Lcy13g008470 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g008470
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Plant protein 1589 of unknown function
Location	Chr13: 8132321 .. 8133501 (-)
RNA-Seq Expression	Lcy13g008470
Synteny	Lcy13g008470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCAAAGCATTGATCAGATCAGATACCTCTGTACACAATTTCATGGCTGATTCTTCTGCTGCTTACATTCACATGGTAACCATTTCCCACCTTTCATATTCTTCTCTACTAAAATCAAATCTCCCCTTTCGAACTCGAAATTTCGTGTAACTAAATGTCCCTTCGATTTGCAGGTGCAGCACTTGATCGAAAAGTGTTTGATCTACCACATGAATAAAGAGGAGTGCATGGAAGCTCTCTCGAAACACGCAAACATCAGCCCCATAATCACCTCCACTGGTATATATAGCCAAGTATTGTTCTTTTTTCATTCTCTTCTTTCACAATCTTCTTCTTCCACAATCCTCAACGTACCTACTCAAGATTGTGCCTCTTTGAGTCCACTTATCTTGTCAATTGATTTTGAGATGGAACCCCATATGTAATCTAATGTGGTATTAGAGTACATAAAACCCAAACAGGTATTCGGTTCAAGAAAAAAAAAAAGAAGAATCCGACCTAAGAATGGTAATCCCAAAAGAGGCACCATCTTGAGGAGACATGTTGAGAACCCCATATTGAAAAGAAAAGTGGAGACTCCACTTATTGTCAATTGGTTTTGAGATGGAACCTCATGTTATCTAATTCTTCTCCTTAAAAGTCTCTACTTTCTCTTTCTTCTTGCAGTGTGGACGGAGCTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATTCAGAGTCTCGCTGTAAAAATGATAGAATATTAGCCGAAGAAGAGACGAGACAGTTAATCCAAAGGATGATGTCCAAAGACATAGATGACTAGCTAATTCTACAAACATGCATGCACCTATATTGCATAGATTGATTGTGACTTTTTTTCTTTTTCCTTCCTTCGCCTCGCTTTTTTTCTCTGTGCACATGTTCAAAATTGAATATATACAAATATTTAGGATGAGACGAATTACATTGTTCTCCCCATATGGTATATAGGCCAATTGATATATACCAAGTTGTCATCCAGTCAAGTGATAAGGGTAGTTATGTAATTCAATTATATTCCATAATGCCACATGGCAAGTAATGATTAGATTCTAGATGTTGACGTTGACTATTATGTACAATATATATTTACAACATATGGATTTTTTTTTTTTTTTTAGTAACTTTTGTAGGATAATAGAGATGATGACATAAGA

mRNA sequence

TCTCCAAAGCATTGATCAGATCAGATACCTCTGTACACAATTTCATGGCTGATTCTTCTGCTGCTTACATTCACATGGTGCAGCACTTGATCGAAAAGTGTTTGATCTACCACATGAATAAAGAGGAGTGCATGGAAGCTCTCTCGAAACACGCAAACATCAGCCCCATAATCACCTCCACTGTGTGGACGGAGCTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATTCAGAGTCTCGCTGTAAAAATGATAGAATATTAGCCGAAGAAGAGACGAGACAGTTAATCCAAAGGATGATGTCCAAAGACATAGATGACTAGCTAATTCTACAAACATGCATGCACCTATATTGCATAGATTGATTGTGACTTTTTTTCTTTTTCCTTCCTTCGCCTCGCTTTTTTTCTCTGTGCACATGTTCAAAATTGAATATATACAAATATTTAGGATGAGACGAATTACATTGTTCTCCCCATATGGTATATAGGCCAATTGATATATACCAAGTTGTCATCCAGTCAAGTGATAAGGGTAGTTATGTAATTCAATTATATTCCATAATGCCACATGGCAAGTAATGATTAGATTCTAGATGTTGACGTTGACTATTATGTACAATATATATTTACAACATATGGATTTTTTTTTTTTTTTTAGTAACTTTTGTAGGATAATAGAGATGATGACATAAGA

Coding sequence (CDS)

ATGGCTGATTCTTCTGCTGCTTACATTCACATGGTGCAGCACTTGATCGAAAAGTGTTTGATCTACCACATGAATAAAGAGGAGTGCATGGAAGCTCTCTCGAAACACGCAAACATCAGCCCCATAATCACCTCCACTGTGTGGACGGAGCTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATTCAGAGTCTCGCTGTAAAAATGATAGAATATTAGCCGAAGAAGAGACGAGACAGTTAATCCAAAGGATGATGTCCAAAGACATAGATGACTAG

Protein sequence

MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFEAYSESRCKNDRILAEEETRQLIQRMMSKDIDD

Homology

[Close]

BLAST of Lcy13g008470 vs. ExPASy TrEMBL
Match: A0A6J1CBZ2 (uncharacterized protein LOC111010170 OS=Momordica charantia OX=3673 GN=LOC111010170 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLI+HMNK+ECMEALSKHANISPIITSTVW ELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECMEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSESRCKNDRILAEEETRQLIQRMMSKDIDD 93
          AY ESR KNDRILAEEETRQLI+RM+SKD DD
Sbjct: 61 AYXESRNKNDRILAEEETRQLIERMISKDSDD 92

[Close]

BLAST of Lcy13g008470 vs. ExPASy TrEMBL
Match: A0A0A0KQ71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G179770 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.2e-37
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLI+HMNK+EC+EALSKHANISPIITSTVW ELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSESRCKNDRILAEEETRQLIQRMMSKDIDD 93
          AYSE + +NDRILAEEETR+LIQRMMSK  DD
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 92

[Close]

BLAST of Lcy13g008470 vs. ExPASy TrEMBL
Match: A0A6J1H147 (uncharacterized protein LOC111458619 OS=Cucurbita moschata OX=3662 GN=LOC111458619 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35
Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1   MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFE 60
           MADSSAAYIHMVQ+LIE CLI+HMNKEEC+EALSK+ANI+PIIT TVW ELEKENREFFE
Sbjct: 11  MADSSAAYIHMVQYLIENCLIFHMNKEECIEALSKYANITPIITETVWKELEKENREFFE 70

Query: 61  AYSESRCKNDRILAEEETRQLIQRMMSKDIDD 93
           AY ESR +NDRILAEEETRQLIQRMMSK  DD
Sbjct: 71  AYLESRSRNDRILAEEETRQLIQRMMSKHTDD 102

[Close]

BLAST of Lcy13g008470 vs. ExPASy TrEMBL
Match: A0A5A7V1X1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00180 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.8e-35
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLI+HMNK+EC+EALSKHANISP+ITSTVW ELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPVITSTVWKELEKENREFFE 60

Query: 61 AYSESRCKNDRILAEEETRQLIQR-MMSKDIDD 93
          AYSE + +NDRILAEEETR+LIQR MMSK  D+
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMMSKHSDE 93

[Close]

BLAST of Lcy13g008470 vs. ExPASy TrEMBL
Match: A0A1S3CGF7 (uncharacterized protein LOC103500185 OS=Cucumis melo OX=3656 GN=LOC103500185 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.8e-35
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLI+HMNK+EC+EALSKHANISP+ITSTVW ELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPVITSTVWKELEKENREFFE 60

Query: 61 AYSESRCKNDRILAEEETRQLIQR-MMSKDIDD 93
          AYSE + +NDRILAEEETR+LIQR MMSK  D+
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMMSKHSDE 93

[Close]

BLAST of Lcy13g008470 vs. NCBI nr
Match: XP_022139201.1 (uncharacterized protein LOC111010170 [Momordica charantia])

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLI+HMNK+ECMEALSKHANISPIITSTVW ELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECMEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSESRCKNDRILAEEETRQLIQRMMSKDIDD 93
          AY ESR KNDRILAEEETRQLI+RM+SKD DD
Sbjct: 61 AYXESRNKNDRILAEEETRQLIZRMISKDSDD 92

[Close]

BLAST of Lcy13g008470 vs. NCBI nr
Match: XP_038893010.1 (uncharacterized protein LOC120081903 [Benincasa hispida])

HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFE 60
          MADSSAAYIHMVQHLI+KCLI+HMNKEEC+EALSKHANISPIITSTVW ELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIDKCLIFHMNKEECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSESRCKNDRILAEEETRQLIQRMMSKDIDD 93
          AYSES  +NDRILAEEETRQLIQRMMSK  DD
Sbjct: 61 AYSESMGRNDRILAEEETRQLIQRMMSKHSDD 92

[Close]

BLAST of Lcy13g008470 vs. NCBI nr
Match: XP_004147706.1 (uncharacterized protein LOC101203417 [Cucumis sativus] >KGN50512.1 hypothetical protein Csa_000273 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFE 60
          MADSSAAYIHMVQHLIEKCLI+HMNK+EC+EALSKHANISPIITSTVW ELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYSESRCKNDRILAEEETRQLIQRMMSKDIDD 93
          AYSE + +NDRILAEEETR+LIQRMMSK  DD
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSDD 92

[Close]

BLAST of Lcy13g008470 vs. NCBI nr
Match: XP_022957149.1 (uncharacterized protein LOC111458619 [Cucurbita moschata])

HSP 1 Score: 158.3 bits (399), Expect = 3.2e-35
Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1   MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFE 60
           MADSSAAYIHMVQ+LIE CLI+HMNKEEC+EALSK+ANI+PIIT TVW ELEKENREFFE
Sbjct: 11  MADSSAAYIHMVQYLIENCLIFHMNKEECIEALSKYANITPIITETVWKELEKENREFFE 70

Query: 61  AYSESRCKNDRILAEEETRQLIQRMMSKDIDD 93
           AY ESR +NDRILAEEETRQLIQRMMSK  DD
Sbjct: 71  AYLESRSRNDRILAEEETRQLIQRMMSKHTDD 102

[Close]

BLAST of Lcy13g008470 vs. NCBI nr
Match: XP_023551038.1 (uncharacterized protein LOC111808986 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.1 bits (396), Expect = 7.1e-35
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1   MADSSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFE 60
           MADSSAAYIHMVQHLIE CLI HMNKEEC+EALSK+ANI+PIIT TVW ELEKENREFFE
Sbjct: 11  MADSSAAYIHMVQHLIENCLIVHMNKEECIEALSKYANITPIITETVWKELEKENREFFE 70

Query: 61  AYSESRCKNDRILAEEETRQLIQRMMSKDIDD 93
           AY ESR +NDRILAEEETRQLIQRMMSK  +D
Sbjct: 71  AYLESRSRNDRILAEEETRQLIQRMMSKHTND 102

[Close]

BLAST of Lcy13g008470 vs. TAIR 10
Match: AT3G55240.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 127.9 bits (320), Expect = 4.3e-30
Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MAD-SSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFF 60
          MAD SSA+YIHMVQH+IEKCLI+HM+KEEC+EALSKHANI+P+ITSTVW ELEKEN+EFF
Sbjct: 1  MADSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFF 60

Query: 61 EAYSESRCKNDRILAEEETRQLIQRMM---SKDIDD 93
          +AY E + K ++ ++EEET Q+IQ+++   SK+ DD
Sbjct: 61 KAYEERQSKQEQ-MSEEETNQMIQKIISDSSKESDD 95

[Close]

BLAST of Lcy13g008470 vs. TAIR 10
Match: AT3G28990.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 107.1 bits (266), Expect = 7.8e-24
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 4  SSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFEAYS 63
          S A YIH+VQH+IE CL ++M+KEECMEALS++ANI+PIITSTVW EL KEN++FFE Y 
Sbjct: 5  SPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFETYE 64

Query: 64 ESRCKNDRILAEEETRQLIQRMMS 88
          +   K +  ++EEET QLIQ ++S
Sbjct: 65 QKLMKKES-MSEEETNQLIQNIIS 87

[Close]

BLAST of Lcy13g008470 vs. TAIR 10
Match: AT5G02580.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 103.6 bits (257), Expect = 8.6e-23
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 4  SSAAYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFEAYS 63
          S A+YIH+V HLIE+C++++M KEECM+AL KHANI PIITSTVW EL KEN+EFFEAY 
Sbjct: 7  SQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAYE 66

Query: 64 ESRCKNDRILAEEETRQLIQRMMSK 89
            R   + I  E+ET + I+ ++S+
Sbjct: 67 RRR---EEIPTEKETARRIRDLLSR 88

[Close]

BLAST of Lcy13g008470 vs. TAIR 10
Match: AT1G10657.2 (Plant protein 1589 of unknown function )

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-14
Identity = 29/56 (51.79%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 7  AYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFEAY 63
          +YI MVQH+IE+C++  M ++EC++AL  HA+I P++T TVW  L++EN++FFE Y
Sbjct: 22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETY 77

[Close]

BLAST of Lcy13g008470 vs. TAIR 10
Match: AT1G10657.3 (Plant protein 1589 of unknown function )

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-14
Identity = 29/56 (51.79%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 7  AYIHMVQHLIEKCLIYHMNKEECMEALSKHANISPIITSTVWTELEKENREFFEAY 63
          +YI MVQH+IE+C++  M ++EC++AL  HA+I P++T TVW  L++EN++FFE Y
Sbjct: 22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKDFFETY 77

The following BLAST results are available for this feature:

BLAST of Lcy13g008470 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g008470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBZ2	1.5e-38	91.30	uncharacterized protein LOC111010170 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A0A0KQ71	6.2e-37	88.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G179770 PE=4 SV=1	[more]
A0A6J1H147	1.5e-35	85.87	uncharacterized protein LOC111458619 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A5A7V1X1	5.8e-35	84.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CGF7	5.8e-35	84.95	uncharacterized protein LOC103500185 OS=Cucumis melo OX=3656 GN=LOC103500185 PE=...	[more]

BLAST of Lcy13g008470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139201.1	1.8e-38	91.30	uncharacterized protein LOC111010170 [Momordica charantia]	[more]
XP_038893010.1	2.6e-37	90.22	uncharacterized protein LOC120081903 [Benincasa hispida]	[more]
XP_004147706.1	1.3e-36	88.04	uncharacterized protein LOC101203417 [Cucumis sativus] >KGN50512.1 hypothetical ...	[more]
XP_022957149.1	3.2e-35	85.87	uncharacterized protein LOC111458619 [Cucurbita moschata]	[more]
XP_023551038.1	7.1e-35	85.87	uncharacterized protein LOC111808986 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy13g008470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55240.1	4.3e-30	67.71	Plant protein 1589 of unknown function	[more]
AT3G28990.1	7.8e-24	61.90	Plant protein 1589 of unknown function	[more]
AT5G02580.1	8.6e-23	58.82	Plant protein 1589 of unknown function	[more]
AT1G10657.2	5.6e-14	51.79	Plant protein 1589 of unknown function	[more]
AT1G10657.3	5.6e-14	51.79	Plant protein 1589 of unknown function	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006476	Conserved hypothetical protein CHP01589, plant	PFAM	PF09713	A_thal_3526	coord: 12..63 e-value: 2.9E-26 score: 91.5
IPR006476	Conserved hypothetical protein CHP01589, plant	TIGRFAM	TIGR01589	TIGR01589	coord: 9..63 e-value: 1.1E-24 score: 84.2
IPR006476	Conserved hypothetical protein CHP01589, plant	PANTHER	PTHR31871	OS02G0137100 PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR31871:SF18	ANGIOTENSIN-CONVERTING ENZYME 2-RELATED	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g008470.1	Lcy13g008470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process