Cp4.1LG09g05460 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g05460
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCCR4-NOT transcription complex family protein
LocationCp4.1LG09 : 4767914 .. 4768759 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTAGGCACCGATGATAGTCGATTCATTTGGGAGTTCAACTTCATGGATTTCGATCTAGCGCGTGACATATACGCGCCTGATTCCATCGATCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGCGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAAAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGGGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTGTTGTATGGATTGGAGGCATTCTGA

mRNA sequence

ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTAGGCACCGATGATAGTCGATTCATTTGGGAGTTCAACTTCATGGATTTCGATCTAGCGCGTGACATATACGCGCCTGATTCCATCGATCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGCGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAAAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGGGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTGTTGTATGGATTGGAGGCATTCTGA

Coding sequence (CDS)

ATGGTTAGCCACGATCTCAACAACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTTGATCGATCACTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCCTCTGATCACTACAAACTCCTCAAATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTAGGCACCGATGATAGTCGATTCATTTGGGAGTTCAACTTCATGGATTTCGATCTAGCGCGTGACATATACGCGCCTGATTCCATCGATCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTCGCGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGACTCAAAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGGGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTGTACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAGTGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTGTTGTATGGATTGGAGGCATTCTGA

Protein sequence

MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Homology
[Close]
BLAST of Cp4.1LG09g05460 vs. Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 7.3e-107
Identity = 186/270 (68.89%), Postives = 225/270 (83.33%), Query Frame = 1 

Query: 14  IKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYKL 73
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPG+++ A     + L R + +  Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKAD---LDVLRRGNPNYLYNL 71

Query: 74  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 133
           LKSNVDAL+LIQ+G+TLSD+DGNLPDLG   +R +IWEFNF DFD+ RD +APDSI+LLR
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 193
           R GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 LDEFLGVLRVLFGDNVYDVKYMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 253
           L EFLG+LR  FGD VYDVK++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           W AFQ+MRD +FV++  EKHAGVLYGLE F
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of Cp4.1LG09g05460 vs. Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.8e-105
Identity = 185/271 (68.27%), Postives = 225/271 (83.03%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           ++  REVWA NLESEF+LI ++ID +P +SMDTEFPG++F +       L  ++  D Y 
Sbjct: 16  TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSD------LRFTNPDDLYT 75

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLL 132
           LLK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFD+ARD +APDSI+LL
Sbjct: 76  LLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELL 135

Query: 133 RRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPN 192
           RRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP 
Sbjct: 136 RRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPG 195

Query: 193 RLDEFLGVLRVLFGDNVYDVKYMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLL 252
            L EF  V+RVLFG+ VYDVK+MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLL
Sbjct: 196 ALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLL 255

Query: 253 TWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           TWHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Sbjct: 256 TWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of Cp4.1LG09g05460 vs. Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 298.5 bits (763), Expect = 7.6e-80
Identity = 149/266 (56.02%), Postives = 199/266 (74.81%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI+IREVW  NLESE  LIR+++D FP V+MDTEFPGIV   P   F    ++++  HY+
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTF----KTNTEYHYE 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FDL  DIYA DSI+LLR
Sbjct: 69  TLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLR 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GIDF +N   GIDS+RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP  
Sbjct: 129 QSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPET 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
              F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT 
Sbjct: 189 QTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTS 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
             F+K+++ FF+   +EK++GVLYGL
Sbjct: 249 CTFRKLQENFFI-GSMEKYSGVLYGL 266

[Close]
BLAST of Cp4.1LG09g05460 vs. Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.7e-77
Identity = 145/266 (54.51%), Postives = 198/266 (74.44%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI+IREVW  NL+ E  LIRD++D FP V+MDTEFPGIV   P   F    +S++  HY+
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV-VRPVGTF----KSNADYHYE 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK+NV+ L +IQ+G+T S+  GNLP  GTD    IW+FNF +FDL  DI+A DSI+LL+
Sbjct: 69  TLKTNVNILKMIQLGLTFSNEQGNLPTCGTD-KYCIWQFNFREFDLDSDIFALDSIELLK 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GID  +N ++GIDS+RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+ 
Sbjct: 129 QSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDS 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
             +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT 
Sbjct: 189 QTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTS 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
             F+K+++ FFV   + K++GVLYGL
Sbjct: 249 CTFRKLKENFFV-GPLHKYSGVLYGL 265

[Close]
BLAST of Cp4.1LG09g05460 vs. Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 4.8e-74
Identity = 143/266 (53.76%), Postives = 189/266 (71.05%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI IREVW  NL  EF LIR+++D F  ++MDTEFPG+V   P A F    + ++  +Y+
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLK-PVATF----KYNNDLNYR 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK NVD L LIQ+G+T SD +GNLP  GTD    IW+FNF +F++  DIYA +SI+LLR
Sbjct: 69  TLKENVDLLKLIQVGLTFSDENGNLPTCGTDKF-CIWQFNFREFNIGEDIYASESIELLR 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDF YL+K+LT K LP +
Sbjct: 129 QCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLK 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
             +F  +L V F   VYD+K++M FC  L+GGL+R+A+ + V R VG CHQAGSDSLLT 
Sbjct: 189 QADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTL 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
            +F+K+++ +F     EK+ GVLYGL
Sbjct: 249 GSFRKLKERYF-PGSTEKYTGVLYGL 265

[Close]
BLAST of Cp4.1LG09g05460 vs. TrEMBL
Match: A0A0A0LYC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168920 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 4.4e-127
Identity = 222/281 (79.00%), Postives = 249/281 (88.61%), Query Frame = 1 

Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           M+ HDLN NH KSI+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG++F     P  
Sbjct: 1   MLIHDLNTNH-KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIP-- 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
             + +  S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+AR
Sbjct: 61  -KSPNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           D++AP+SI+LLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL
Sbjct: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           +KILT + LP  L++FLGV+R+ FGDNVYD+KY+MRFC+SLYGGLDRIAK++NVNRAVGK
Sbjct: 181 VKILTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           CHQAGSDSLLTWHAFQKMRDTFFVQ E+ KHAGVLYGLE F
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of Cp4.1LG09g05460 vs. TrEMBL
Match: B9MYV0_POPTR (CCR4-NOT transcription complex family protein OS=Populus trichocarpa GN=POPTR_0004s21070g PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 4.6e-116
Identity = 204/273 (74.73%), Postives = 235/273 (86.08%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALN---RSSSS 71
           K I IREVW+ NLESEF+LIRDLID FP +SMDTEFPG+VF  P  P N  N   +   S
Sbjct: 5   KEIVIREVWSCNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD++GNLPDLGT  +RFIWEFNF DFD+ RD +APDSI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGT-GNRFIWEFNFRDFDVERDSHAPDSI 124

Query: 132 DLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKS 191
           +LLRRQGIDF+RNR EG+DS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT++ 
Sbjct: 125 ELLRRQGIDFERNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRE 184

Query: 192 LPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+ L  FL +LRV FG+N+YDVK+MMRFCKSLYGGLDR+A++L VNR VGKCHQAGSDS
Sbjct: 185 LPSGLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE F
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

[Close]
BLAST of Cp4.1LG09g05460 vs. TrEMBL
Match: W9RQ69_9ROSA (Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016319 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 4.3e-114
Identity = 205/284 (72.18%), Postives = 237/284 (83.45%), Query Frame = 1 

Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAP---TA 60
           M S D N +  K I IREVWASNLE+EF+LI DLID FP +SMDTEFPG+V+ A    + 
Sbjct: 1   MFSEDQNPSR-KPIVIREVWASNLEAEFELIGDLIDRFPYISMDTEFPGVVYRATFDQSK 60

Query: 61  PFNALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFD 120
           P+    R   SDHY++LKSNVDAL+LIQ+G+TLSD+DGNLPDL   +SRFIWEFNF DFD
Sbjct: 61  PY--AYRLRPSDHYRVLKSNVDALSLIQVGLTLSDADGNLPDLEGGESRFIWEFNFRDFD 120

Query: 121 LARDIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDF 180
           +ARD++APDSI+LL+RQGIDFDRNR EGIDS RFAELMMSSGLVCND+VSWVTFHSAYDF
Sbjct: 121 VARDLHAPDSIELLKRQGIDFDRNRSEGIDSARFAELMMSSGLVCNDAVSWVTFHSAYDF 180

Query: 181 AYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRA 240
            YL+KILT++ LP  L +FL +LR  FGD VYDVK+MMRFC SLYGGLDR+AK+L VNR 
Sbjct: 181 GYLVKILTRRCLPGALADFLKILRAFFGDRVYDVKHMMRFCNSLYGGLDRVAKTLEVNRV 240

Query: 241 VGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           VGKCHQAGSDSLLTWHAFQK+RD +FV +  EKHAGVLYGLE F
Sbjct: 241 VGKCHQAGSDSLLTWHAFQKIRDVYFVTDGPEKHAGVLYGLEVF 281

[Close]
BLAST of Cp4.1LG09g05460 vs. TrEMBL
Match: U5G173_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16310g PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 1.3e-113
Identity = 202/271 (74.54%), Postives = 232/271 (85.61%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALN---RSSSS 71
           K I IREVW+ NLESEF+LI +LI  FP +SMDTEFPG+VF  P  P N  N   +   S
Sbjct: 5   KEIAIREVWSCNLESEFELISELIVEFPYISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD++GNLPDLGT + RFIWEFNF DFD+ RD +APDSI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGTGN-RFIWEFNFRDFDVERDAHAPDSI 124

Query: 132 DLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKS 191
           +LLRRQGIDF RNR EG+DS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT + 
Sbjct: 125 ELLRRQGIDFGRNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTGRD 184

Query: 192 LPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+ L EFL VLRV FG+ +YDVK+MMRFCKSLYGGLDR+A++L+VNRAVGKCHQAGSDS
Sbjct: 185 LPSGLVEFLRVLRVFFGNKIYDVKHMMRFCKSLYGGLDRVARTLDVNRAVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE 280
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLE 274

[Close]
BLAST of Cp4.1LG09g05460 vs. TrEMBL
Match: I1LKN4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G180500 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 2.1e-113
Identity = 201/273 (73.63%), Postives = 234/273 (85.71%), Query Frame = 1 

Query: 14  IKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTA---PTAPFNALN--RSSSS 73
           + IR+VWASNLESEFQLIR+LIDH+P +SMDTEFPG+VF     PT P+N  N  R+  S
Sbjct: 13  VVIRQVWASNLESEFQLIRELIDHYPFISMDTEFPGVVFRPHLDPTKPYNHRNNNRNRHS 72

Query: 74  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 133
           DHY+LLKSNVDALNLIQ+G+TL+D+ GNLPDL    +R IWEFNF DFD+ARD YA DSI
Sbjct: 73  DHYRLLKSNVDALNLIQVGLTLTDAAGNLPDLA--GNRSIWEFNFRDFDVARDAYALDSI 132

Query: 134 DLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKS 193
           DLLRRQGIDF RN  +G++S RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+KILT+++
Sbjct: 133 DLLRRQGIDFARNATDGVESTRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRN 192

Query: 194 LPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 253
           LP RL+EFL  ++V FGDNVYDVK+MMRFC +LYGGLDR+A+SLNV RAVGKCHQAGSDS
Sbjct: 193 LPTRLEEFLKTVKVFFGDNVYDVKHMMRFCDTLYGGLDRVARSLNVERAVGKCHQAGSDS 252

Query: 254 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           LLTWHAFQK+ D +FV++E  KHAGVLYGLE F
Sbjct: 253 LLTWHAFQKIVDIYFVKDEHRKHAGVLYGLEVF 283

[Close]
BLAST of Cp4.1LG09g05460 vs. TAIR10
Match: AT5G22250.1 (AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 388.3 bits (996), Expect = 4.1e-108
Identity = 186/270 (68.89%), Postives = 225/270 (83.33%), Query Frame = 1 

Query: 14  IKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYKL 73
           I IR+VWA NLESEF LIR +++ +P +SMDTEFPG+++ A     + L R + +  Y L
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKAD---LDVLRRGNPNYLYNL 71

Query: 74  LKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLLR 133
           LKSNVDAL+LIQ+G+TLSD+DGNLPDLG   +R +IWEFNF DFD+ RD +APDSI+LLR
Sbjct: 72  LKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLR 131

Query: 134 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 193
           R GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT++ LP  
Sbjct: 132 RHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVA 191

Query: 194 LDEFLGVLRVLFGDNVYDVKYMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 253
           L EFLG+LR  FGD VYDVK++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLT
Sbjct: 192 LREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLT 251

Query: 254 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           W AFQ+MRD +FV++  EKHAGVLYGLE F
Sbjct: 252 WQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of Cp4.1LG09g05460 vs. TAIR10
Match: AT3G44260.1 (AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 383.6 bits (984), Expect = 1.0e-106
Identity = 185/271 (68.27%), Postives = 225/271 (83.03%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           ++  REVWA NLESEF+LI ++ID +P +SMDTEFPG++F +       L  ++  D Y 
Sbjct: 16  TVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSD------LRFTNPDDLYT 75

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFNFMDFDLARDIYAPDSIDLL 132
           LLK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFD+ARD +APDSI+LL
Sbjct: 76  LLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELL 135

Query: 133 RRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPN 192
           RRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP 
Sbjct: 136 RRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPG 195

Query: 193 RLDEFLGVLRVLFGDNVYDVKYMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLL 252
            L EF  V+RVLFG+ VYDVK+MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLL
Sbjct: 196 ALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLL 255

Query: 253 TWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           TWHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Sbjct: 256 TWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of Cp4.1LG09g05460 vs. TAIR10
Match: AT2G32070.1 (AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 298.5 bits (763), Expect = 4.3e-81
Identity = 149/266 (56.02%), Postives = 199/266 (74.81%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI+IREVW  NLESE  LIR+++D FP V+MDTEFPGIV   P   F    ++++  HY+
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTF----KTNTEYHYE 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FDL  DIYA DSI+LLR
Sbjct: 69  TLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLR 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GIDF +N   GIDS+RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP  
Sbjct: 129 QSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPET 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
              F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT 
Sbjct: 189 QTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTS 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
             F+K+++ FF+   +EK++GVLYGL
Sbjct: 249 CTFRKLQENFFI-GSMEKYSGVLYGL 266

[Close]
BLAST of Cp4.1LG09g05460 vs. TAIR10
Match: AT1G80780.3 (AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 290.0 bits (741), Expect = 1.5e-78
Identity = 145/266 (54.51%), Postives = 198/266 (74.44%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI+IREVW  NL+ E  LIRD++D FP V+MDTEFPGIV   P   F    +S++  HY+
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV-VRPVGTF----KSNADYHYE 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK+NV+ L +IQ+G+T S+  GNLP  GTD    IW+FNF +FDL  DI+A DSI+LL+
Sbjct: 69  TLKTNVNILKMIQLGLTFSNEQGNLPTCGTD-KYCIWQFNFREFDLDSDIFALDSIELLK 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GID  +N ++GIDS+RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+ 
Sbjct: 129 QSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDS 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
             +F  ++ V F   VYD+K++M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT 
Sbjct: 189 QTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTS 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
             F+K+++ FFV   + K++GVLYGL
Sbjct: 249 CTFRKLKENFFV-GPLHKYSGVLYGL 265

[Close]
BLAST of Cp4.1LG09g05460 vs. TAIR10
Match: AT5G10960.1 (AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 279.3 bits (713), Expect = 2.7e-75
Identity = 143/266 (53.76%), Postives = 189/266 (71.05%), Query Frame = 1 

Query: 13  SIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHYK 72
           SI IREVW  NL  EF LIR+++D F  ++MDTEFPG+V   P A F    + ++  +Y+
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLK-PVATF----KYNNDLNYR 68

Query: 73  LLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLR 132
            LK NVD L LIQ+G+T SD +GNLP  GTD    IW+FNF +F++  DIYA +SI+LLR
Sbjct: 69  TLKENVDLLKLIQVGLTFSDENGNLPTCGTDKF-CIWQFNFREFNIGEDIYASESIELLR 128

Query: 133 RQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNR 192
           + GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDF YL+K+LT K LP +
Sbjct: 129 QCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLK 188

Query: 193 LDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTW 252
             +F  +L V F   VYD+K++M FC  L+GGL+R+A+ + V R VG CHQAGSDSLLT 
Sbjct: 189 QADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTL 248

Query: 253 HAFQKMRDTFFVQNEVEKHAGVLYGL 279
            +F+K+++ +F     EK+ GVLYGL
Sbjct: 249 GSFRKLKERYF-PGSTEKYTGVLYGL 265

[Close]
BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match: gi|449443480|ref|XP_004139505.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus])

HSP 1 Score: 462.2 bits (1188), Expect = 6.4e-127
Identity = 222/281 (79.00%), Postives = 249/281 (88.61%), Query Frame = 1 

Query: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60
           M+ HDLN NH KSI+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG++F     P  
Sbjct: 1   MLIHDLNTNH-KSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIP-- 60

Query: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120
             + +  S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD+AR
Sbjct: 61  -KSPNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180
           D++AP+SI+LLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL
Sbjct: 121 DLHAPNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180

Query: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240
           +KILT + LP  L++FLGV+R+ FGDNVYD+KY+MRFC+SLYGGLDRIAK++NVNRAVGK
Sbjct: 181 VKILTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           CHQAGSDSLLTWHAFQKMRDTFFVQ E+ KHAGVLYGLE F
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match: gi|659127315|ref|XP_008463638.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo])

HSP 1 Score: 459.1 bits (1180), Expect = 5.4e-126
Identity = 223/284 (78.52%), Postives = 249/284 (87.68%), Query Frame = 1 

Query: 1   MVSHDLNNNH---YKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTA 60
           M+ HDLN NH   +K I+IREVWASNL+SEF+LI DLID FPCVSMDTEFPG++F   T 
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PFNALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFD 120
           P      +  S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGT D+RFIWEFNF DFD
Sbjct: 61  PKFP---NHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFD 120

Query: 121 LARDIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDF 180
           +ARD +APDSI+LLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF
Sbjct: 121 VARDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDF 180

Query: 181 AYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRA 240
            YL+KILTQ+ LP  L+EFLGV+RV FGDNVYD+KYMMRFC+SLYGGLDRIAK++NVNRA
Sbjct: 181 GYLVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRA 240

Query: 241 VGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           VGKCHQAGSDSLLTWHAFQKMRDTFFV+NE+ KHAGVLYGLE F
Sbjct: 241 VGKCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]
BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match: gi|1009174523|ref|XP_015868387.1| (PREDICTED: probable CCR4-associated factor 1 homolog 9 [Ziziphus jujuba])

HSP 1 Score: 431.0 bits (1107), Expect = 1.6e-117
Identity = 208/270 (77.04%), Postives = 235/270 (87.04%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSSDHY 71
           K I IREVWA NLE+EFQLIR+LID FP +SMDTEFPG+VF  P      + R   SDHY
Sbjct: 21  KPIAIREVWAHNLEAEFQLIRNLIDDFPFISMDTEFPGLVFRPPPQLDPTMRRLRPSDHY 80

Query: 72  KLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLL 131
            LLKSNVDALNLIQ+G+TLSDS GNLPDLG+ + RFIWEFNF DFD++RD +APDSIDLL
Sbjct: 81  LLLKSNVDALNLIQVGLTLSDSLGNLPDLGSHN-RFIWEFNFSDFDVSRDAHAPDSIDLL 140

Query: 132 RRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPN 191
           RRQGIDFDRNR EGIDSRRFAELMMSSGLVCND+VSWVTFHSAYDF YL+KILT++SLP 
Sbjct: 141 RRQGIDFDRNRDEGIDSRRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRRSLPG 200

Query: 192 RLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLT 251
           R++EFL VLRV FG+ VYD+K+MMRFCKSLYGGLDR+A++L V+RAVGKCHQAGSDSLLT
Sbjct: 201 RMEEFLRVLRVFFGNRVYDIKHMMRFCKSLYGGLDRVARTLEVDRAVGKCHQAGSDSLLT 260

Query: 252 WHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           WHAFQKMRD +FV +  EKHAGVLYGLE F
Sbjct: 261 WHAFQKMRDVYFVNDGPEKHAGVLYGLEVF 289

[Close]
BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match: gi|566167715|ref|XP_006384784.1| (CCR4-NOT transcription complex family protein [Populus trichocarpa])

HSP 1 Score: 425.6 bits (1093), Expect = 6.6e-116
Identity = 204/273 (74.73%), Postives = 235/273 (86.08%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALN---RSSSS 71
           K I IREVW+ NLESEF+LIRDLID FP +SMDTEFPG+VF  P  P N  N   +   S
Sbjct: 5   KEIVIREVWSCNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD++GNLPDLGT  +RFIWEFNF DFD+ RD +APDSI
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGT-GNRFIWEFNFRDFDVERDSHAPDSI 124

Query: 132 DLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKS 191
           +LLRRQGIDF+RNR EG+DS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT++ 
Sbjct: 125 ELLRRQGIDFERNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRE 184

Query: 192 LPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+ L  FL +LRV FG+N+YDVK+MMRFCKSLYGGLDR+A++L VNR VGKCHQAGSDS
Sbjct: 185 LPSGLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE F
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

[Close]
BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match: gi|743796916|ref|XP_011006693.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Populus euphratica])

HSP 1 Score: 425.6 bits (1093), Expect = 6.6e-116
Identity = 203/273 (74.36%), Postives = 236/273 (86.45%), Query Frame = 1 

Query: 12  KSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFNALN---RSSSS 71
           K I IREVW+ NLESEF+LIRDLID FP +SMDTEFPG+VF  P  P N  N   +   S
Sbjct: 5   KEIVIREVWSWNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKPS 64

Query: 72  DHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARDIYAPDSI 131
           DHYK+LKSNVDALNLIQ+G+TLSD+ GNLPDLGT ++RFIWEFNF DFD+ RD +APDS+
Sbjct: 65  DHYKILKSNVDALNLIQVGLTLSDAKGNLPDLGT-ENRFIWEFNFRDFDVERDSHAPDSV 124

Query: 132 DLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKS 191
           +LLRRQGIDF+RNR EG+DS +FAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILT++ 
Sbjct: 125 ELLRRQGIDFERNREEGVDSAKFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRQE 184

Query: 192 LPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDS 251
           LP+RL  FL +LRV FG+N+YDVK+MMRFCKSLYGGLDR+A++L VNR VGKCHQAGSDS
Sbjct: 185 LPSRLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 244

Query: 252 LLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 282
           LLTWHAFQKMRD FFV++  E+HAGVLYGLE F
Sbjct: 245 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g05460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CAF1K_ARATH7.3e-10768.89Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 ... [more]
CAF1I_ARATH1.8e-10568.27Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE... [more]
CAF1G_ARATH7.6e-8056.02Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE... [more]
CAF1F_ARATH2.7e-7754.51Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE... [more]
CAF1J_ARATH4.8e-7453.76Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 ... [more]
BLAST of Cp4.1LG09g05460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYC8_CUCSA4.4e-12779.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168920 PE=4 SV=1[more]
B9MYV0_POPTR4.6e-11674.73CCR4-NOT transcription complex family protein OS=Populus trichocarpa GN=POPTR_00... [more]
W9RQ69_9ROSA4.3e-11472.18Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016... [more]
U5G173_POPTR1.3e-11374.54Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16310g PE=4 SV=1[more]
I1LKN4_SOYBN2.1e-11373.63Uncharacterized protein OS=Glycine max GN=GLYMA_11G180500 PE=4 SV=1[more]
BLAST of Cp4.1LG09g05460 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22250.14.1e-10868.89 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT3G44260.11.0e-10668.27 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT2G32070.14.3e-8156.02 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G80780.31.5e-7854.51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT5G10960.12.7e-7553.76 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of Cp4.1LG09g05460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443480|ref|XP_004139505.1|6.4e-12779.00PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis sativus][more]
gi|659127315|ref|XP_008463638.1|5.4e-12678.52PREDICTED: probable CCR4-associated factor 1 homolog 11 [Cucumis melo][more]
gi|1009174523|ref|XP_015868387.1|1.6e-11777.04PREDICTED: probable CCR4-associated factor 1 homolog 9 [Ziziphus jujuba][more]
gi|566167715|ref|XP_006384784.1|6.6e-11674.73CCR4-NOT transcription complex family protein [Populus trichocarpa][more]
gi|743796916|ref|XP_011006693.1|6.6e-11674.36PREDICTED: probable CCR4-associated factor 1 homolog 11 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR006941RNase_CAF1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
biological_process GO:0017148 negative regulation of translation
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0000932 cytoplasmic mRNA processing body
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g05460.1Cp4.1LG09g05460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 19..146
score: 2.3E-9coord: 169..251
score: 2.
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 6..279
score: 3.6E
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 16..278
score: 4.0
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 1..281
score: 2.0E
NoneNo IPR availablePANTHERPTHR10797:SF3CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATEDcoord: 1..281
score: 2.0E