HG10002908.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTCGTGGGAAACGCTTGGGGAGATTGCAAATGTGGCCCAGTTAACGGGCATTGATGCAGTTCGTTTGATTTCCATGATAGTGAAATCTGCGAGCACTGCACGAATGCACAAAAAGAACTGCAGGCAATTTGCTCAGCACCTGAAGTTGATTGGGAACCTGCTGGAGCAGCTAAGATCTCGAGGCTTAAGAGGTATTCTGAGACTCGGGAGCCTCTGGAGCAGCTTGAAGAGGCTTTAAGAAGGTCGTATATTTTGGTCAACAGCTGCCAGGACCGCAGCTATCTCTATTTGCTCGCAATGGGTTGGAACCTGATATACCAATTCAGGCCAGCCCAAATGAAATTGACAGATATCTGCGCCTGGTCCATCTGATTACACTCGTTGACAATGCTCGAGTCAGGGTATGTATTTGATTTTGTTTATTTTTTTTCCCAAGTGTTATTATTTATTTGTTTATTTGCAGAATAGGGTCTTCAAAGATGCGTTTTTCCCATGCATGTTGACTTTCTGGATCTTTCATCTACTCTCATCCTTAACAAAGGGGGAACTTAAAAATATCACAGCTTAAAATAAAGTAAAAATGGAAATATCTGCTAGATGGTTGTGAACTTTGGAAAATAAAACCTATCATTGAAGAATAACCATATGGAAATCAAGTACTGCTGTATACTTATCAGTTGAATTTGATTAGTTCATCAAACTTGCTTCCAGGTGCTTATTTGAAAATTGAAATTGATCAAGGTTTTTTCATAGAACTTCTTGACTGATGGTTTTGTATTGCTTGAGACACACATTGTGTCTTCACTTATTCAATAACGTAATCTGATTAACTTCAAATTCTCAGGAGAGATTGGAAGACATTGAGAAGGATCAGCGTGAATATACTTTGGATGATGATGACAAAAGGATTCATGAAGTAATTCTGAACCCGGAACCTTCGAAAGATGAGGCAATGGTGTTGAAGAAATCCCTTTCCTGTTCATATCCAAACTTGCCGTTTAACAAAGCTCTACAAAAAGAAAATGAAAAGCTTCAGCTAGAACTACAACGGTCTCAAGCTAATCTGAATGTGGGTGAATGTGAGGTTATTCAACGTTTGATAGATGTCACTGAATCTGTAGCTGCAACTTCTCTTCCTGAGAAGAATTCACCTGAAAAATCCCATAAAGTAGTGGAAAATACATATGTGGATGCCAATAACGGACATTCATCTGATGAAAATTTCTATAAGAATACGATGTCGCGGACAACCTCAAGGTCTGCTATGTTCTGTTTTCAGCATTCCAATAACAAGGTTCTAAATCATAATCGTGAAACAAAGGATCACCATGGAGTTACTCTTGCAATTTTAAACTAAAAAAGCGAAGATCCTAAATAGTTTGACTTTGAGCGTTCTGTAAAATTTCCAAATTATGAAGATTGTTTTGAAAACTGTTTTTAGTAACTGTTCCGCCAACCAAGTTTTCTCTGCATAAAAAAAGTATTCTTATTATTTGTTTAAAAATATAAGACCTTTTAAACACTACTTCCAAATTGCCCCCAAAATCTCTCTATCATAGAATGTACAACCACTTCCGTAGGCATGTCATATATTATCAGAGGGGATCGTTCATCGAGCTTGATATTGATTTTTTTTTTCTTTGTGTGCAGAAAAAGTTCTTCCGTATCATCAGGACATGATCTGCTCTCGACTAGGGGTTCTGATCGGTATGGTGAATGGCACACTGACTTACTGGATTGTTGTTCAGAACTTTCTCTGTGTATGTTATCCTCTTCACTTCTAATTTTAAAGGTCAATTCAAATCGGGTTCTAAAGGCAAAGGGCTGGTTCGCTAGGCATAATTTATGCTTATTCAATTGGTATTATGCATGACAGAATTGATGATTTTGACATCGAAGGCTCAAGAGCTTGAACTACGTTTTTCAGCTTTTATTAAATATTTAAATTTGATAGACTGAGACTAGCAGACTGACGGTGATTGAAAATTCTGTTTTCTTTAATCGCAATGTGTCAGTGCAAGTAACACTACTTCTTTTCTGTTTCCAGGTCTTAAGACTTTTTTCTACCCTTGTGGGACTTTATCAAGGATTTCTACGGTTGCAACTAATAGGCATACATGTAAGTTAGCTTCGTGTCCTCAGATTTCCATAACGAATTAGAACTAGAACAAAATGTCCTATACAAATTTATTTATATTCACAACTATTACTTTCTGTTTCTGCCTTTCTCTGAAATAATCTATTTGACTTAACCATCAGCACCAGCAGAAGCATGTAATGATTTGATGGCATATACATTGATACTATCGTGCTGTTGCTATACTTGCTGTGTTAGAAGAAAGCTTCGCAAGATGTTAAACATCACGGTAGTTCCCTTTTCTGCCTGATTAATTAATCCTCTGTTATATTATATTGCCGGCTCACTTGCATATTAGAGAAATGTTTCTCTTGTTTTGATCCTTCTTCCATTCTAGAAACCCTGGTGATTGATTGTTCCTGTAGACACAACACATAGATTAGGCAGTTAACATTATATTTCTGGAGATCAAACAATGCAGATATGCAGCAATTATGCTTGACCAATTGCTGTGAGATGTCCATTTTCCCCACGGGACTGGGGCTCTGTGGGGACCCGCCCCGCTCGGGGCGGGGAATCCCTGATTACACGGGAAATGGGGGAGGGAGCGGGAAGAATTTACTCCCCGTTGACCAAACGGGGACGGGGAATGTCTCCGACCCGGCCCCGCCATGTACCGCCCTATATATATATATATACTTCTAAAAAATTATAATTTTTAACAATTAGCCTTTTCTTAATTCTCATCATAATTTTTTCATACTTTAATGCATTTCTAAAATAGAGATGTTAGACATGTTGAATGTTTATCACTTTTAAGACATGTATATTGTAATGTTTAAGTTGAAGTTAGCTATTAATATTTTAATTTTTAGAAATAAGGAGATAAATATTTTAATTATATCTTTGCATATAATATATTTTTATTTTTGTAAGAAAATTTTATAGTGTTTTATTTAAATAGAAATGTATCGGAATGACAAATTTATATAGAAAGTTTTAAAAATTTTATATCGTTGAGAATAAATTAAAAAAACTTGTTAAAAAATAAATAAATTAAGAATTTCTTTTTCTTTTTCTGGGAAACCCGATCCCCGCGGGGACTTTCGCTGGGATGGAGATTGAAATAGGGGCTTCCCTGTTCCCATCCCTGCCGTGTGGACATCTCTAATTGTTGCCTATTGTAATCGTGTATTTAATGGAGATTGAAATAGGGGCTTCCCTGTTCCCATCCCTGCCGTGTGGACATCTCTAATTGTTGCCTATTGTAATCGTGTATTTACAATGTGAATAAACTGGACCCTTAAATCGTCAATGAACAAGATTATTTGTCCAAATACTATCTCCATAAAGATCTGAATGGAAAATCTGTGGCAAATTGGCAGGGAGGTTTTGTTGATGACTTTCTCTCCCATCTTATGTGCTGCTGCTGTGCCCTGGTCCAAGAATGGCGAGAAGTTGAGATACGCGGGGTTTACGGTATGTACTTCAACCCTCTCCAACAAAAATTCTCTTTTACATTGCAAAAAAAACCTTTATCTTATTATTGATTCCATTAAACTTACTGCAATACAACAACTTAAACTAAACTTTTGGATTGATTTGTGATTTAACTTGATATCAGAGCAGGAGGTGATGTGTTCGAATGACTTGTAATGTCATTTACTCCCCACCTAATATTGATTTCTACTTATTGGACCTTTTATAACTTAAACTTTTGAGTTGATTGGTGATTTCATTTTATATACCATTTACATTTTTGGATACGGAAACTTCAGTTAATTTTGGATGAGTATCTGGTGTGTTTAATATATAAAAATAATCGTGCAGGTCCCGAAAAGACGAAAACAAGCCCCCCACCCTCCCAATACATGGAATCTTAAAAGTACAGTCGACACATATTCAACCATCCGTAGACTCGGAATAATTTCGATTGATGATAGAGTTATGTAATGGATTCAGGTAAAGTGTTGGATGTAACTGGAAGCTTACATTGGCATGCTTTTATGTTATTACTTACCATACACACAACCCCTTGCCTTTTGTATAGTTGACTCTGCACTTGCTGTATCATAGATTTGTTTTTAAACCTTTTACAGTGTTTCGAGTTTCTTACTCCCATGTTTGTGCCTGAGTTCAGCTGTAGATTTTGACCAAAGTTAACAATTGCATTTTAATGGTCAGCTAGTTTCCTTCAGCTTAGTTTCTTGTTTTTGGTTTTTTGTGGTTTTTTTCCCCTCTTAGGACTTCAAAGTTGCATTTTACAGTTTGGAGAACTATTGTTGA ATGTCGTCGTGGGAAACGCTTGGGGAGATTGCAAATGTGGCCCAGTTAACGGGCATTGATGCAGTTCGTTTGATTTCCATGATAGTGAAATCTGCGAGCACTGCACGAATGCACAAAAAGAACTGCAGGCAATTTGCTCAGCACCTGAAGTTGATTGGGAACCTGCTGGAGCAGCTAAGATCTCGAGGCTTAAGAGGACCGCAGCTATCTCTATTTGCTCGCAATGGGTTGGAACCTGATATACCAATTCAGGCCAGCCCAAATGAAATTGACAGATATCTGCGCCTGGTCCATCTGATTACACTCGTTGACAATGCTCGAGTCAGGGAGAGATTGGAAGACATTGAGAAGGATCAGCGTGAATATACTTTGGATGATGATGACAAAAGGATTCATGAAGTAATTCTGAACCCGGAACCTTCGAAAGATGAGGCAATGGTGTTGAAGAAATCCCTTTCCTGTTCATATCCAAACTTGCCGTTTAACAAAGCTCTACAAAAAGAAAATGAAAAGCTTCAGCTAGAACTACAACGGTCTCAAGCTAATCTGAATGTGGGTGAATGTGAGGTTATTCAACGTTTGATAGATGTCACTGAATCTGTAGCTGCAACTTCTCTTCCTGAGAAGAATTCACCTGAAAAATCCCATAAAGTAGTGGAAAATACATATGTGGATGCCAATAACGGACATTCATCTGATGAAAATTTCTATAAGAATACGATGTCGCGGACAACCTCAAGAAAAAGTTCTTCCGTATCATCAGGACATGATCTGCTCTCGACTAGGGGTTCTGATCGGGAGGTTTTGTTGATGACTTTCTCTCCCATCTTATGTGCTGCTGCTGTGCCCTGGTCCAAGAATGGCGAGAAGTTGAGATACGCGGGGTTTACGGACTTCAAAGTTGCATTTTACAGTTTGGAGAACTATTGTTGA ATGTCGTCGTGGGAAACGCTTGGGGAGATTGCAAATGTGGCCCAGTTAACGGGCATTGATGCAGTTCGTTTGATTTCCATGATAGTGAAATCTGCGAGCACTGCACGAATGCACAAAAAGAACTGCAGGCAATTTGCTCAGCACCTGAAGTTGATTGGGAACCTGCTGGAGCAGCTAAGATCTCGAGGCTTAAGAGGACCGCAGCTATCTCTATTTGCTCGCAATGGGTTGGAACCTGATATACCAATTCAGGCCAGCCCAAATGAAATTGACAGATATCTGCGCCTGGTCCATCTGATTACACTCGTTGACAATGCTCGAGTCAGGGAGAGATTGGAAGACATTGAGAAGGATCAGCGTGAATATACTTTGGATGATGATGACAAAAGGATTCATGAAGTAATTCTGAACCCGGAACCTTCGAAAGATGAGGCAATGGTGTTGAAGAAATCCCTTTCCTGTTCATATCCAAACTTGCCGTTTAACAAAGCTCTACAAAAAGAAAATGAAAAGCTTCAGCTAGAACTACAACGGTCTCAAGCTAATCTGAATGTGGGTGAATGTGAGGTTATTCAACGTTTGATAGATGTCACTGAATCTGTAGCTGCAACTTCTCTTCCTGAGAAGAATTCACCTGAAAAATCCCATAAAGTAGTGGAAAATACATATGTGGATGCCAATAACGGACATTCATCTGATGAAAATTTCTATAAGAATACGATGTCGCGGACAACCTCAAGAAAAAGTTCTTCCGTATCATCAGGACATGATCTGCTCTCGACTAGGGGTTCTGATCGGGAGGTTTTGTTGATGACTTTCTCTCCCATCTTATGTGCTGCTGCTGTGCCCTGGTCCAAGAATGGCGAGAAGTTGAGATACGCGGGGTTTACGGACTTCAAAGTTGCATTTTACAGTTTGGAGAACTATTGTTGA MSSWETLGEIANVAQLTGIDAVRLISMIVKSASTARMHKKNCRQFAQHLKLIGNLLEQLRSRGLRGPQLSLFARNGLEPDIPIQASPNEIDRYLRLVHLITLVDNARVRERLEDIEKDQREYTLDDDDKRIHEVILNPEPSKDEAMVLKKSLSCSYPNLPFNKALQKENEKLQLELQRSQANLNVGECEVIQRLIDVTESVAATSLPEKNSPEKSHKVVENTYVDANNGHSSDENFYKNTMSRTTSRKSSSVSSGHDLLSTRGSDREVLLMTFSPILCAAAVPWSKNGEKLRYAGFTDFKVAFYSLENYC Homology
BLAST of HG10002908.1 vs. NCBI nr
Match: KAA0052946.1 (protein MID1-COMPLEMENTING ACTIVITY 1 [Cucumis melo var. makuwa] >TYK11402.1 protein MID1-COMPLEMENTING ACTIVITY 1 [Cucumis melo var. makuwa]) HSP 1 Score: 455.3 bits (1170), Expect = 4.2e-124 Identity = 266/368 (72.28%), Postives = 273/368 (74.18%), Query Frame = 0
BLAST of HG10002908.1 vs. NCBI nr
Match: XP_038905240.1 (protein MID1-COMPLEMENTING ACTIVITY 1-like [Benincasa hispida] >XP_038905241.1 protein MID1-COMPLEMENTING ACTIVITY 1-like [Benincasa hispida] >XP_038905242.1 protein MID1-COMPLEMENTING ACTIVITY 1-like [Benincasa hispida]) HSP 1 Score: 420.6 bits (1080), Expect = 1.2e-113 Identity = 240/294 (81.63%), Postives = 246/294 (83.67%), Query Frame = 0
BLAST of HG10002908.1 vs. NCBI nr
Match: XP_004146155.1 (protein MID1-COMPLEMENTING ACTIVITY 1 isoform X2 [Cucumis sativus] >KGN55644.1 hypothetical protein Csa_011533 [Cucumis sativus]) HSP 1 Score: 420.2 bits (1079), Expect = 1.5e-113 Identity = 239/294 (81.29%), Postives = 245/294 (83.33%), Query Frame = 0
BLAST of HG10002908.1 vs. NCBI nr
Match: XP_031738428.1 (protein MID1-COMPLEMENTING ACTIVITY 1 isoform X1 [Cucumis sativus]) HSP 1 Score: 420.2 bits (1079), Expect = 1.5e-113 Identity = 239/294 (81.29%), Postives = 245/294 (83.33%), Query Frame = 0
BLAST of HG10002908.1 vs. NCBI nr
Match: XP_008448524.1 (PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 1 [Cucumis melo]) HSP 1 Score: 419.5 bits (1077), Expect = 2.6e-113 Identity = 238/294 (80.95%), Postives = 245/294 (83.33%), Query Frame = 0
BLAST of HG10002908.1 vs. ExPASy Swiss-Prot
Match: B6SJQ0 (Cell number regulator 13 OS=Zea mays OX=4577 GN=CNR13 PE=2 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 3.0e-64 Identity = 147/304 (48.36%), Postives = 200/304 (65.79%), Query Frame = 0
BLAST of HG10002908.1 vs. ExPASy Swiss-Prot
Match: Q8L7E9 (Protein MID1-COMPLEMENTING ACTIVITY 1 OS=Arabidopsis thaliana OX=3702 GN=MCA1 PE=1 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 6.7e-64 Identity = 147/293 (50.17%), Postives = 195/293 (66.55%), Query Frame = 0
BLAST of HG10002908.1 vs. ExPASy Swiss-Prot
Match: Q3EBY6 (Protein MID1-COMPLEMENTING ACTIVITY 2 OS=Arabidopsis thaliana OX=3702 GN=MCA2 PE=2 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 7.4e-55 Identity = 138/290 (47.59%), Postives = 185/290 (63.79%), Query Frame = 0
BLAST of HG10002908.1 vs. ExPASy TrEMBL
Match: A0A5A7UFF6 (Protein MID1-COMPLEMENTING ACTIVITY 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00550 PE=4 SV=1) HSP 1 Score: 455.3 bits (1170), Expect = 2.0e-124 Identity = 266/368 (72.28%), Postives = 273/368 (74.18%), Query Frame = 0
BLAST of HG10002908.1 vs. ExPASy TrEMBL
Match: A0A0A0L3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002640 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 7.3e-114 Identity = 239/294 (81.29%), Postives = 245/294 (83.33%), Query Frame = 0
BLAST of HG10002908.1 vs. ExPASy TrEMBL
Match: A0A1S3BKI0 (protein MID1-COMPLEMENTING ACTIVITY 1 OS=Cucumis melo OX=3656 GN=LOC103490676 PE=4 SV=1) HSP 1 Score: 419.5 bits (1077), Expect = 1.2e-113 Identity = 238/294 (80.95%), Postives = 245/294 (83.33%), Query Frame = 0
BLAST of HG10002908.1 vs. ExPASy TrEMBL
Match: A0A6J1CWA8 (protein MID1-COMPLEMENTING ACTIVITY 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014822 PE=4 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 4.9e-110 Identity = 229/294 (77.89%), Postives = 244/294 (82.99%), Query Frame = 0
BLAST of HG10002908.1 vs. ExPASy TrEMBL
Match: A0A6J1CW21 (protein MID1-COMPLEMENTING ACTIVITY 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014822 PE=4 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 4.9e-110 Identity = 229/294 (77.89%), Postives = 244/294 (82.99%), Query Frame = 0
BLAST of HG10002908.1 vs. TAIR 10
Match: AT4G35920.1 (PLAC8 family protein ) HSP 1 Score: 245.7 bits (626), Expect = 4.7e-65 Identity = 147/293 (50.17%), Postives = 195/293 (66.55%), Query Frame = 0
BLAST of HG10002908.1 vs. TAIR 10
Match: AT4G35920.3 (PLAC8 family protein ) HSP 1 Score: 245.7 bits (626), Expect = 4.7e-65 Identity = 147/293 (50.17%), Postives = 195/293 (66.55%), Query Frame = 0
BLAST of HG10002908.1 vs. TAIR 10
Match: AT4G35920.2 (PLAC8 family protein ) HSP 1 Score: 245.7 bits (626), Expect = 4.7e-65 Identity = 147/293 (50.17%), Postives = 195/293 (66.55%), Query Frame = 0
BLAST of HG10002908.1 vs. TAIR 10
Match: AT2G17780.1 (PLAC8 family protein ) HSP 1 Score: 215.7 bits (548), Expect = 5.3e-56 Identity = 138/290 (47.59%), Postives = 185/290 (63.79%), Query Frame = 0
BLAST of HG10002908.1 vs. TAIR 10
Match: AT2G17780.2 (PLAC8 family protein ) HSP 1 Score: 215.7 bits (548), Expect = 5.3e-56 Identity = 138/290 (47.59%), Postives = 185/290 (63.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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