IVF0014474 (gene) Melon (IVF77) v1

Overview


Name	IVF0014474
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	pre-rRNA-processing protein TSR2
Location	chr04: 2023416 .. 2026951 (+)
RNA-Seq Expression	IVF0014474
Synteny	IVF0014474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAATAAAAAGAAAAGAAAATTAAATTTAGGTTTTCCTCTCCCCACCCCTCAGTTTTGCATTATTCAGCCGCCCGCCAGTTCTGCAGCGCTGATCGGCGACCGCCACTGGCCACCCGTCGCACGCTGGTGAAAGCTCTGTCTCTCTCTCTTTCTCTACCTTAGATTTTTCTGTCCCTCAAAACTCTCGGCTGATCCGCCTCTCGCAATTTATCTTGTAGATTCTGAAACCCTCTGAATCGCAGTCGCAGCTCTCTCTCTCTCTCTCTCGATTTTATTCACACTGCTTAAAGGTTTGTTCTTGGTAATACTTTTGTTTTAGATTGAATGCTTGTTTTAGATTTGATCTCTCTGTCTCACTCTTGGTATGAAGTGAGCAATTATGCGACGAATCTCTCTCTCTCTTTCTTTCCATCTTTCTTTGTAGACTCATTGCTCATGGTTTTTCTTTTTTCTTATTTCGAAATTCCTCACTTCGTTGGTTTTAGGTTAAACGCTTGGAGGCGGAGAGATGGAAGGTGGGGGAAACCGTCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCCGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAATTATTATGCTCCGACATTTTCACATGGTTTGCTCAGAACAAAGGTAATTTTACTCCCTTCCACGTGGATAATCTTGGTTCCTATCTTCGTGCATTTTTCCTATCTTGGTTCCTATCTTCGTGGATAATCCTTCAGTCTTTCTGTAGATTGACCAGTTTCTCAGATTCAGTAGTGTTTTATTTTGCAAGCAATTAAATATTTCTTTGTTGTAACCTTTTGGAGAAGTAGTTTTGTGTTAGATATTATATTAAATTTAACTTCTACCAGCTTAATCTTTTGAGTTGAATTGATTATTTAAAATGGTAGCAGAGCATTTGAATCACCGAGGTTCTGTTCAAGCCCCCTAAACTGCTACTCTCCATTTATTATTGATTTTCTTTTTTTGGGTCTAAGTGAAGGGGAGAGTTAGCTTAAAGTTTTGACTTGAATCGATGATTTTAGAGTTTGTGTAAACATTGGAACGGGAATTCATTAAATAGCTAGATAAGTGTTTAGAAAATTTCTCTGAGGCGTGTGCCGAGACATGGCTGCCTCAATGAAGGTGCCTGAAATGCTGCTCTTCAACTCTATGTTTCTACTAATTTTTAGATAAGAATTTATAACTTTTAAGAAAGAAACCGATGAATATTTTTAGAGAGCATTTTTTTTTTTTGAATTAACAGCTCCACTTATTTGAACTTGTTATCATTTATTATTGGCAGTCATATTTCGCTTCATATATATTATAAAGTATTTTTATTTCCCATTTTCCGCCTAACATGTTCTTTTTTAGCTCCTCGCACTTAAGCCTCAAAGAGCTATGGCTGCACCTCAAGTTTTGAAGAAATATAGGTTCTAGCTTGTATTTTGTCCTTGATATAACCTGGTTAGCTAATGCTTGAATTCTCTTCCTAGAAGAAATCCAGATACTCTGAATTATTTTTTACTTTTTAAATGGTTGTTGATTTGTTTTAGAGCTTGGTACTTTGTGAGTGTGACATATTTAGGGTTTCGTTACCTTGATCTAATAGAGGTATGATTTTTATCTTGCAGAGCAACTATATATTGATGATTTAGAAACAATTCTTGATGAAGCTATGCTTTCATTGAATACACAGGTCGATGATGGCAGCATTGAGGAGGTATATTTTATACACCTCTCGGTCCTTTTTAGTCTTCGAGGAATGCTCTTTCTCTCGTAACTGTGGTTGGGTTTTTTTTCTTTTTTTGTTGTTTCTCATGATGAAATAGCATGCCGTTACATAAGACTAAGTTAACACAAATATTTGTGTGAGCTGCTATGACTAACTACTGCTGATGGATGGTTTTTTCTTACCCAAATTGGCTCTGGATGGTTCCCGACGTGACTTGTGAAAATGGAAGCAGAAATATCGTTAAAATTTTGCTTCCAACCAACTTTTAGTCTCATTGAATGATGCTTTTCATTGGAATAGTTTGAGATACTATCGAAAATTCACCAATTACCAATACTATCAAAATTTTACCTATTTATTGTTATGGTTGTGGCATTAGAAGATATTGCTTGGAAGACAGTGGTGATTGTATAAATACATTCCTAGTTGAAGAGAACCTTATATAGTTCGTCAATTTTACATCTAATAACTTCTTCCATCTAAGCTAAAAGTGAATTTTTTTTTTTTGAAGTCATATCCAATTTTCTGTAGGAGGTAACTGGAAAATTTTCATAATTTCTAATAGATTTGACCAGTCACATTTAGTACGAGCTCCACATCCTCCTTTTGCTCTCGTCCTCTTATATTAGAATGCTTGGTTGAAGTAGAAGAATGAGATACTGAATTGAACAGATGGAGAAGATGAGGATGTGAGTATCTGTCGAGTGAGATCAATGATGTATGATTTTATTTAAAAATCCATTCCTAAGAGTGAAATATGTTACCATCTTCTAGCCTTCTTCAAGAATTGATTGATTGCTCTTATTAATATTTTGTGTTGCTTGTGTTTCTTCTCTAATAATGCAGGTAGCTGAAAGATTGATTTTCATGCATGAGGAATGTGTAGATCGTAACTTTAGCTCTATCGAAAGGTTAAGGCAATCCCCTCGTCCTCAAGTTGCTCATGCTCACGTTAATCAGGTAGCTCAATTCTTTCATAGATCCACTTTGTTGAATAGGAAGTTTGTGTTCAATAGTATGATTTTGAGAGTACAGATTAGCATTGTTGTTTTTTATTCCCTTGCTACTGCTCACTTTTGCAGTTTTCTGCATCAGCTTATTATGGATCATGAATTGCATATTTTAGACGATGTAGTTCATTCTACAAACAAAAACATTTGCTTGCTGTATATAATATCTTCTAATCTTGACCTTGATGAACTTTAAGGCTGCGAGTGACGATGACGACGATGACGATGTAGAAGAAGATGTCAATAGAAATGATATGATGGTGGATGCCGTACAACCAGCCCAATCCAGGCCTGTCAATCATCAACTTAATCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAATAGGGGAACAAGAAATTAGTACCAACCTCTCGATGCATTCTATTTATCTAGGTAAATCATGAATCCCTTTGCCGTCTTCTTCAAACAGTGCATGAGCAATCAATTTTGTTTTGTGTGAAAATATATATAATATTAGAATCCAGCTTATGTTTTAAGAGAGATCATAAAGGCAGCCATTATGCTTTTTTTTTTTTTTTGAGTGTCATATTTATCCTTTCTTAGTTTGAGGATATATTCTTAATTGATGGAGAAAGACCATAGGGCTGGAGGGTCTTGATCCAACCGTATCTGAATACTGCGTTCTAAGGTTTAGAATTAAGAGTAGGATGGATCTCGGTGAATGAATGGTGGCAATTTTGTTTGATCGGG

mRNA sequence

GTGAATAAAAAGAAAAGAAAATTAAATTTAGGTTTTCCTCTCCCCACCCCTCAGTTTTGCATTATTCAGCCGCCCGCCAGTTCTGCAGCGCTGATCGGCGACCGCCACTGGCCACCCGTCGCACGCTGATTCTGAAACCCTCTGAATCGCAGTCGCAGCTCTCTCTCTCTCTCTCTCGATTTTATTCACACTGCTTAAAGGTTAAACGCTTGGAGGCGGAGAGATGGAAGGTGGGGGAAACCGTCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCCGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAATTATTATGCTCCGACATTTTCACATGGTTTGCTCAGAACAAAGAGCAACTATATATTGATGATTTAGAAACAATTCTTGATGAAGCTATGCTTTCATTGAATACACAGGTCGATGATGGCAGCATTGAGGAGGTAGCTGAAAGATTGATTTTCATGCATGAGGAATGTGTAGATCGTAACTTTAGCTCTATCGAAAGGTTAAGGCAATCCCCTCGTCCTCAAGTTGCTCATGCTCACGTTAATCAGGCTGCGAGTGACGATGACGACGATGACGATGTAGAAGAAGATGTCAATAGAAATGATATGATGGTGGATGCCGTACAACCAGCCCAATCCAGGCCTGTCAATCATCAACTTAATCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAATAGGGGAACAAGAAATTAGTACCAACCTCTCGATGCATTCTATTTATCTAGGTAAATCATGAATCCCTTTGCCGTCTTCTTCAAACAGTGCATGAGCAATCAATTTTGTTTTGTGTGAAAATATATATAATATTAGAATCCAGCTTATGTTTTAAGAGAGATCATAAAGGCAGCCATTATGCTTTTTTTTTTTTTTTGAGTGTCATATTTATCCTTTCTTAGTTTGAGGATATATTCTTAATTGATGGAGAAAGACCATAGGGCTGGAGGGTCTTGATCCAACCGTATCTGAATACTGCGTTCTAAGGTTTAGAATTAAGAGTAGGATGGATCTCGGTGAATGAATGGTGGCAATTTTGTTTGATCGGG

Coding sequence (CDS)

ATGGAAGGTGGGGGAAACCGTCTTCTCCCAGCTGATGCTTTTCCATTGTTCCAGGAAGGTATCGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCCGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAATTATTATGCTCCGACATTTTCACATGGTTTGCTCAGAACAAAGAGCAACTATATATTGATGATTTAGAAACAATTCTTGATGAAGCTATGCTTTCATTGAATACACAGGTCGATGATGGCAGCATTGAGGAGGTAGCTGAAAGATTGATTTTCATGCATGAGGAATGTGTAGATCGTAACTTTAGCTCTATCGAAAGGTTAAGGCAATCCCCTCGTCCTCAAGTTGCTCATGCTCACGTTAATCAGGCTGCGAGTGACGATGACGACGATGACGATGTAGAAGAAGATGTCAATAGAAATGATATGATGGTGGATGCCGTACAACCAGCCCAATCCAGGCCTGTCAATCATCAACTTAATCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAATAGGGGAACAAGAAATTAG

Protein sequence

MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFAQNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSPRPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGWVQVTSRRNRGTRN

Homology

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BLAST of IVF0014474 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 45/147 (30.61%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 17  FQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFAQNKEQLYIDDLETILD 76
           F+ G+ +V+ +W AL +AVEN WGG DS  K + +   +   F   K        ET+L 
Sbjct: 32  FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLFKNEKVVDAALIEETLLY 91

Query: 77  EAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERL----RQSPRPQVAHAHVNQA 136
             +    T V+D S   +A  +I ++ +C + N++ +E+L    ++  R + +   V+  
Sbjct: 92  AMIDEFETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRVVHIE 151

Query: 137 ASDDDDDDDVEE-DVNRNDMMVDAVQP 159
             DD+DD+DVE+ D    D  +D V P
Sbjct: 152 GDDDEDDEDVEDYDDEDEDEEMDEVVP 178

[Close]

BLAST of IVF0014474 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.9e-10
Identity = 52/177 (29.38%), Postives = 88/177 (49.72%), Query Frame = 0


Query: 16  LFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFAQNKEQLYIDDLETIL 75
           +F E +  VL  W  LQ+AV+N +GG  S++K E +   +  +F  N + L  D++E  +
Sbjct: 11  VFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQPDEVEDFI 70

Query: 76  DEAMLS-LNTQVDDGSIEEVAERLIFMHEECVDRNFSSIE----RLRQSPRPQVAHAHVN 135
            E M +  +T VDDGS+ +VA+++  M ++C     + +     +L Q  +     A   
Sbjct: 71  SELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQK-KTSSGRAKAT 130

Query: 136 QAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGWVQVTSRR 188
            A +  DDDDD EE+    D    +   + S    + L+ E   E +DGW  V  ++
Sbjct: 131 PAQTPQDDDDDDEEEA--MDCEGGSAGASVSSTAVNDLHHE--EEEDDGWTVVRRKK 181

[Close]

BLAST of IVF0014474 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 59/188 (31.38%), Postives = 91/188 (48.40%), Query Frame = 0


Query: 12  DAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFAQNKEQLYIDDL 71
           DA  LF+ G+   L  W ALQ+AVEN +GG  S+ K + L   +  +F +N + L +D++
Sbjct: 7   DARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEV 66

Query: 72  ETILDEAMLS-LNTQVDDGSIEEVAERL--IFMHEECVD----RNFSSIERLRQSPRPQV 131
           E  L E + +  +T V+DGS+ +V+++L  +F H +  D    R  +S    R+      
Sbjct: 67  EDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTAT 126

Query: 132 AHAHVNQAASDDDDDDDVEE---DVNRNDMMVDAV--QPAQSRPVNHQLNPEATAEAEDG 188
           A     +   D+DD D VEE       +    D V  QP  S P    +  E     EDG
Sbjct: 127 ALKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDI--VEDG 186

[Close]

BLAST of IVF0014474 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.5e-09
Identity = 57/187 (30.48%), Postives = 92/187 (49.20%), Query Frame = 0


Query: 12  DAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFAQNKEQLYIDDL 71
           D+  LF   +   L  W ALQ+AVEN +GG  S+ K E L   +  +F +N + L +D++
Sbjct: 7   DSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEV 66

Query: 72  ETILDEAMLS-LNTQVDDGSIEEVAERL--IFMHEECVDR-NFSSIERLRQSPRPQVAHA 131
           E  L E M++  +T V+DGS+ +V+++L  +F H +  DR     +  L    + +V   
Sbjct: 67  EDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKCKVRAT 126

Query: 132 HVNQAASDDDDDD-----DVEEDVNRNDMMVDAV--QPAQSRPVNHQLNPEATAEAEDGW 188
            +  A   D+DDD     ++E     +    D V  QP  S P +  +  E     EDGW
Sbjct: 127 ALPTAGETDEDDDANSVEEMEVAATNDGAATDGVCPQPEPSGPDSQTIKEEDI--VEDGW 186

[Close]

BLAST of IVF0014474 vs. ExPASy Swiss-Prot
Match: Q8C8T8 (Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-07
Identity = 50/188 (26.60%), Postives = 86/188 (45.74%), Query Frame = 0


Query: 12  DAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFAQNKEQLYIDDL 71
           D   LF   +   L  W ALQ+AVEN +GG  S+ K E L   +  +F  N + L ++++
Sbjct: 7   DVRVLFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD-LELEEI 66

Query: 72  ETILDEAMLS-LNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERL---------RQSPR 131
           E  L E M +  +T V+DGS+ +V+++L  M       + ++++ +         + +  
Sbjct: 67  EDFLGELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKKCKVTAT 126

Query: 132 PQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAV--QPAQSRPVNHQLNPEATAEAEDG 188
           P +     + A  D D  +++E     +    D V  QP  S P    +  E     EDG
Sbjct: 127 PLMTAKETDVAEDDVDSVEEMEVTATNDGATTDEVCPQPQPSDPDTQTIKEEDI--VEDG 186

[Close]

BLAST of IVF0014474 vs. ExPASy TrEMBL
Match: A0A5D3E598 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006020 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 4.7e-103
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120
           QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180
           RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 194
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of IVF0014474 vs. ExPASy TrEMBL
Match: A0A1S4E5H6 (pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 4.7e-103
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120
           QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180
           RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 194
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of IVF0014474 vs. ExPASy TrEMBL
Match: A0A0A0LDZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889860 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60
           MEGGGNRLLPA AFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC++IFTWF 
Sbjct: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60

Query: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120
           QNKEQLYIDDLE ILDEAMLSL+TQVDDGSIEEVAE+LI MHEECVD NFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180
           RPQVAHAHVNQA SDDDDDDDVEEDVNRNDMMVDAVQPAQSRP N QLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 194
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of IVF0014474 vs. ExPASy TrEMBL
Match: A0A5A7T5E4 (Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G002360 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.6e-90
Identity = 176/193 (91.19%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120
           QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180
           RPQVAHAHVNQ A        +     +NDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQVAQFFHRSTLLN---RKNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 194
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 190

[Close]

BLAST of IVF0014474 vs. ExPASy TrEMBL
Match: A0A6J1J400 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481044 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 163/205 (79.51%), Postives = 172/205 (83.90%), Query Frame = 0


Query: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDIFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120
           QNKE LYIDDLE ILDE MLSLNTQVDDGSIEEVAE+LIFMHEECVD NFSSI RLRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 121 RPQVAHAHVNQAASD-------DDDDDDVE----EDVNRNDMMVDAVQPAQSRPVNHQLN 180
            P+ AH+HV+QA SD       DDDDDD +     D  RNDMMVDA+Q  Q R VN Q  
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRNDMMVDAIQ-QQPRAVNQQPR 180

Query: 181 PEATAEAEDGWVQVTSRR-NRGTRN 194
           PEA+A AEDGWVQVTSRR +RGTRN
Sbjct: 181 PEASAPAEDGWVQVTSRRSSRGTRN 204

[Close]

BLAST of IVF0014474 vs. NCBI nr
Match: XP_016903483.1 (PREDICTED: pre-rRNA-processing protein TSR2 [Cucumis melo] >TYK31303.1 pre-rRNA-processing protein TSR2 [Cucumis melo var. makuwa])

HSP 1 Score: 379 bits (973), Expect = 1.84e-132
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120
           QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180
           RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 193
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of IVF0014474 vs. NCBI nr
Match: XP_004136275.1 (pre-rRNA-processing protein TSR2 homolog [Cucumis sativus] >KGN60230.1 hypothetical protein Csa_002055 [Cucumis sativus])

HSP 1 Score: 354 bits (909), Expect = 1.06e-122
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60
           MEGGGNRLLPA AFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC++IFTWF 
Sbjct: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60

Query: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120
           QNKEQLYIDDLE ILDEAMLSL+TQVDDGSIEEVAE+LI MHEECVD NFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180
           RPQVAHAHVNQA SDDDDDDDVEEDVNRNDMMVDAVQPAQSRP N QLNPEATAEAEDGW
Sbjct: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180

Query: 181 VQVTSRRNRGTRN 193
           VQVTSRRNRGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of IVF0014474 vs. NCBI nr
Match: KAA0038692.1 (pre-rRNA-processing protein TSR2 [Cucumis melo var. makuwa])

HSP 1 Score: 336 bits (862), Expect = 1.39e-115
Identity = 178/194 (91.75%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120
           QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNR-NDMMVDAVQPAQSRPVNHQLNPEATAEAEDG 180
           RPQVAHAHVNQ A            +NR NDMMVDAVQPAQSRPVNHQLNPEATAEAEDG
Sbjct: 121 RPQVAHAHVNQVAQFFH----RSTLLNRKNDMMVDAVQPAQSRPVNHQLNPEATAEAEDG 180

Query: 181 WVQVTSRRNRGTRN 193
           WVQVTSRRNRGTRN
Sbjct: 181 WVQVTSRRNRGTRN 190

[Close]

BLAST of IVF0014474 vs. NCBI nr
Match: XP_038896815.1 (pre-rRNA-processing protein TSR2 homolog [Benincasa hispida])

HSP 1 Score: 294 bits (752), Expect = 8.57e-99
Identity = 163/197 (82.74%), Postives = 172/197 (87.31%), Query Frame = 0


Query: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60
           MEGG  R L ADA PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIF WF 
Sbjct: 1   MEGG--RPLLADAIPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFKWFT 60

Query: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120
           QN+E LYIDDLE ILDEAMLSLNTQVDDGSIEEVAERLI MHEEC+DRNFSSIERLRQ+P
Sbjct: 61  QNREPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLIVMHEECLDRNFSSIERLRQTP 120

Query: 121 RPQVAHAHVNQAASDDDDDDDVE----EDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEA 180
            PQVAH  VNQA SDDDD+++ E     DV  +D+MVDAVQPAQSRPVN Q NPEA AEA
Sbjct: 121 LPQVAH--VNQAESDDDDEEEEEVENGRDVMSDDLMVDAVQPAQSRPVN-QPNPEAAAEA 180

Query: 181 EDGWVQVTSRRNRGTRN 193
           EDGWVQVTSRR+RGTRN
Sbjct: 181 EDGWVQVTSRRSRGTRN 192

[Close]

BLAST of IVF0014474 vs. NCBI nr
Match: XP_022982103.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 294 bits (753), Expect = 9.12e-99
Identity = 163/205 (79.51%), Postives = 172/205 (83.90%), Query Frame = 0


Query: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60
           MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAV+NEWGGRDSRRKVELLCSDIFTWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120
           QNKE LYIDDLE ILDE MLSLNTQVDDGSIEEVAE+LIFMHEECVD NFSSI RLRQSP
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 121 RPQVAHAHVNQAASD-------DDDDDDVE----EDVNRNDMMVDAVQPAQSRPVNHQLN 180
            P+ AH+HV+QA SD       DDDDDD +     D  RNDMMVDA+Q  Q R VN Q  
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRNDMMVDAIQQ-QPRAVNQQPR 180

Query: 181 PEATAEAEDGWVQVTSRRN-RGTRN 193
           PEA+A AEDGWVQVTSRR+ RGTRN
Sbjct: 181 PEASAPAEDGWVQVTSRRSSRGTRN 204

[Close]

BLAST of IVF0014474 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 128.3 bits (321), Expect = 6.9e-30
Identity = 74/190 (38.95%), Postives = 117/190 (61.58%), Query Frame = 0


Query: 6   NRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFAQNKEQ 65
           N  L  +A  + +EGIGL+L RW+A++ AVEN WGGRDS+ K     + +F +F Q+K+ 
Sbjct: 4   NATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP 63

Query: 66  LY-IDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSPRPQV 125
           +  I+ L  +LD+ +  LNT  +DGS++EVA  L+ ++E+C + N+  +E LR +     
Sbjct: 64  VKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRAT--YSQ 123

Query: 126 AHAHVNQAASDDDDDDDVEEDVNRNDMMVDAV-QPAQSRPVNHQLNPEATAEAEDGWVQV 185
             A V + ++ DD++ D E+D    DMMVDA  Q  ++ PV+  +       A+DGW  V
Sbjct: 124 TSASVVKVSNGDDEESDDEDDDQTTDMMVDASNQKQEAMPVDEPV-------ADDGWTVV 183

Query: 186 TSRRNRGTRN 194
           +SR+N+G RN
Sbjct: 184 SSRKNKGKRN 184

[Close]

BLAST of IVF0014474 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 88.2 bits (217), Expect = 7.9e-18
Identity = 43/96 (44.79%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 10  PADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFAQNKEQLYID 69
           P D   + Q  IG +LSRW  LQ+AV+N+WGG DS +K + L  ++F   +Q+   + ++
Sbjct: 24  PMDDDSVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQS-NVITVE 83

Query: 70  DLETILDEA-MLSLNTQVDDGSIEEVAERLIFMHEE 105
           ++E +L E+ +LS NT+++DGSIEEVAE+L+ +HEE
Sbjct: 84  EIENLLHESLLLSFNTEIEDGSIEEVAEQLMILHEE 118

The following BLAST results are available for this feature:

BLAST of IVF0014474 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06672	1.2e-10	30.61	Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
Q3KRG3	5.9e-10	29.38	Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=...	[more]
Q969E8	1.3e-09	31.38	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV...	[more]
Q3T090	6.5e-09	30.48	Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1	[more]
Q8C8T8	3.6e-07	26.60	Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus OX=10090 GN=Tsr2 PE=1 S...	[more]

BLAST of IVF0014474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E598	4.7e-103	100.00	Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4E5H6	4.7e-103	100.00	pre-rRNA-processing protein TSR2 OS=Cucumis melo OX=3656 GN=LOC103503689 PE=3 SV...	[more]
A0A0A0LDZ8	1.2e-95	93.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889860 PE=3 SV=1	[more]
A0A5A7T5E4	4.6e-90	91.19	Pre-rRNA-processing protein TSR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6J1J400	1.2e-77	79.51	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of IVF0014474 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903483.1	1.84e-132	100.00	PREDICTED: pre-rRNA-processing protein TSR2 [Cucumis melo] >TYK31303.1 pre-rRNA-...	[more]
XP_004136275.1	1.06e-122	93.78	pre-rRNA-processing protein TSR2 homolog [Cucumis sativus] >KGN60230.1 hypotheti...	[more]
KAA0038692.1	1.39e-115	91.75	pre-rRNA-processing protein TSR2 [Cucumis melo var. makuwa]	[more]
XP_038896815.1	8.57e-99	82.74	pre-rRNA-processing protein TSR2 homolog [Benincasa hispida]	[more]
XP_022982103.1	9.12e-99	79.51	pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]	[more]

BLAST of IVF0014474 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27990.1	6.9e-30	38.95	Pre-rRNA-processing protein TSR2, conserved region	[more]
AT3G22510.1	7.9e-18	44.79	Pre-rRNA-processing protein TSR2, conserved region	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019398	Pre-rRNA-processing protein TSR2	PFAM	PF10273	WGG	coord: 17..96 e-value: 7.1E-23 score: 80.9
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 12..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..193
None	No IPR available	PANTHER	PTHR21250:SF4	PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEIN	coord: 12..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014474.3	IVF0014474.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005634	nucleus