGKC
Sbjct: 181 KILTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           HQAGSDSLLTWHAFQKMRDTFFVQ E+ KHAGVLYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of CmaCh18G006400 vs. NCBI nr
Match: gi|659127315|ref|XP_008463638.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo])

HSP 1 Score: 461.5 bits (1186), Expect = 1.1e-126
Identity = 222/283 (78.45%), Postives = 249/283 (87.99%), Query Frame = 1 

Query: 1   MVSHDLNNNH---YKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTA 60
           M+ HDLN NH   +K I+IREVWASNL+SEF+LI DLID FPCVSMDTEFPG++F   T 
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PFNSLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDL 120
           P        S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+
Sbjct: 61  P--KFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDV 120

Query: 121 ARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFA 180
           ARD +APDSI+LLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF 
Sbjct: 121 ARDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFG 180

Query: 181 YLIKILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAV 240
           YL+KILTQ++LP  ++EFLGV+RV FGDNVYD+KYMMRFC+SLYGGLDRIAK++NVNRAV
Sbjct: 181 YLVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAV 240

Query: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           GKCHQAGSDSLLTWHAFQKMRDTFFV+NE+ KHAGVLYGLE F
Sbjct: 241 GKCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]
BLAST of CmaCh18G006400 vs. NCBI nr
Match: gi|566167715|ref|XP_006384784.1| (CCR4-NOT transcription complex family protein [Populus trichocarpa])

HSP 1 Score: 425.6 bits (1093), Expect = 6.6e-116
Identity = 203/273 (74.36%), Postives = 235/273 (86.08%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNR----SSS 71
           K I IREVW+ NLESEF+LIRDLID FP +SMDTEFPG+VF  P  P N+ N       S
Sbjct: 5   KEIVIREVWSCNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD++GNLPDLGT + RFIWEFNF DFD+ RD +APDSI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGTGN-RFIWEFNFRDFDVERDSHAPDSI 124

Query: 132 DLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKR 191
           +LLRRQGIDF+RNR EG+DS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT++ 
Sbjct: 125 ELLRRQGIDFERNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRE 184

Query: 192 LPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+ +  FL +LRV FG+N+YDVK+MMRFCKSLYGGLDR+A++L VNR VGKCHQAGSDS
Sbjct: 185 LPSGLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE F
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

[Close]
BLAST of CmaCh18G006400 vs. NCBI nr
Match: gi|743796916|ref|XP_011006693.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Populus euphratica])

HSP 1 Score: 425.6 bits (1093), Expect = 6.6e-116
Identity = 202/273 (73.99%), Postives = 236/273 (86.45%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNR----SSS 71
           K I IREVW+ NLESEF+LIRDLID FP +SMDTEFPG+VF  P  P N+ N       S
Sbjct: 5   KEIVIREVWSWNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD+ GNLPDLGT++ RFIWEFNF DFD+ RD +APDS+
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAKGNLPDLGTEN-RFIWEFNFRDFDVERDSHAPDSV 124

Query: 132 DLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKR 191
           +LLRRQGIDF+RNR EG+DS +FAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT++ 
Sbjct: 125 ELLRRQGIDFERNREEGVDSAKFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRQE 184

Query: 192 LPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+R+  FL +LRV FG+N+YDVK+MMRFCKSLYGGLDR+A++L VNR VGKCHQAGSDS
Sbjct: 185 LPSRLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE F
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

[Close]
BLAST of CmaCh18G006400 vs. NCBI nr
Match: gi|1009174523|ref|XP_015868387.1| (PREDICTED: probable CCR4-associated factor 1 homolog 9 [Ziziphus jujuba])

HSP 1 Score: 422.9 bits (1086), Expect = 4.3e-115
Identity = 206/270 (76.30%), Postives = 234/270 (86.67%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNSLNR-SSSDHY 71
           K I IREVWA NLE+EFQLIR+LID FP +SMDTEFPG+VF  P     ++ R   SDHY
Sbjct: 21  KPIAIREVWAHNLEAEFQLIRNLIDDFPFISMDTEFPGLVFRPPPQLDPTMRRLRPSDHY 80

Query: 72  KLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLL 131
            LLKSNVDALNLIQ+G+TLSDS GNLPDLG+ + RFIWEFNF DFD++RD +APDSIDLL
Sbjct: 81  LLLKSNVDALNLIQVGLTLSDSLGNLPDLGSHN-RFIWEFNFSDFDVSRDAHAPDSIDLL 140

Query: 132 RRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKRLPN 191
           RRQGIDFDRNR EGIDS RFAELMMSSGLVCND+VSWVTFHSAYDF YL+KILT++ LP 
Sbjct: 141 RRQGIDFDRNRDEGIDSRRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRRSLPG 200

Query: 192 RVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 251
           R++EFL VLRV FG+ VYD+K+MMRFCKSLYGGLDR+A++L V+RAVGKCHQAGSDSLLT
Sbjct: 201 RMEEFLRVLRVFFGNRVYDIKHMMRFCKSLYGGLDRVARTLEVDRAVGKCHQAGSDSLLT 260

Query: 252 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281
           WHAFQKMRD +FV +  EKHAGVLYGLE F
Sbjct: 261 WHAFQKMRDVYFVNDGPEKHAGVLYGLEVF 289

The following BLAST results are available for this feature:
BLAST of CmaCh18G006400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CAF1K_ARATH1.4e-10568.52Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 ... [more]
CAF1I_ARATH2.6e-10468.15Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE... [more]
CAF1G_ARATH1.3e-7955.85Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE... [more]
CAF1F_ARATH1.0e-7653.96Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE... [more]
CAF1J_ARATH1.6e-7454.48Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 ... [more]
BLAST of CmaCh18G006400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYC8_CUCSA4.4e-12778.93Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168920 PE=4 SV=1[more]
B9MYV0_POPTR4.6e-11674.36CCR4-NOT transcription complex family protein OS=Populus trichocarpa GN=POPTR_00... [more]
W9RQ69_9ROSA1.2e-11371.73Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016... [more]
U5G173_POPTR2.1e-11374.17Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16310g PE=4 SV=1[more]
A0A067JTU3_JATCU4.7e-11373.88Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20215 PE=4 SV=1[more]
BLAST of CmaCh18G006400 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22250.17.7e-10768.52 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT3G44260.11.5e-10568.15 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT2G32070.17.3e-8155.85 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G80780.35.8e-7853.96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT5G10960.19.2e-7654.48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CmaCh18G006400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443480|ref|XP_004139505.1|6.3e-12778.93PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus][more]
gi|659127315|ref|XP_008463638.1|1.1e-12678.45PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo][more]
gi|566167715|ref|XP_006384784.1|6.6e-11674.36CCR4-NOT transcription complex family protein [Populus trichocarpa][more]
gi|743796916|ref|XP_011006693.1|6.6e-11673.99PREDICTED: probable CCR4-associated factor 1 homolog 11 [Populus euphratica][more]
gi|1009174523|ref|XP_015868387.1|4.3e-11576.30PREDICTED: probable CCR4-associated factor 1 homolog 9 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0008152 metabolic process
biological_process GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
biological_process GO:0017148 negative regulation of translation
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0000932 cytoplasmic mRNA processing body
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G006400.1CmaCh18G006400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 168..250
score: 3.9E-7coord: 19..146
score: 4.8
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 6..278
score: 2.8E
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 16..277
score: 4.9
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 1..280
score: 1.8E
NoneNo IPR availablePANTHERPTHR10797:SF3CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATEDcoord: 1..280
score: 1.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh18G006400Cucsa.319630Cucumber (Gy14) v1cgycmaB0884
CmaCh18G006400Cla011046Watermelon (97103) v1cmawmB386
CmaCh18G006400Csa1G168920Cucumber (Chinese Long) v2cmacuB399
CmaCh18G006400ClCG01G011640Watermelon (Charleston Gray)cmawcgB341
CmaCh18G006400CSPI01G15070Wild cucumber (PI 183967)cmacpiB403
CmaCh18G006400CmoCh18G006810Cucurbita moschata (Rifu)cmacmoB410
CmaCh18G006400Cp4.1LG09g05460Cucurbita pepo (Zucchini)cmacpeB415
CmaCh18G006400MELO3C025580.2Melon (DHL92) v3.6.1cmamedB425
CmaCh18G006400CsaV3_1G015170Cucumber (Chinese Long) v3cmacucB0476
CmaCh18G006400Cla97C02G048450Watermelon (97103) v2cmawmbB412
CmaCh18G006400Cla97C01G011260Watermelon (97103) v2cmawmbB394
CmaCh18G006400CsGy1G014850Cucumber (Gy14) v2cgybcmaB095
CmaCh18G006400Carg26259Silver-seed gourdcarcmaB0000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G006400Cucurbita maxima (Rimu)cmacmaB211
CmaCh18G006400Cucurbita maxima (Rimu)cmacmaB214
CmaCh18G006400Cucurbita maxima (Rimu)cmacmaB216
CmaCh18G006400Cucurbita moschata (Rifu)cmacmoB398
CmaCh18G006400Cucurbita moschata (Rifu)cmacmoB395
CmaCh18G006400Melon (DHL92) v3.5.1cmameB367
CmaCh18G006400Melon (DHL92) v3.5.1cmameB369
CmaCh18G006400Watermelon (97103) v1cmawmB383
CmaCh18G006400Cucurbita pepo (Zucchini)cmacpeB413
CmaCh18G006400Cucurbita pepo (Zucchini)cmacpeB418
CmaCh18G006400Cucumber (Gy14) v2cgybcmaB092
CmaCh18G006400Cucumber (Chinese Long) v3cmacucB0468
CmaCh18G006400Cucumber (Chinese Long) v3cmacucB0473