Cla97C09G168930 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C09G168930
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	E3 ubiquitin-protein ligase MIEL1-like
Location	Cla97Chr09: 5256274 .. 5256600 (+)
RNA-Seq Expression	Cla97C09G168930
Synteny	Cla97C09G168930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTTCAGATCCCTACTTTCCATAGCTCTCTTGGCTCTTCTCTTCATCTTCTCCGAATCAATACCCACTTCCAATTCTCTTACAGGAATCCCTCGCCGGGACGTCTTTCAGACGGCGGCTCATTGGATTACAAAAAGCAGTGTTATTGAGTCCTCTTCCCTAAGGAAATCCAATAATTTCCATATCGAAGCTAGAAGGCGGATTCGACCTGTACTAATCGGCAGCAACCATCCTAAATCGGCCGCAAATTGGAGCCGAGTAGCATCCTTTGAGGTTGGATCTGTGTTGTCTATTTGCATTTTATTGGGATTGTTCTTCTGA

mRNA sequence

ATGGCTGCCTTCAGATCCCTACTTTCCATAGCTCTCTTGGCTCTTCTCTTCATCTTCTCCGAATCAATACCCACTTCCAATTCTCTTACAGGAATCCCTCGCCGGGACGTCTTTCAGACGGCGGCTCATTGGATTACAAAAAGCAGTGTTATTGAGTCCTCTTCCCTAAGGAAATCCAATAATTTCCATATCGAAGCTAGAAGGCGGATTCGACCTGTACTAATCGGCAGCAACCATCCTAAATCGGCCGCAAATTGGAGCCGAGTAGCATCCTTTGAGGTTGGATCTGTGTTGTCTATTTGCATTTTATTGGGATTGTTCTTCTGA

Coding sequence (CDS)

ATGGCTGCCTTCAGATCCCTACTTTCCATAGCTCTCTTGGCTCTTCTCTTCATCTTCTCCGAATCAATACCCACTTCCAATTCTCTTACAGGAATCCCTCGCCGGGACGTCTTTCAGACGGCGGCTCATTGGATTACAAAAAGCAGTGTTATTGAGTCCTCTTCCCTAAGGAAATCCAATAATTTCCATATCGAAGCTAGAAGGCGGATTCGACCTGTACTAATCGGCAGCAACCATCCTAAATCGGCCGCAAATTGGAGCCGAGTAGCATCCTTTGAGGTTGGATCTGTGTTGTCTATTTGCATTTTATTGGGATTGTTCTTCTGA

Protein sequence

MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESSSLRKSNNFHIEARRRIRPVLIGSNHPKSAANWSRVASFEVGSVLSICILLGLFF

Homology

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BLAST of Cla97C09G168930 vs. NCBI nr
Match: KAA0046715.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 9.5e-23
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 1   MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESSSLRKSN 60
           MAA R L+SIALLALLF FSES+ TS+SLTGIP R++  T AH I   SV ESS  RKSN
Sbjct: 1   MAAIRPLVSIALLALLF-FSESLLTSHSLTGIPHRNILHTVAHRIVNGSV-ESSYQRKSN 60

Query: 61  NFHIEARRRIRPVLI-GSN--HPKSAANWSRVASFEVGSVLSICILLGLF 108
             H + RRRIRP+LI GSN  H KSA N SRVASFEVGS+L ICI LGLF
Sbjct: 61  KLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLF 108

[Close]

BLAST of Cla97C09G168930 vs. NCBI nr
Match: XP_008451651.1 (PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 6.0e-17
Identity = 64/96 (66.67%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1  MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESSSLRKSN 60
          MAA R L+SIALLALLF FSES+ TS+SLTGIP R++  T AH I   SV ESS  RKSN
Sbjct: 1  MAAIRPLVSIALLALLF-FSESLLTSHSLTGIPHRNILHTVAHRIVNGSV-ESSYQRKSN 60

Query: 61 NFHIEARRRIRPVLI-GSN--HPKSAANWSRVASFE 94
            H + RRRIRP+LI GSN  H KSA N SRVASFE
Sbjct: 61 KLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFE 94

[Close]

BLAST of Cla97C09G168930 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 62/115 (53.91%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MAAFRSLLSIALLALLFIFSESIPT--------SNSLTGIPRRDVFQTAAHWITKSSVIE 60
           MAA +SL+S+ALLALL +FSES+          SNSLTG+ RR+V QTAAH I  +SV E
Sbjct: 1   MAALKSLVSVALLALL-LFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSV-E 60

Query: 61  SSSLRKSNNFHIEARRRIRPVLIGSNHPKSAANWSRVASFEVGSVLSICILLGLF 108
           SS  RK N   +  +RR+RPV  G+    SAAN SR+AS  VGSVL   ++LGLF
Sbjct: 61  SSPERKMN---VHIKRRMRPVATGTR--SSAANRSRIASIGVGSVL---VVLGLF 105

[Close]

BLAST of Cla97C09G168930 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-09
Identity = 58/116 (50.00%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 1   MAAFRSLLSIALLALLFIFSESIPT--------SNSLTGIPRRDVFQTAAHWITKSSVIE 60
           MAA ++LLSIAL+ALL +F ES+PT        S SL GI RR++ QT A          
Sbjct: 1   MAAIKALLSIALIALL-LFFESLPTSAAVHRGASTSLAGILRRNIVQTTAD--------H 60

Query: 61  SSSLRKSNNFHIEARRRIRPVLIGSNHPK-SAANWSRVASFEVGSVLSICILLGLF 108
                K  N HI+ R R+RPVLIG   PK SAAN SR A   VGS+L I +LLGLF
Sbjct: 61  HQVAEKKFNVHIKRRMRMRPVLIG--RPKTSAANRSREAFCGVGSMLCIFVLLGLF 105

[Close]

BLAST of Cla97C09G168930 vs. NCBI nr
Match: XP_022992473.1 (uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 1   MAAFRSLLSIALLALLFIFSESIPTS--------NSLTGIPRRDVFQTAAHWITKSSVIE 60
           MA  +SL+SIALLALL +F E +P S        + L G+ R D  QTA     +   + 
Sbjct: 63  MAPIKSLISIALLALLLLF-ERLPISAADHGVAPSPLAGVFRLDTLQTA-----ERHQVA 122

Query: 61  SSSLRKSNNFHIEARRRIRPVLIGSNHPK-SAANWSRVASFEVGSVLSICILLGLF 108
            + +    +F  + RRR R  +  +  P  S+ANWSR +SF VGS+L +C + GLF
Sbjct: 123 ENGIGNQYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLF 172

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BLAST of Cla97C09G168930 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.6e-23
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 1   MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESSSLRKSN 60
           MAA R L+SIALLALLF FSES+ TS+SLTGIP R++  T AH I   SV ESS  RKSN
Sbjct: 1   MAAIRPLVSIALLALLF-FSESLLTSHSLTGIPHRNILHTVAHRIVNGSV-ESSYQRKSN 60

Query: 61  NFHIEARRRIRPVLI-GSN--HPKSAANWSRVASFEVGSVLSICILLGLF 108
             H + RRRIRP+LI GSN  H KSA N SRVASFEVGS+L ICI LGLF
Sbjct: 61  KLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLF 108

[Close]

BLAST of Cla97C09G168930 vs. ExPASy TrEMBL
Match: A0A0A0K929 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.9e-18
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESS-SLRKS 60
           MAA R LLSIA LA LF FSES+ TS+SLTGIP R +  TAAH I   SV  SS  +RKS
Sbjct: 1   MAAIRPLLSIAFLA-LFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKS 60

Query: 61  NNFHIE--ARRRIRPVLIGS---NHPKSAANW-SRVASFEVGSVLSICILLGLF 108
           N  HI+   +RR  P+L+ S   NH KSAAN  S VAS EVGS+L ICI LGLF
Sbjct: 61  NKLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLF 113

[Close]

BLAST of Cla97C09G168930 vs. ExPASy TrEMBL
Match: A0A1S3BT53 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 64/96 (66.67%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1  MAAFRSLLSIALLALLFIFSESIPTSNSLTGIPRRDVFQTAAHWITKSSVIESSSLRKSN 60
          MAA R L+SIALLALLF FSES+ TS+SLTGIP R++  T AH I   SV ESS  RKSN
Sbjct: 1  MAAIRPLVSIALLALLF-FSESLLTSHSLTGIPHRNILHTVAHRIVNGSV-ESSYQRKSN 60

Query: 61 NFHIEARRRIRPVLI-GSN--HPKSAANWSRVASFE 94
            H + RRRIRP+LI GSN  H KSA N SRVASFE
Sbjct: 61 KLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFE 94

[Close]

BLAST of Cla97C09G168930 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.1e-06
Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 1   MAAFRSLLSIALLALLFIFSESIPT--------SNSLTGIPRRDVFQTAAHWITKSSVIE 60
           MAA +SLL I+LLALLF FSES+ T        SNS+TG+ RR+V QTA H I  S    
Sbjct: 1   MAAIKSLLFISLLALLF-FSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADS---- 60

Query: 61  SSSLRKSNNFHIE--ARRRIRPVLIG---SNHPKSAANWSRVASFEVGSVL 99
                   N HI+     RIRPV  G   + + KSAA+ S+VASF +G +L
Sbjct: 61  ----EGKMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLL 102

[Close]

BLAST of Cla97C09G168930 vs. ExPASy TrEMBL
Match: A0A6J1JZB1 (uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488793 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.1e-06
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 1   MAAFRSLLSIALLALLFIFSESIPTS--------NSLTGIPRRDVFQTAAHWITKSSVIE 60
           MA  +SL+SIALLALL +F E +P S        + L G+ R D  QTA     +   + 
Sbjct: 63  MAPIKSLISIALLALLLLF-ERLPISAADHGVAPSPLAGVFRLDTLQTA-----ERHQVA 122

Query: 61  SSSLRKSNNFHIEARRRIRPVLIGSNHPK-SAANWSRVASFEVGSVLSICILLGLF 108
            + +    +F  + RRR R  +  +  P  S+ANWSR +SF VGS+L +C + GLF
Sbjct: 123 ENGIGNQYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLF 172

The following BLAST results are available for this feature:

BLAST of Cla97C09G168930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046715.1	9.5e-23	68.18	E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3...	[more]
XP_008451651.1	6.0e-17	66.67	PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo]	[more]
KAG6575859.1	7.6e-12	53.91	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6593163.1	4.6e-09	50.00	hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022992473.1	1.1e-05	38.79	uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima]	[more]

BLAST of Cla97C09G168930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C09G168930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3Y6	4.6e-23	68.18	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0K929	9.9e-18	60.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1	[more]
A0A1S3BT53	2.9e-17	66.67	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P...	[more]
A0A5A7VLE5	5.1e-06	46.85	Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1JZB1	5.1e-06	38.79	uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Cla97C09G168930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G168930.2	Cla97C09G168930.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding