MS023305 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ACAAAGGCCAAGAACTTCCATCTAAGAAGGGATAGTTTCCAACTTCAACCTCTTAATGGAAGGATACAACAAGTGGTTGCTAAAGTGGGACCGCTTTTTCTCAAACCAATTCCATCTATTGGGACAAGGGAAAGTGTTCTATATTCTAGTAGAAAGACCAACGCTTTCACATGTTTTGCTGCTTTGGTGAGTTGGTTCTCCTTCTATTTGTTTGTTTGTTTTTTTTTTTTTTTAATGCTTGCTTCTTTTCTTTTGGCATTGAGTTATATTCTTCTCTTTTTACTTGAAAGTTTCTCCCCTTTGGTAGTTGGTAATAATCTTTTATTAGAAACTTTACGTAAGTATCATGAAATGTACCATCTTAAGCTTAGATGCCAAGGGAGATTATCAAAAGGCTTCCCAATTTGTTGAAATGAGAAATAATTTTATTGGAGGAAGTACAAAATAATAGTAGTTTATAAGGAAGTCATATTGCTTAATCCATCCTTCTTTCTATAACTGCTCCTTGCTTGTTCTTCACTTTACCGTCCTTTGTCTGATAGAGGGATGTTAGATGTTTTGGCTTTTCTTTCCTTGTTAGGTGATTACGTTGTGAATTGGGGGAAGAAGGATTTTTGTTATTGGATACCTAATTCTTCCCATGGGTTACCTTGTAAATCCTTTTTCCTTATTTTGCACAATCCCTCTTCTCCCAGCCTCCCGTTATTTTCCTTGTATCCTCAGGCATTTTTCCTTTCTGTTGGGGCCCCAATGTACTTTCTTTGGAAGGGTGCGTTTGAAGACCTAGATCATATTTTCTAGAACTTTTGGTTCGCTTGCTCAATCTGGGGTAGTTTGGTTCTAGTTTAGCTTGGAACAGAAGTTTTCGCTCTTTGATGGAGGAGGTTCTTTTACACCTGCCCTTTCATGATAAGGGTTGAAACCTTTGGTGTGTTGGATTTTTGCTCTTTTTTGGGGCTTTTAGCTTGAGAGTAGTAGGATTTTTAGAGGGATTGAGAGTTATTAAGATGTTGATCTCGATCATATTCTTTAGAACTGTCATATTTGAGTTTTTGTCTAAAGTTGAGTTGACTAAAGCAAAATAAAAATATTTAATGATGCACTTTGTCTGCAGAATGCTAGATGTGCAGCGGAGCAGACCCAAACAGTTACAAGAGAGGCTCCCACAATCACTGTTCTTCCTGGTAACAATCACCTACAGATTTTATGAATACTAGTAACTTTTAACATGGTCCGAAAATCGATCTCTCAAGCAGAACTCCATTGTCTGTCTCTCCTTGAAAATAAGTTGCATCGCTATGCTTTTGTTGATTTGTCTTTCTCCCTCTCAAACACACACAGCGTTGGCTTAGGCACTATCACAATTTCGGCTGTTGCTTTAAGCATTATATTTCCGAAAATTTCAGGCAAGGAGAAGTCACCGCAACTGGATGATGGTGATTCTGGCTTTCCACCTCGTGATGATGGTGATGGCGGTGGGGGAGGTGGCGGTGGCGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTCGGCTTCCTTGCTTTTCTAGGCTTCTTGAAAGATAAAGAAAGTGAAGGGCCTTATCAGAATGATAGGAGAAGA ACAAAGGCCAAGAACTTCCATCTAAGAAGGGATAGTTTCCAACTTCAACCTCTTAATGGAAGGATACAACAAGTGGTTGCTAAAGTGGGACCGCTTTTTCTCAAACCAATTCCATCTATTGGGACAAGGGAAAGTGTTCTATATTCTAGTAGAAAGACCAACGCTTTCACATGTTTTGCTGCTTTGAATGCTAGATGTGCAGCGGAGCAGACCCAAACAGTTACAAGAGAGGCTCCCACAATCACTGTTCTTCCTGGCAAGGAGAAGTCACCGCAACTGGATGATGGTGATTCTGGCTTTCCACCTCGTGATGATGGTGATGGCGGTGGGGGAGGTGGCGGTGGCGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTCGGCTTCCTTGCTTTTCTAGGCTTCTTGAAAGATAAAGAAAGTGAAGGGCCTTATCAGAATGATAGGAGAAGA ACAAAGGCCAAGAACTTCCATCTAAGAAGGGATAGTTTCCAACTTCAACCTCTTAATGGAAGGATACAACAAGTGGTTGCTAAAGTGGGACCGCTTTTTCTCAAACCAATTCCATCTATTGGGACAAGGGAAAGTGTTCTATATTCTAGTAGAAAGACCAACGCTTTCACATGTTTTGCTGCTTTGAATGCTAGATGTGCAGCGGAGCAGACCCAAACAGTTACAAGAGAGGCTCCCACAATCACTGTTCTTCCTGGCAAGGAGAAGTCACCGCAACTGGATGATGGTGATTCTGGCTTTCCACCTCGTGATGATGGTGATGGCGGTGGGGGAGGTGGCGGTGGCGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTCGGCTTCCTTGCTTTTCTAGGCTTCTTGAAAGATAAAGAAAGTGAAGGGCCTTATCAGAATGATAGGAGAAGA TKAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR Homology
BLAST of MS023305 vs. NCBI nr
Match: XP_022143520.1 (uncharacterized protein LOC111013392 [Momordica charantia]) HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75 Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of MS023305 vs. NCBI nr
Match: XP_023540533.1 (uncharacterized protein LOC111800870 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 254.6 bits (649), Expect = 5.3e-64 Identity = 130/149 (87.25%), Postives = 135/149 (90.60%), Query Frame = 0
BLAST of MS023305 vs. NCBI nr
Match: KAG6596785.1 (Protein YELLOW LEAF 1, choloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 251.1 bits (640), Expect = 5.9e-63 Identity = 129/149 (86.58%), Postives = 134/149 (89.93%), Query Frame = 0
BLAST of MS023305 vs. NCBI nr
Match: XP_023005574.1 (uncharacterized protein LOC111498519 isoform X1 [Cucurbita maxima] >XP_023005575.1 uncharacterized protein LOC111498519 isoform X1 [Cucurbita maxima] >XP_023005577.1 uncharacterized protein LOC111498519 isoform X2 [Cucurbita maxima]) HSP 1 Score: 250.8 bits (639), Expect = 7.7e-63 Identity = 129/149 (86.58%), Postives = 134/149 (89.93%), Query Frame = 0
BLAST of MS023305 vs. NCBI nr
Match: XP_022949842.1 (uncharacterized protein LOC111453117 [Cucurbita moschata] >XP_022949851.1 uncharacterized protein LOC111453117 [Cucurbita moschata]) HSP 1 Score: 248.4 bits (633), Expect = 3.8e-62 Identity = 128/149 (85.91%), Postives = 133/149 (89.26%), Query Frame = 0
BLAST of MS023305 vs. ExPASy Swiss-Prot
Match: Q0E3V2 (Protein YELLOW LEAF 1, choloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=YL1 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08 Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 0
BLAST of MS023305 vs. ExPASy Swiss-Prot
Match: F1SZ44 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08 Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0
BLAST of MS023305 vs. ExPASy Swiss-Prot
Match: F1SZ42 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 9.6e-08 Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0
BLAST of MS023305 vs. ExPASy Swiss-Prot
Match: F1SZ41 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RF2 PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 9.6e-08 Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0
BLAST of MS023305 vs. ExPASy TrEMBL
Match: A0A6J1CP11 (uncharacterized protein LOC111013392 OS=Momordica charantia OX=3673 GN=LOC111013392 PE=4 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 8.5e-76 Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of MS023305 vs. ExPASy TrEMBL
Match: A0A6J1KZM4 (uncharacterized protein LOC111498519 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498519 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 3.7e-63 Identity = 129/149 (86.58%), Postives = 134/149 (89.93%), Query Frame = 0
BLAST of MS023305 vs. ExPASy TrEMBL
Match: A0A6J1GD79 (uncharacterized protein LOC111453117 OS=Cucurbita moschata OX=3662 GN=LOC111453117 PE=4 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62 Identity = 128/149 (85.91%), Postives = 133/149 (89.26%), Query Frame = 0
BLAST of MS023305 vs. ExPASy TrEMBL
Match: A0A6J1F258 (uncharacterized protein LOC111438781 OS=Cucurbita moschata OX=3662 GN=LOC111438781 PE=4 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 9.1e-62 Identity = 128/150 (85.33%), Postives = 135/150 (90.00%), Query Frame = 0
BLAST of MS023305 vs. ExPASy TrEMBL
Match: A0A6J1HQC3 (uncharacterized protein LOC111465127 OS=Cucurbita maxima OX=3661 GN=LOC111465127 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 3.5e-61 Identity = 127/150 (84.67%), Postives = 134/150 (89.33%), Query Frame = 0
BLAST of MS023305 vs. TAIR 10
Match: AT1G56200.1 (embryo defective 1303 ) HSP 1 Score: 136.3 bits (342), Expect = 2.0e-32 Identity = 75/119 (63.03%), Postives = 88/119 (73.95%), Query Frame = 0
BLAST of MS023305 vs. TAIR 10
Match: AT1G56200.2 (embryo defective 1303 ) HSP 1 Score: 136.3 bits (342), Expect = 2.0e-32 Identity = 75/119 (63.03%), Postives = 88/119 (73.95%), Query Frame = 0
BLAST of MS023305 vs. TAIR 10
Match: AT1G30475.1 (BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 148 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 14; Metazoa - 63; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). ) HSP 1 Score: 113.6 bits (283), Expect = 1.4e-25 Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 0
BLAST of MS023305 vs. TAIR 10
Match: AT1G30475.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). ) HSP 1 Score: 113.6 bits (283), Expect = 1.4e-25 Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 0
BLAST of MS023305 vs. TAIR 10
Match: AT1G30475.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). ) HSP 1 Score: 113.6 bits (283), Expect = 1.4e-25 Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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