Lcy13g008470.1 (mRNA) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTCCAAAGCATTGATCAGATCAGATACCTCTGTACACAATTTCATGGCTGATTCTTCTGCTGCTTACATTCACATGGTAACCATTTCCCACCTTTCATATTCTTCTCTACTAAAATCAAATCTCCCCTTTCGAACTCGAAATTTCGTGTAACTAAATGTCCCTTCGATTTGCAGGTGCAGCACTTGATCGAAAAGTGTTTGATCTACCACATGAATAAAGAGGAGTGCATGGAAGCTCTCTCGAAACACGCAAACATCAGCCCCATAATCACCTCCACTGGTATATATAGCCAAGTATTGTTCTTTTTTCATTCTCTTCTTTCACAATCTTCTTCTTCCACAATCCTCAACGTACCTACTCAAGATTGTGCCTCTTTGAGTCCACTTATCTTGTCAATTGATTTTGAGATGGAACCCCATATGTAATCTAATGTGGTATTAGAGTACATAAAACCCAAACAGGTATTCGGTTCAAGAAAAAAAAAAAGAAGAATCCGACCTAAGAATGGTAATCCCAAAAGAGGCACCATCTTGAGGAGACATGTTGAGAACCCCATATTGAAAAGAAAAGTGGAGACTCCACTTATTGTCAATTGGTTTTGAGATGGAACCTCATGTTATCTAATTCTTCTCCTTAAAAGTCTCTACTTTCTCTTTCTTCTTGCAGTGTGGACGGAGCTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATTCAGAGTCTCGCTGTAAAAATGATAGAATATTAGCCGAAGAAGAGACGAGACAGTTAATCCAAAGGATGATGTCCAAAGACATAGATGACTAGCTAATTCTACAAACATGCATGCACCTATATTGCATAGATTGATTGTGACTTTTTTTCTTTTTCCTTCCTTCGCCTCGCTTTTTTTCTCTGTGCACATGTTCAAAATTGAATATATACAAATATTTAGGATGAGACGAATTACATTGTTCTCCCCATATGGTATATAGGCCAATTGATATATACCAAGTTGTCATCCAGTCAAGTGATAAGGGTAGTTATGTAATTCAATTATATTCCATAATGCCACATGGCAAGTAATGATTAGATTCTAGATGTTGACGTTGACTATTATGTACAATATATATTTACAACATATGGATTTTTTTTTTTTTTTTAGTAACTTTTGTAGGATAATAGAGATGATGACATAAGA TCTCCAAAGCATTGATCAGATCAGATACCTCTGTACACAATTTCATGGCTGATTCTTCTGCTGCTTACATTCACATGGTGCAGCACTTGATCGAAAAGTGTTTGATCTACCACATGAATAAAGAGGAGTGCATGGAAGCTCTCTCGAAACACGCAAACATCAGCCCCATAATCACCTCCACTGTGTGGACGGAGCTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATTCAGAGTCTCGCTGTAAAAATGATAGAATATTAGCCGAAGAAGAGACGAGACAGTTAATCCAAAGGATGATGTCCAAAGACATAGATGACTAGCTAATTCTACAAACATGCATGCACCTATATTGCATAGATTGATTGTGACTTTTTTTCTTTTTCCTTCCTTCGCCTCGCTTTTTTTCTCTGTGCACATGTTCAAAATTGAATATATACAAATATTTAGGATGAGACGAATTACATTGTTCTCCCCATATGGTATATAGGCCAATTGATATATACCAAGTTGTCATCCAGTCAAGTGATAAGGGTAGTTATGTAATTCAATTATATTCCATAATGCCACATGGCAAGTAATGATTAGATTCTAGATGTTGACGTTGACTATTATGTACAATATATATTTACAACATATGGATTTTTTTTTTTTTTTTAGTAACTTTTGTAGGATAATAGAGATGATGACATAAGA ATGGCTGATTCTTCTGCTGCTTACATTCACATGGTGCAGCACTTGATCGAAAAGTGTTTGATCTACCACATGAATAAAGAGGAGTGCATGGAAGCTCTCTCGAAACACGCAAACATCAGCCCCATAATCACCTCCACTGTGTGGACGGAGCTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATTCAGAGTCTCGCTGTAAAAATGATAGAATATTAGCCGAAGAAGAGACGAGACAGTTAATCCAAAGGATGATGTCCAAAGACATAGATGACTAG MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFEAYSESRCKNDRILAEEETRQLIQRMMSKDIDD Homology
BLAST of Lcy13g008470.1 vs. ExPASy TrEMBL
Match: A0A6J1CBZ2 (uncharacterized protein LOC111010170 OS=Momordica charantia OX=3673 GN=LOC111010170 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38 Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. ExPASy TrEMBL
Match: A0A0A0KQ71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G179770 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 6.2e-37 Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. ExPASy TrEMBL
Match: A0A6J1H147 (uncharacterized protein LOC111458619 OS=Cucurbita moschata OX=3662 GN=LOC111458619 PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35 Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. ExPASy TrEMBL
Match: A0A5A7V1X1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00180 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 5.8e-35 Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. ExPASy TrEMBL
Match: A0A1S3CGF7 (uncharacterized protein LOC103500185 OS=Cucumis melo OX=3656 GN=LOC103500185 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 5.8e-35 Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. NCBI nr
Match: XP_022139201.1 (uncharacterized protein LOC111010170 [Momordica charantia]) HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38 Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. NCBI nr
Match: XP_038893010.1 (uncharacterized protein LOC120081903 [Benincasa hispida]) HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37 Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. NCBI nr
Match: XP_004147706.1 (uncharacterized protein LOC101203417 [Cucumis sativus] >KGN50512.1 hypothetical protein Csa_000273 [Cucumis sativus]) HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36 Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. NCBI nr
Match: XP_022957149.1 (uncharacterized protein LOC111458619 [Cucurbita moschata]) HSP 1 Score: 158.3 bits (399), Expect = 3.2e-35 Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. NCBI nr
Match: XP_023551038.1 (uncharacterized protein LOC111808986 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 157.1 bits (396), Expect = 7.1e-35 Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. TAIR 10
Match: AT3G55240.1 (Plant protein 1589 of unknown function ) HSP 1 Score: 127.9 bits (320), Expect = 4.3e-30 Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. TAIR 10
Match: AT3G28990.1 (Plant protein 1589 of unknown function ) HSP 1 Score: 107.1 bits (266), Expect = 7.8e-24 Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. TAIR 10
Match: AT5G02580.1 (Plant protein 1589 of unknown function ) HSP 1 Score: 103.6 bits (257), Expect = 8.6e-23 Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. TAIR 10
Match: AT1G10657.2 (Plant protein 1589 of unknown function ) HSP 1 Score: 74.3 bits (181), Expect = 5.6e-14 Identity = 29/56 (51.79%), Postives = 45/56 (80.36%), Query Frame = 0
BLAST of Lcy13g008470.1 vs. TAIR 10
Match: AT1G10657.3 (Plant protein 1589 of unknown function ) HSP 1 Score: 74.3 bits (181), Expect = 5.6e-14 Identity = 29/56 (51.79%), Postives = 45/56 (80.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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