Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCTTCAGATCCCTACTTTCCATAGCTCTCTTGGCTCTTCTCTTCATCTTCTCCGAATCAATACCCACTTCCAATTCTCTTACAGGAATCCCTCGCCGGGACGTCTTTCAGACGGCGGCTCATTGGATTACAAAAAGCAGTGTTATTGAGTCCTCTTCCCTAAGGAAATCCAATAATTTCCATATCGAAGCTAGAAGGCGGATTCGACCTGTACTAATCGGCAGCAACCATCCTAAATCGGCCGCAAATTGGAGCCGAGTAGCATCCTTTGAGGTTGGATCTGTGTTGTCTATTTGCATTTTATTGGGATTGTTCTTCTGA
mRNA sequence
ATGGCTGCCTTCAGATCCCTACTTTCCATAGCTCTCTTGGCTCTTCTCTTCATCTTCTCCGAATCAATACCCACTTCCAATTCTCTTACAGGAATCCCTCGCCGGGACGTCTTTCAGACGGCGGCTCATTGGATTACAAAAAGCAGTGTTATTGAGTCCTCTTCCCTAAGGAAATCCAATAATTTCCATATCGAAGCTAGAAGGCGGATTCGACCTGTACTAATCGGCAGCAACCATCCTAAATCGGCCGCAAATTGGAGCCGAGTAGCATCCTTTGAGGTTGGATCTGTGTTGTCTATTTGCATTTTATTGGGATTGTTCTTCTGA
Coding sequence (CDS)
ATGGCTGCCTTCAGATCCCTACTTTCCATAGCTCTCTTGGCTCTTCTCTTCATCTTCTCCGAATCAATACCCACTTCCAATTCTCTTACAGGAATCCCTCGCCGGGACGTCTTTCAGACGGCGGCTCATTGGATTACAAAAAGCAGTGTTATTGAGTCCTCTTCCCTAAGGAAATCCAATAATTTCCATATCGAAGCTAGAAGGCGGATTCGACCTGTACTAATCGGCAGCAACCATCCTAAATCGGCCGCAAATTGGAGCCGAGTAGCATCCTTTGAGGTTGGATCTGTGTTGTCTATTTGCATTTTATTGGGATTGTTCTTCTGA
Protein sequence
MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESSSLRKSNNFHIEARRRIRPVLIGSNHPKSAANWSRVASFEVGSVLSICILLGLFF
Homology
BLAST of Cla97C09G168930 vs. NCBI nr
Match:
KAA0046715.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])
HSP 1 Score: 117.1 bits (292), Expect = 9.5e-23
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 1 MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESSSLRKSN 60
MAA R L+SIALLALLF FSES+ TS+SLTGIP R++ T AH I SV ESS RKSN
Sbjct: 1 MAAIRPLVSIALLALLF-FSESLLTSHSLTGIPHRNILHTVAHRIVNGSV-ESSYQRKSN 60
Query: 61 NFHIEARRRIRPVLI-GSN--HPKSAANWSRVASFEVGSVLSICILLGLF 108
H + RRRIRP+LI GSN H KSA N SRVASFEVGS+L ICI LGLF
Sbjct: 61 KLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLF 108
BLAST of Cla97C09G168930 vs. NCBI nr
Match:
XP_008451651.1 (PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo])
HSP 1 Score: 97.8 bits (242), Expect = 6.0e-17
Identity = 64/96 (66.67%), Postives = 71/96 (73.96%), Query Frame = 0
Query: 1 MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESSSLRKSN 60
MAA R L+SIALLALLF FSES+ TS+SLTGIP R++ T AH I SV ESS RKSN
Sbjct: 1 MAAIRPLVSIALLALLF-FSESLLTSHSLTGIPHRNILHTVAHRIVNGSV-ESSYQRKSN 60
Query: 61 NFHIEARRRIRPVLI-GSN--HPKSAANWSRVASFE 94
H + RRRIRP+LI GSN H KSA N SRVASFE
Sbjct: 61 KLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFE 94
BLAST of Cla97C09G168930 vs. NCBI nr
Match:
KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 62/115 (53.91%), Postives = 77/115 (66.96%), Query Frame = 0
Query: 1 MAAFRSLLSIALLALLFIFSESIPT--------SNSLTGIPRRDVFQTAAHWITKSSVIE 60
MAA +SL+S+ALLALL +FSES+ SNSLTG+ RR+V QTAAH I +SV E
Sbjct: 1 MAALKSLVSVALLALL-LFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSV-E 60
Query: 61 SSSLRKSNNFHIEARRRIRPVLIGSNHPKSAANWSRVASFEVGSVLSICILLGLF 108
SS RK N + +RR+RPV G+ SAAN SR+AS VGSVL ++LGLF
Sbjct: 61 SSPERKMN---VHIKRRMRPVATGTR--SSAANRSRIASIGVGSVL---VVLGLF 105
BLAST of Cla97C09G168930 vs. NCBI nr
Match:
KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 71.6 bits (174), Expect = 4.6e-09
Identity = 58/116 (50.00%), Postives = 69/116 (59.48%), Query Frame = 0
Query: 1 MAAFRSLLSIALLALLFIFSESIPT--------SNSLTGIPRRDVFQTAAHWITKSSVIE 60
MAA ++LLSIAL+ALL +F ES+PT S SL GI RR++ QT A
Sbjct: 1 MAAIKALLSIALIALL-LFFESLPTSAAVHRGASTSLAGILRRNIVQTTAD--------H 60
Query: 61 SSSLRKSNNFHIEARRRIRPVLIGSNHPK-SAANWSRVASFEVGSVLSICILLGLF 108
K N HI+ R R+RPVLIG PK SAAN SR A VGS+L I +LLGLF
Sbjct: 61 HQVAEKKFNVHIKRRMRMRPVLIG--RPKTSAANRSREAFCGVGSMLCIFVLLGLF 105
BLAST of Cla97C09G168930 vs. NCBI nr
Match:
XP_022992473.1 (uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima])
HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 0
Query: 1 MAAFRSLLSIALLALLFIFSESIPTS--------NSLTGIPRRDVFQTAAHWITKSSVIE 60
MA +SL+SIALLALL +F E +P S + L G+ R D QTA + +
Sbjct: 63 MAPIKSLISIALLALLLLF-ERLPISAADHGVAPSPLAGVFRLDTLQTA-----ERHQVA 122
Query: 61 SSSLRKSNNFHIEARRRIRPVLIGSNHPK-SAANWSRVASFEVGSVLSICILLGLF 108
+ + +F + RRR R + + P S+ANWSR +SF VGS+L +C + GLF
Sbjct: 123 ENGIGNQYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLF 172
BLAST of Cla97C09G168930 vs. ExPASy TrEMBL
Match:
A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 4.6e-23
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 1 MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESSSLRKSN 60
MAA R L+SIALLALLF FSES+ TS+SLTGIP R++ T AH I SV ESS RKSN
Sbjct: 1 MAAIRPLVSIALLALLF-FSESLLTSHSLTGIPHRNILHTVAHRIVNGSV-ESSYQRKSN 60
Query: 61 NFHIEARRRIRPVLI-GSN--HPKSAANWSRVASFEVGSVLSICILLGLF 108
H + RRRIRP+LI GSN H KSA N SRVASFEVGS+L ICI LGLF
Sbjct: 61 KLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLF 108
BLAST of Cla97C09G168930 vs. ExPASy TrEMBL
Match:
A0A0A0K929 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 9.9e-18
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 0
Query: 1 MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESS-SLRKS 60
MAA R LLSIA LA LF FSES+ TS+SLTGIP R + TAAH I SV SS +RKS
Sbjct: 1 MAAIRPLLSIAFLA-LFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKS 60
Query: 61 NNFHIE--ARRRIRPVLIGS---NHPKSAANW-SRVASFEVGSVLSICILLGLF 108
N HI+ +RR P+L+ S NH KSAAN S VAS EVGS+L ICI LGLF
Sbjct: 61 NKLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLF 113
BLAST of Cla97C09G168930 vs. ExPASy TrEMBL
Match:
A0A1S3BT53 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 64/96 (66.67%), Postives = 71/96 (73.96%), Query Frame = 0
Query: 1 MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESSSLRKSN 60
MAA R L+SIALLALLF FSES+ TS+SLTGIP R++ T AH I SV ESS RKSN
Sbjct: 1 MAAIRPLVSIALLALLF-FSESLLTSHSLTGIPHRNILHTVAHRIVNGSV-ESSYQRKSN 60
Query: 61 NFHIEARRRIRPVLI-GSN--HPKSAANWSRVASFE 94
H + RRRIRP+LI GSN H KSA N SRVASFE
Sbjct: 61 KLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFE 94
BLAST of Cla97C09G168930 vs. ExPASy TrEMBL
Match:
A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 5.1e-06
Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = 0
Query: 1 MAAFRSLLSIALLALLFIFSESIPT--------SNSLTGIPRRDVFQTAAHWITKSSVIE 60
MAA +SLL I+LLALLF FSES+ T SNS+TG+ RR+V QTA H I S
Sbjct: 1 MAAIKSLLFISLLALLF-FSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADS---- 60
Query: 61 SSSLRKSNNFHIE--ARRRIRPVLIG---SNHPKSAANWSRVASFEVGSVL 99
N HI+ RIRPV G + + KSAA+ S+VASF +G +L
Sbjct: 61 ----EGKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLL 102
BLAST of Cla97C09G168930 vs. ExPASy TrEMBL
Match:
A0A6J1JZB1 (uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488793 PE=4 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 5.1e-06
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 0
Query: 1 MAAFRSLLSIALLALLFIFSESIPTS--------NSLTGIPRRDVFQTAAHWITKSSVIE 60
MA +SL+SIALLALL +F E +P S + L G+ R D QTA + +
Sbjct: 63 MAPIKSLISIALLALLLLF-ERLPISAADHGVAPSPLAGVFRLDTLQTA-----ERHQVA 122
Query: 61 SSSLRKSNNFHIEARRRIRPVLIGSNHPK-SAANWSRVASFEVGSVLSICILLGLF 108
+ + +F + RRR R + + P S+ANWSR +SF VGS+L +C + GLF
Sbjct: 123 ENGIGNQYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLF 172
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0046715.1 | 9.5e-23 | 68.18 | E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3... | [more] |
| XP_008451651.1 | 6.0e-17 | 66.67 | PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo] | [more] |
| KAG6575859.1 | 7.6e-12 | 53.91 | hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6593163.1 | 4.6e-09 | 50.00 | hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022992473.1 | 1.1e-05 | 38.79 | uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3D3Y6 | 4.6e-23 | 68.18 | E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN... | [more] |
| A0A0A0K929 | 9.9e-18 | 60.53 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1 | [more] |
| A0A1S3BT53 | 2.9e-17 | 66.67 | E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P... | [more] |
| A0A5A7VLE5 | 5.1e-06 | 46.85 | Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A6J1JZB1 | 5.1e-06 | 38.79 | uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
