Clc08G05965.1 (mRNA) Watermelon (cordophanus) v2

Overview
NameClc08G05965.1
TypemRNA
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr08: 17331619 .. 17333738 (-)
Sequence length261
RNA-Seq ExpressionClc08G05965.1
SyntenyClc08G05965.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGACGACGATGCCTCATGCCCGTTTCCCTTAACGCTGCACAGCTTGACTGCACAGAGAGGAGTCCTTCTCTTTCGTAGTTCGCTTGTAGCCTGTAGTGCACGTCCAACTGATTCCGTTCGACCGTTTGATTTCGTTGATCGGCCATCCACATCTAGAAAGTCTCCACAGTCCAAAGTAAGTTTTTTTTTTCAAGTTTTTTTAACTATTTCAAGTTTTATTTGAGTTTTTAAATTCAAAGTTATGGTTTTTTTTTTTAATTAAGTTTTTGCTTTATTTTTTGGTTAATTATTTTATGCATTTTATAAAGTTATAACTTTTAAGTTTAAAGTTTTGATTTTTTTGGTTTTGTTTGTGTGAATGTAAAAAGTTTATATTATGATTTTTGTGTAGGATGAATATGGAAATGGAAAAGTAAAAAAACTATCAATACAATAGAGAAGATTCTGATGAGGCAACCGTCAATGTTAATGAAGATAAAGAAATCCGTGAGAAAGGTGTAAGAAGAATAAAACATCCTATAGTTTGGGAACATTTTGAGTGTTTGAATGGTGATCCAAATAACCCTTATGCTAGGTGTAAATATTATGGAGCTACTTATGCATGTAATTCAAAGCGTAATGGTACGGGGACGATGAAAAATCACTTGGATAATGGTAAGAAATACCCATACTAAAGGAAGAGAGATCCAACTCAAAAGACCTTAGCTTTCAAACCTAAAGAAGAAGGTATTAAGGATGGTCATTCCCAACTTGTATGCGAATCATTTAGTTTAGAAAGTTGTCGTGAGGCTTTGGCTAAAATGATAATCATAGATGAATTGTTGAGAATAAAGGGTTTAAGAGATTTGTCAGTAAATTAACATGTTCCCAAGAGCCTAAGTTTGACATTCCATCTCATTTCACCATGGCTAGGGATATCGTGAAGATGTATGTTAATGAAAAACAAAAATTGAAAGATATGTTTGGGAAAATGAAATATAAAATTTGCCTCACTATTGATTGTTGGACTTTAGGACAGAATATGAACTATATGGTATTGATTGCACATTTTTTTTATCCTGATTAGAAGCTACATAAAAAATTCTTAGCTTTGGGGTTATTGAAAATCATAGAGGGGACACTATTGGTAGGGCTATGGAAAAGATTTTGAAAGATTGGGGAATTAAAAAGGTCATGGCTGTTGATAATGTTAGTTCAAATGATACTGCTATTGCTTTCATGATTAGGAGATTCACTGAAGGGTTGATATGTAATGGTGAGTATTGCATGTTAGATGTCGTACATACATATTTAACCTTATTGTATGTTATGCTTTAAAGGAGCATAATGAGAGCATTTGTAGAATTCGAAACGCTATTAGATATGTGAGATCTTCCCTTGCACGTATGATGAAGTTTAAAAAGTGTGCTGAAAATGAAAGAATATCTTGCAACAATATTATATGTCTTGATGTTCCCACTAGATGGAACTCTACGTATATGATGCTTGAAATGGCTATTAAGTTTGCAAGAGCATTTGATAGATTAGAAGATGATGAAGATGCTTATAGGAATGATTCACCACTTACTAAAGAGGATTGGTCAACTGCAATGATGTTGATTATATTTTTTAAAGTGTTTTATACTGTCACATTGAAAGTATCTGGATCTTTGTATACAACTTCAAACTTGGTTTTTCATGAGATACGTAGAATTCAGAATTGCATACAAAAGAATGCTAATAGTGGAAATAAAATGATTTCTACTATGGCTAATAATATGAAGCCTAAGTTTGACAAGTATTGGGGAAATGATGATAGGAAAAATAATATACTACTGTGCATTACTGTGGTTTTAGATCCTCGTTCAAGGTGAAGTACTTAACATATTGTTGGACAAATCTTTTTGGGCTAGACATTACCAAAATTAAGGTTAGAACAATTGAAAATGTTATGAGGCATCTTTTCTATGAATACAACAATGGGCAAATTAATGGTGTTTGTGTTAGTTCTAGTGATAGTTGTAATGCAAGTGTTTGGTGTTGGTGTTAATGCAGGTGCTAGTTGTAGTCCTAGTTCGTGTGAATCTACTAATGATCCTCATATTCGTGGTCGTAATTTTCAACTGTTTTGGATAG

mRNA sequence

ATGATTGACGACGATGCCTCATGCCCGTTTCCCTTAACGCTGCACAGCTTGACTGCACAGAGAGGAGTCCTTCTCTTTCGTAGTTCGCTTGTAGCCTGTAGTGCACGTCCAACTGATTCCGTTCGACCGTTTGATTTCGTTGATCGGCCATCCACATCTAGAAAGTCTCCACAGTCCAAAGTGCTAGTTGTAGTCCTAGTTCGTGTGAATCTACTAATGATCCTCATATTCGTGGTCGTAATTTTCAACTGTTTTGGATAG

Coding sequence (CDS)

ATGATTGACGACGATGCCTCATGCCCGTTTCCCTTAACGCTGCACAGCTTGACTGCACAGAGAGGAGTCCTTCTCTTTCGTAGTTCGCTTGTAGCCTGTAGTGCACGTCCAACTGATTCCGTTCGACCGTTTGATTTCGTTGATCGGCCATCCACATCTAGAAAGTCTCCACAGTCCAAAGTGCTAGTTGTAGTCCTAGTTCGTGTGAATCTACTAATGATCCTCATATTCGTGGTCGTAATTTTCAACTGTTTTGGATAG

Protein sequence

MIDDDASCPFPLTLHSLTAQRGVLLFRSSLVACSARPTDSVRPFDFVDRPSTSRKSPQSKVLVVVLVRVNLLMILIFVVVIFNCFG
Homology
The following BLAST results are available for this feature:
BLAST of Clc08G05965.1 vs.
Match NameE-valueIdentityDescription
BLAST of Clc08G05965.1 vs.
Match NameE-valueIdentityDescription
BLAST of Clc08G05965.1 vs.
Match NameE-valueIdentityDescription
BLAST of Clc08G05965.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Clc08G05965Clc08G05965gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc08G05965.1-exonClc08G05965.1-exon-ClcChr08:17331619..17331699exon
Clc08G05965.1-exonClc08G05965.1-exon-ClcChr08:17333559..17333738exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Clc08G05965.1-cdsClc08G05965.1-cds-ClcChr08:17331619..17331699CDS
Clc08G05965.1-cdsClc08G05965.1-cds-ClcChr08:17333559..17333738CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Clc08G05965.1Clc08G05965.1-proteinpolypeptide