Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTAGGTTTTCCTTAACCATTCATTCTAAAATATATATAATTTCATTATTTGTATGCTCTGTTTGGAATTATCGACTAATTACTTCAAAGAATAAGAAATCTTTGGCACTTGAAAAAGTCATTTCAATTTAAGATCGTTAATACATAGGAATCAATTATATTATTGGTAAGTGATATGGAGGAAATAGTAGCTGTATCCAAGTCATTTTGAGTTGATTTGAAACGTATTCGGGTGATTTTCTTTCCATTTAAATTTATGTTGAAAGAGAAATAAGCATGTTGAGACTTATTGAAATTGTTGATGCTCATTTTGTGAGTTTGGAAATGCAGGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGAACTTAATATGATTTCCACCTGTTTGTCTTCAATAATATTTTAATTTAAGCACTCAAAAACCCATTCTCATTTGATAATAAAACCCAAATCTTTCTTATGCTGATTCCTAATTATTGTATTTTCACCGTGTGTTTGTTGTATGTTTGGGTTAATTAGTTCTATGTAATCTCAATCCTAATCTTAAATTTATTGGTTAAGATATTTCAT
mRNA sequence
ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA
Coding sequence (CDS)
ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA
Protein sequence
MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT*
Homology
BLAST of CsaV3_6G049680 vs. NCBI nr
Match:
KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus])
HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query: 1 MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1 MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 95
BLAST of CsaV3_6G049680 vs. NCBI nr
Match:
XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus])
HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 0
Query: 1 MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
MAKATISIAIFLLASSLLIFNISVKG EVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1 MAKATISIAIFLLASSLLIFNISVKG-----EVVVEEASLELQCNKAYGVKSGDTCFAIA 60
Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 90
BLAST of CsaV3_6G049680 vs. NCBI nr
Match:
XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo])
HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0
Query: 1 MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
MAKATI IAIFLLA LLIF+ISVKG EVV E SLELQCNKAYGVKSGDTCFA+A
Sbjct: 1 MAKATIPIAIFLLAFFLLIFSISVKG-----EVVAAEPSLELQCNKAYGVKSGDTCFALA 60
Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Sbjct: 61 HTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT 90
BLAST of CsaV3_6G049680 vs. NCBI nr
Match:
KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus])
HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 0
Query: 1 MAKATI--SIAIFLLASSLLIFNISVKGRNL-FREVVVEEASLELQCNKAYGVKSGDTCF 60
MAKA I S IFLLA SLLIF+ISV+ R+ FR VV EA LELQCNK YGVK+GDTCF
Sbjct: 1 MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCF 60
Query: 61 AIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
+ Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Sbjct: 61 DLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL 95
BLAST of CsaV3_6G049680 vs. NCBI nr
Match:
KAF7847920.1 (hypothetical protein BT93_L2446 [Corymbia citriodora subsp. variegata] >KAF8031399.1 hypothetical protein BT93_D0563 [Corymbia citriodora subsp. variegata])
HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 0
Query: 3 KATISIAIFLLASSLLIFNISVKGRNLFRE-VVVEEASLE----LQCNKAYGVKSGDTCF 62
K T++I +FL+ S L F++S R L + +A+L + C YGVKSGDTCF
Sbjct: 7 KMTMAINLFLVLS--LFFSVSTAERKLLTSGALPTQATLSAPSLIYCASVYGVKSGDTCF 66
Query: 63 AIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
A+AQ F LT FD INPNLNC+ALFV QWLCV A +
Sbjct: 67 AVAQTFNLTALSFDKINPNLNCNALFVGQWLCVKAVI 101
BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match:
A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query: 1 MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1 MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 95
BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match:
A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 9.7e-33
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0
Query: 1 MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
MAKATI IAIFLLA LLIF+ISVKG EVV E SLELQCNKAYGVKSGDTCFA+A
Sbjct: 1 MAKATIPIAIFLLAFFLLIFSISVKG-----EVVAAEPSLELQCNKAYGVKSGDTCFALA 60
Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Sbjct: 61 HTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT 90
BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match:
A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 8.3e-24
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 0
Query: 1 MAKATI--SIAIFLLASSLLIFNISVKGRNL-FREVVVEEASLELQCNKAYGVKSGDTCF 60
MAKA I S IFLLA SLLIF+ISV+ R+ FR VV EA LELQCNK YGVK+GDTCF
Sbjct: 1 MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCF 60
Query: 61 AIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
+ Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Sbjct: 61 DLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL 95
BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match:
A0A6J5X2L6 (LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24552 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 0
Query: 8 IAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTT 67
I + L+ S LL+ ++ +G+ L ++ A+ L+C AYGVK+GDTCF IAQAF L T
Sbjct: 5 INLVLMLSLLLV--VASEGQFLANGILKPPAT--LKCESAYGVKTGDTCFEIAQAFNLPT 64
Query: 68 DHFDFINPNLNCSALFVSQWLCVNAFLT 96
+ FD INPNLNC+ALFV QW+C+N L+
Sbjct: 65 ELFDSINPNLNCTALFVGQWVCLNGTLS 88
BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match:
A0A803NLT8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 87.0 bits (214), Expect = 4.5e-14
Identity = 50/102 (49.02%), Postives = 58/102 (56.86%), Query Frame = 0
Query: 1 MAKATISIAIFLLASSLLIFNISVKGRNLF--------REVVVEEASLELQCNKAYGVKS 60
MA + I + SLL F +S+ LF + V V CN YGVK
Sbjct: 1 MANSNIKTLCLVFMISLL-FAVSMAENRLFGRFASGHGKAVPVLPLPSTPVCNSVYGVKD 60
Query: 61 GDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
GDTCFA+ Q FKLTTD F INPNLNC+ALFVSQWLCV+ L
Sbjct: 61 GDTCFAVTQMFKLTTDFFTSINPNLNCAALFVSQWLCVDGTL 101
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN49182.1 | 2.3e-44 | 100.00 | hypothetical protein Csa_004378 [Cucumis sativus] | [more] |
| XP_031742455.1 | 1.7e-39 | 94.74 | lysM domain-containing protein ARB_00327-like [Cucumis sativus] | [more] |
| XP_016899229.1 | 2.0e-32 | 81.05 | PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo] | [more] |
| KGN49183.1 | 1.7e-23 | 67.01 | hypothetical protein Csa_003390 [Cucumis sativus] | [more] |
| KAF7847920.1 | 1.9e-14 | 50.52 | hypothetical protein BT93_L2446 [Corymbia citriodora subsp. variegata] >KAF80313... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KLD2 | 1.1e-44 | 100.00 | LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 S... | [more] |
| A0A1S4DTB4 | 9.7e-33 | 81.05 | lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC1079... | [more] |
| A0A0A0KHZ8 | 8.3e-24 | 67.01 | LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 S... | [more] |
| A0A6J5X2L6 | 3.5e-14 | 51.14 | LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24... | [more] |
| A0A803NLT8 | 4.5e-14 | 49.02 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
