CsaV3_6G049680 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G049680
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	LysM domain-containing protein
Location	chr6: 28987585 .. 28988408 (+)
RNA-Seq Expression	CsaV3_6G049680
Synteny	CsaV3_6G049680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTAGGTTTTCCTTAACCATTCATTCTAAAATATATATAATTTCATTATTTGTATGCTCTGTTTGGAATTATCGACTAATTACTTCAAAGAATAAGAAATCTTTGGCACTTGAAAAAGTCATTTCAATTTAAGATCGTTAATACATAGGAATCAATTATATTATTGGTAAGTGATATGGAGGAAATAGTAGCTGTATCCAAGTCATTTTGAGTTGATTTGAAACGTATTCGGGTGATTTTCTTTCCATTTAAATTTATGTTGAAAGAGAAATAAGCATGTTGAGACTTATTGAAATTGTTGATGCTCATTTTGTGAGTTTGGAAATGCAGGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGAACTTAATATGATTTCCACCTGTTTGTCTTCAATAATATTTTAATTTAAGCACTCAAAAACCCATTCTCATTTGATAATAAAACCCAAATCTTTCTTATGCTGATTCCTAATTATTGTATTTTCACCGTGTGTTTGTTGTATGTTTGGGTTAATTAGTTCTATGTAATCTCAATCCTAATCTTAAATTTATTGGTTAAGATATTTCAT

mRNA sequence

ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA

Coding sequence (CDS)

ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA

Protein sequence

MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT*

Homology

[Close]

BLAST of CsaV3_6G049680 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
          QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 95

[Close]

BLAST of CsaV3_6G049680 vs. NCBI nr
Match: XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATISIAIFLLASSLLIFNISVKG     EVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKG-----EVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
          QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 90

[Close]

BLAST of CsaV3_6G049680 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATI IAIFLLA  LLIF+ISVKG     EVV  E SLELQCNKAYGVKSGDTCFA+A
Sbjct: 1  MAKATIPIAIFLLAFFLLIFSISVKG-----EVVAAEPSLELQCNKAYGVKSGDTCFALA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
            FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Sbjct: 61 HTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT 90

[Close]

BLAST of CsaV3_6G049680 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MAKATI--SIAIFLLASSLLIFNISVKGRNL-FREVVVEEASLELQCNKAYGVKSGDTCF 60
          MAKA I  S  IFLLA SLLIF+ISV+ R+  FR VV  EA LELQCNK YGVK+GDTCF
Sbjct: 1  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCF 60

Query: 61 AIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
           + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Sbjct: 61 DLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL 95

[Close]

BLAST of CsaV3_6G049680 vs. NCBI nr
Match: KAF7847920.1 (hypothetical protein BT93_L2446 [Corymbia citriodora subsp. variegata] >KAF8031399.1 hypothetical protein BT93_D0563 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 3   KATISIAIFLLASSLLIFNISVKGRNLFRE-VVVEEASLE----LQCNKAYGVKSGDTCF 62
           K T++I +FL+ S  L F++S   R L     +  +A+L     + C   YGVKSGDTCF
Sbjct: 7   KMTMAINLFLVLS--LFFSVSTAERKLLTSGALPTQATLSAPSLIYCASVYGVKSGDTCF 66

Query: 63  AIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
           A+AQ F LT   FD INPNLNC+ALFV QWLCV A +
Sbjct: 67  AVAQTFNLTALSFDKINPNLNCNALFVGQWLCVKAVI 101

[Close]

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
          QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 95

[Close]

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.7e-33
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATI IAIFLLA  LLIF+ISVKG     EVV  E SLELQCNKAYGVKSGDTCFA+A
Sbjct: 1  MAKATIPIAIFLLAFFLLIFSISVKG-----EVVAAEPSLELQCNKAYGVKSGDTCFALA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
            FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Sbjct: 61 HTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT 90

[Close]

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.3e-24
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MAKATI--SIAIFLLASSLLIFNISVKGRNL-FREVVVEEASLELQCNKAYGVKSGDTCF 60
          MAKA I  S  IFLLA SLLIF+ISV+ R+  FR VV  EA LELQCNK YGVK+GDTCF
Sbjct: 1  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCF 60

Query: 61 AIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
           + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Sbjct: 61 DLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL 95

[Close]

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A6J5X2L6 (LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24552 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 8  IAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTT 67
          I + L+ S LL+  ++ +G+ L   ++   A+  L+C  AYGVK+GDTCF IAQAF L T
Sbjct: 5  INLVLMLSLLLV--VASEGQFLANGILKPPAT--LKCESAYGVKTGDTCFEIAQAFNLPT 64

Query: 68 DHFDFINPNLNCSALFVSQWLCVNAFLT 96
          + FD INPNLNC+ALFV QW+C+N  L+
Sbjct: 65 ELFDSINPNLNCTALFVGQWVCLNGTLS 88

[Close]

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A803NLT8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.5e-14
Identity = 50/102 (49.02%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 1   MAKATISIAIFLLASSLLIFNISVKGRNLF--------REVVVEEASLELQCNKAYGVKS 60
           MA + I     +   SLL F +S+    LF        + V V        CN  YGVK 
Sbjct: 1   MANSNIKTLCLVFMISLL-FAVSMAENRLFGRFASGHGKAVPVLPLPSTPVCNSVYGVKD 60

Query: 61  GDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
           GDTCFA+ Q FKLTTD F  INPNLNC+ALFVSQWLCV+  L
Sbjct: 61  GDTCFAVTQMFKLTTDFFTSINPNLNCAALFVSQWLCVDGTL 101

The following BLAST results are available for this feature:

BLAST of CsaV3_6G049680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49182.1	2.3e-44	100.00	hypothetical protein Csa_004378 [Cucumis sativus]	[more]
XP_031742455.1	1.7e-39	94.74	lysM domain-containing protein ARB_00327-like [Cucumis sativus]	[more]
XP_016899229.1	2.0e-32	81.05	PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]	[more]
KGN49183.1	1.7e-23	67.01	hypothetical protein Csa_003390 [Cucumis sativus]	[more]
KAF7847920.1	1.9e-14	50.52	hypothetical protein BT93_L2446 [Corymbia citriodora subsp. variegata] >KAF80313...	[more]

BLAST of CsaV3_6G049680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLD2	1.1e-44	100.00	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 S...	[more]
A0A1S4DTB4	9.7e-33	81.05	lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
A0A0A0KHZ8	8.3e-24	67.01	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 S...	[more]
A0A6J5X2L6	3.5e-14	51.14	LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24...	[more]
A0A803NLT8	4.5e-14	49.02	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	SMART	SM00257	LysM_2	coord: 47..91 e-value: 6.4E-5 score: 32.3
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 48..90 e-value: 1.4E-6 score: 28.3
IPR018392	LysM domain	PROSITE	PS51782	LYSM	coord: 46..90 score: 12.776305
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 48..90 e-value: 3.83743E-7 score: 40.9317
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 44..90 e-value: 1.3E-16 score: 62.5
IPR036779	LysM domain superfamily	SUPERFAMILY	54106	LysM domain	coord: 44..90
None	No IPR available	PANTHER	PTHR34997	AM15	coord: 2..94
None	No IPR available	PANTHER	PTHR34997:SF13	LYSM DOMAIN-CONTAINING PROTEIN-RELATED	coord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G049680.1	CsaV3_6G049680.1	mRNA