IVF0014474.3 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTGAATAAAAAGAAAAGAAAATTAAATTTAGGTTTTCCTCTCCCCACCCCTCAGTTTTGCATTATTCAGCCGCCCGCCAGTTCTGCAGCGCTGATCGGCGACCGCCACTGGCCACCCGTCGCACGCTGGTGAAAGCTCTGTCTCTCTCTCTTTCTCTACCTTAGATTTTTCTGTCCCTCAAAACTCTCGGCTGATCCGCCTCTCGCAATTTATCTTGTAGATTCTGAAACCCTCTGAATCGCAGTCGCAGCTCTCTCTCTCTCTCTCTCGATTTTATTCACACTGCTTAAAGGTTTGTTCTTGGTAATACTTTTGTTTTAGATTGAATGCTTGTTTTAGATTTGATCTCTCTGTCTCACTCTTGGTATGAAGTGAGCAATTATGCGACGAATCTCTCTCTCTCTTTCTTTCCATCTTTCTTTGTAGACTCATTGCTCATGGTTTTTCTTTTTTCTTATTTCGAAATTCCTCACTTCGTTGGTTTTAGGTTAAACGCTTGGAGGCGGAGAGATGGAAGGTGGGGGAAACCGTCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCCGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAATTATTATGCTCCGACATTTTCACATGGTTTGCTCAGAACAAAGGTAATTTTACTCCCTTCCACGTGGATAATCTTGGTTCCTATCTTCGTGCATTTTTCCTATCTTGGTTCCTATCTTCGTGGATAATCCTTCAGTCTTTCTGTAGATTGACCAGTTTCTCAGATTCAGTAGTGTTTTATTTTGCAAGCAATTAAATATTTCTTTGTTGTAACCTTTTGGAGAAGTAGTTTTGTGTTAGATATTATATTAAATTTAACTTCTACCAGCTTAATCTTTTGAGTTGAATTGATTATTTAAAATGGTAGCAGAGCATTTGAATCACCGAGGTTCTGTTCAAGCCCCCTAAACTGCTACTCTCCATTTATTATTGATTTTCTTTTTTTGGGTCTAAGTGAAGGGGAGAGTTAGCTTAAAGTTTTGACTTGAATCGATGATTTTAGAGTTTGTGTAAACATTGGAACGGGAATTCATTAAATAGCTAGATAAGTGTTTAGAAAATTTCTCTGAGGCGTGTGCCGAGACATGGCTGCCTCAATGAAGGTGCCTGAAATGCTGCTCTTCAACTCTATGTTTCTACTAATTTTTAGATAAGAATTTATAACTTTTAAGAAAGAAACCGATGAATATTTTTAGAGAGCATTTTTTTTTTTTGAATTAACAGCTCCACTTATTTGAACTTGTTATCATTTATTATTGGCAGTCATATTTCGCTTCATATATATTATAAAGTATTTTTATTTCCCATTTTCCGCCTAACATGTTCTTTTTTAGCTCCTCGCACTTAAGCCTCAAAGAGCTATGGCTGCACCTCAAGTTTTGAAGAAATATAGGTTCTAGCTTGTATTTTGTCCTTGATATAACCTGGTTAGCTAATGCTTGAATTCTCTTCCTAGAAGAAATCCAGATACTCTGAATTATTTTTTACTTTTTAAATGGTTGTTGATTTGTTTTAGAGCTTGGTACTTTGTGAGTGTGACATATTTAGGGTTTCGTTACCTTGATCTAATAGAGGTATGATTTTTATCTTGCAGAGCAACTATATATTGATGATTTAGAAACAATTCTTGATGAAGCTATGCTTTCATTGAATACACAGGTCGATGATGGCAGCATTGAGGAGGTATATTTTATACACCTCTCGGTCCTTTTTAGTCTTCGAGGAATGCTCTTTCTCTCGTAACTGTGGTTGGGTTTTTTTTCTTTTTTTGTTGTTTCTCATGATGAAATAGCATGCCGTTACATAAGACTAAGTTAACACAAATATTTGTGTGAGCTGCTATGACTAACTACTGCTGATGGATGGTTTTTTCTTACCCAAATTGGCTCTGGATGGTTCCCGACGTGACTTGTGAAAATGGAAGCAGAAATATCGTTAAAATTTTGCTTCCAACCAACTTTTAGTCTCATTGAATGATGCTTTTCATTGGAATAGTTTGAGATACTATCGAAAATTCACCAATTACCAATACTATCAAAATTTTACCTATTTATTGTTATGGTTGTGGCATTAGAAGATATTGCTTGGAAGACAGTGGTGATTGTATAAATACATTCCTAGTTGAAGAGAACCTTATATAGTTCGTCAATTTTACATCTAATAACTTCTTCCATCTAAGCTAAAAGTGAATTTTTTTTTTTTGAAGTCATATCCAATTTTCTGTAGGAGGTAACTGGAAAATTTTCATAATTTCTAATAGATTTGACCAGTCACATTTAGTACGAGCTCCACATCCTCCTTTTGCTCTCGTCCTCTTATATTAGAATGCTTGGTTGAAGTAGAAGAATGAGATACTGAATTGAACAGATGGAGAAGATGAGGATGTGAGTATCTGTCGAGTGAGATCAATGATGTATGATTTTATTTAAAAATCCATTCCTAAGAGTGAAATATGTTACCATCTTCTAGCCTTCTTCAAGAATTGATTGATTGCTCTTATTAATATTTTGTGTTGCTTGTGTTTCTTCTCTAATAATGCAGGTAGCTGAAAGATTGATTTTCATGCATGAGGAATGTGTAGATCGTAACTTTAGCTCTATCGAAAGGTTAAGGCAATCCCCTCGTCCTCAAGTTGCTCATGCTCACGTTAATCAGGTAGCTCAATTCTTTCATAGATCCACTTTGTTGAATAGGAAGTTTGTGTTCAATAGTATGATTTTGAGAGTACAGATTAGCATTGTTGTTTTTTATTCCCTTGCTACTGCTCACTTTTGCAGTTTTCTGCATCAGCTTATTATGGATCATGAATTGCATATTTTAGACGATGTAGTTCATTCTACAAACAAAAACATTTGCTTGCTGTATATAATATCTTCTAATCTTGACCTTGATGAACTTTAAGGCTGCGAGTGACGATGACGACGATGACGATGTAGAAGAAGATGTCAATAGAAATGATATGATGGTGGATGCCGTACAACCAGCCCAATCCAGGCCTGTCAATCATCAACTTAATCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAATAGGGGAACAAGAAATTAGTACCAACCTCTCGATGCATTCTATTTATCTAGGTAAATCATGAATCCCTTTGCCGTCTTCTTCAAACAGTGCATGAGCAATCAATTTTGTTTTGTGTGAAAATATATATAATATTAGAATCCAGCTTATGTTTTAAGAGAGATCATAAAGGCAGCCATTATGCTTTTTTTTTTTTTTTGAGTGTCATATTTATCCTTTCTTAGTTTGAGGATATATTCTTAATTGATGGAGAAAGACCATAGGGCTGGAGGGTCTTGATCCAACCGTATCTGAATACTGCGTTCTAAGGTTTAGAATTAAGAGTAGGATGGATCTCGGTGAATGAATGGTGGCAATTTTGTTTGATCGGG GTGAATAAAAAGAAAAGAAAATTAAATTTAGGTTTTCCTCTCCCCACCCCTCAGTTTTGCATTATTCAGCCGCCCGCCAGTTCTGCAGCGCTGATCGGCGACCGCCACTGGCCACCCGTCGCACGCTGATTCTGAAACCCTCTGAATCGCAGTCGCAGCTCTCTCTCTCTCTCTCTCGATTTTATTCACACTGCTTAAAGGTTAAACGCTTGGAGGCGGAGAGATGGAAGGTGGGGGAAACCGTCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCCGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAATTATTATGCTCCGACATTTTCACATGGTTTGCTCAGAACAAAGAGCAACTATATATTGATGATTTAGAAACAATTCTTGATGAAGCTATGCTTTCATTGAATACACAGGTCGATGATGGCAGCATTGAGGAGGTAGCTGAAAGATTGATTTTCATGCATGAGGAATGTGTAGATCGTAACTTTAGCTCTATCGAAAGGTTAAGGCAATCCCCTCGTCCTCAAGTTGCTCATGCTCACGTTAATCAGGCTGCGAGTGACGATGACGACGATGACGATGTAGAAGAAGATGTCAATAGAAATGATATGATGGTGGATGCCGTACAACCAGCCCAATCCAGGCCTGTCAATCATCAACTTAATCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAATAGGGGAACAAGAAATTAGTACCAACCTCTCGATGCATTCTATTTATCTAGGTAAATCATGAATCCCTTTGCCGTCTTCTTCAAACAGTGCATGAGCAATCAATTTTGTTTTGTGTGAAAATATATATAATATTAGAATCCAGCTTATGTTTTAAGAGAGATCATAAAGGCAGCCATTATGCTTTTTTTTTTTTTTTGAGTGTCATATTTATCCTTTCTTAGTTTGAGGATATATTCTTAATTGATGGAGAAAGACCATAGGGCTGGAGGGTCTTGATCCAACCGTATCTGAATACTGCGTTCTAAGGTTTAGAATTAAGAGTAGGATGGATCTCGGTGAATGAATGGTGGCAATTTTGTTTGATCGGG ATGGAAGGTGGGGGAAACCGTCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCCGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAATTATTATGCTCCGACATTTTCACATGGTTTGCTCAGAACAAAGAGCAACTATATATTGATGATTTAGAAACAATTCTTGATGAAGCTATGCTTTCATTGAATACACAGGTCGATGATGGCAGCATTGAGGAGGTAGCTGAAAGATTGATTTTCATGCATGAGGAATGTGTAGATCGTAACTTTAGCTCTATCGAAAGGTTAAGGCAATCCCCTCGTCCTCAAGTTGCTCATGCTCACGTTAATCAGGCTGCGAGTGACGATGACGACGATGACGATGTAGAAGAAGATGTCAATAGAAATGATATGATGGTGGATGCCGTACAACCAGCCCAATCCAGGCCTGTCAATCATCAACTTAATCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAATAGGGGAACAAGAAATTAG MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFAQNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSPRPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGWVQVTSRRNRGTRN Homology
BLAST of IVF0014474.3 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10 Identity = 45/147 (30.61%), Postives = 76/147 (51.70%), Query Frame = 0
BLAST of IVF0014474.3 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 5.9e-10 Identity = 52/177 (29.38%), Postives = 88/177 (49.72%), Query Frame = 0
BLAST of IVF0014474.3 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09 Identity = 59/188 (31.38%), Postives = 91/188 (48.40%), Query Frame = 0
BLAST of IVF0014474.3 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 6.5e-09 Identity = 57/187 (30.48%), Postives = 92/187 (49.20%), Query Frame = 0
BLAST of IVF0014474.3 vs. ExPASy Swiss-Prot
Match: Q8C8T8 (Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.6e-07 Identity = 50/188 (26.60%), Postives = 86/188 (45.74%), Query Frame = 0
BLAST of IVF0014474.3 vs. ExPASy TrEMBL
Match: A0A5D3E598 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006020 PE=3 SV=1) HSP 1 Score: 383.6 bits (984), Expect = 4.7e-103 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
BLAST of IVF0014474.3 vs. ExPASy TrEMBL
Match: A0A1S4E5H6 (pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=3 SV=1) HSP 1 Score: 383.6 bits (984), Expect = 4.7e-103 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
BLAST of IVF0014474.3 vs. ExPASy TrEMBL
Match: A0A0A0LDZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889860 PE=3 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95 Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0
BLAST of IVF0014474.3 vs. ExPASy TrEMBL
Match: A0A5A7T5E4 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G002360 PE=3 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 4.6e-90 Identity = 176/193 (91.19%), Postives = 178/193 (92.23%), Query Frame = 0
BLAST of IVF0014474.3 vs. ExPASy TrEMBL
Match: A0A6J1J400 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481044 PE=3 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77 Identity = 163/205 (79.51%), Postives = 172/205 (83.90%), Query Frame = 0
BLAST of IVF0014474.3 vs. NCBI nr
Match: XP_016903483.1 (PREDICTED: pre-rRNA-processing protein TSR2 [Cucumis melo] >TYK31303.1 pre-rRNA-processing protein TSR2 [Cucumis melo var. makuwa]) HSP 1 Score: 379 bits (973), Expect = 1.84e-132 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
BLAST of IVF0014474.3 vs. NCBI nr
Match: XP_004136275.1 (pre-rRNA-processing protein TSR2 homolog [Cucumis sativus] >KGN60230.1 hypothetical protein Csa_002055 [Cucumis sativus]) HSP 1 Score: 354 bits (909), Expect = 1.06e-122 Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0
BLAST of IVF0014474.3 vs. NCBI nr
Match: KAA0038692.1 (pre-rRNA-processing protein TSR2 [Cucumis melo var. makuwa]) HSP 1 Score: 336 bits (862), Expect = 1.39e-115 Identity = 178/194 (91.75%), Postives = 179/194 (92.27%), Query Frame = 0
BLAST of IVF0014474.3 vs. NCBI nr
Match: XP_038896815.1 (pre-rRNA-processing protein TSR2 homolog [Benincasa hispida]) HSP 1 Score: 294 bits (752), Expect = 8.57e-99 Identity = 163/197 (82.74%), Postives = 172/197 (87.31%), Query Frame = 0
BLAST of IVF0014474.3 vs. NCBI nr
Match: XP_022982103.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]) HSP 1 Score: 294 bits (753), Expect = 9.12e-99 Identity = 163/205 (79.51%), Postives = 172/205 (83.90%), Query Frame = 0
BLAST of IVF0014474.3 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region ) HSP 1 Score: 128.3 bits (321), Expect = 6.9e-30 Identity = 74/190 (38.95%), Postives = 117/190 (61.58%), Query Frame = 0
BLAST of IVF0014474.3 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region ) HSP 1 Score: 88.2 bits (217), Expect = 7.9e-18 Identity = 43/96 (44.79%), Postives = 68/96 (70.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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