MS023305.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS023305.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	BEST Arabidopsis thaliana protein match is: embryo defective 1303 .
Location	scaffold101: 553760 .. 555359 (-)
Sequence length	450
RNA-Seq Expression	MS023305.1
Synteny	MS023305.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAGGCCAAGAACTTCCATCTAAGAAGGGATAGTTTCCAACTTCAACCTCTTAATGGAAGGATACAACAAGTGGTTGCTAAAGTGGGACCGCTTTTTCTCAAACCAATTCCATCTATTGGGACAAGGGAAAGTGTTCTATATTCTAGTAGAAAGACCAACGCTTTCACATGTTTTGCTGCTTTGGTGAGTTGGTTCTCCTTCTATTTGTTTGTTTGTTTTTTTTTTTTTTTAATGCTTGCTTCTTTTCTTTTGGCATTGAGTTATATTCTTCTCTTTTTACTTGAAAGTTTCTCCCCTTTGGTAGTTGGTAATAATCTTTTATTAGAAACTTTACGTAAGTATCATGAAATGTACCATCTTAAGCTTAGATGCCAAGGGAGATTATCAAAAGGCTTCCCAATTTGTTGAAATGAGAAATAATTTTATTGGAGGAAGTACAAAATAATAGTAGTTTATAAGGAAGTCATATTGCTTAATCCATCCTTCTTTCTATAACTGCTCCTTGCTTGTTCTTCACTTTACCGTCCTTTGTCTGATAGAGGGATGTTAGATGTTTTGGCTTTTCTTTCCTTGTTAGGTGATTACGTTGTGAATTGGGGGAAGAAGGATTTTTGTTATTGGATACCTAATTCTTCCCATGGGTTACCTTGTAAATCCTTTTTCCTTATTTTGCACAATCCCTCTTCTCCCAGCCTCCCGTTATTTTCCTTGTATCCTCAGGCATTTTTCCTTTCTGTTGGGGCCCCAATGTACTTTCTTTGGAAGGGTGCGTTTGAAGACCTAGATCATATTTTCTAGAACTTTTGGTTCGCTTGCTCAATCTGGGGTAGTTTGGTTCTAGTTTAGCTTGGAACAGAAGTTTTCGCTCTTTGATGGAGGAGGTTCTTTTACACCTGCCCTTTCATGATAAGGGTTGAAACCTTTGGTGTGTTGGATTTTTGCTCTTTTTTGGGGCTTTTAGCTTGAGAGTAGTAGGATTTTTAGAGGGATTGAGAGTTATTAAGATGTTGATCTCGATCATATTCTTTAGAACTGTCATATTTGAGTTTTTGTCTAAAGTTGAGTTGACTAAAGCAAAATAAAAATATTTAATGATGCACTTTGTCTGCAGAATGCTAGATGTGCAGCGGAGCAGACCCAAACAGTTACAAGAGAGGCTCCCACAATCACTGTTCTTCCTGGTAACAATCACCTACAGATTTTATGAATACTAGTAACTTTTAACATGGTCCGAAAATCGATCTCTCAAGCAGAACTCCATTGTCTGTCTCTCCTTGAAAATAAGTTGCATCGCTATGCTTTTGTTGATTTGTCTTTCTCCCTCTCAAACACACACAGCGTTGGCTTAGGCACTATCACAATTTCGGCTGTTGCTTTAAGCATTATATTTCCGAAAATTTCAGGCAAGGAGAAGTCACCGCAACTGGATGATGGTGATTCTGGCTTTCCACCTCGTGATGATGGTGATGGCGGTGGGGGAGGTGGCGGTGGCGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTCGGCTTCCTTGCTTTTCTAGGCTTCTTGAAAGATAAAGAAAGTGAAGGGCCTTATCAGAATGATAGGAGAAGA

mRNA sequence

ACAAAGGCCAAGAACTTCCATCTAAGAAGGGATAGTTTCCAACTTCAACCTCTTAATGGAAGGATACAACAAGTGGTTGCTAAAGTGGGACCGCTTTTTCTCAAACCAATTCCATCTATTGGGACAAGGGAAAGTGTTCTATATTCTAGTAGAAAGACCAACGCTTTCACATGTTTTGCTGCTTTGAATGCTAGATGTGCAGCGGAGCAGACCCAAACAGTTACAAGAGAGGCTCCCACAATCACTGTTCTTCCTGGCAAGGAGAAGTCACCGCAACTGGATGATGGTGATTCTGGCTTTCCACCTCGTGATGATGGTGATGGCGGTGGGGGAGGTGGCGGTGGCGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTCGGCTTCCTTGCTTTTCTAGGCTTCTTGAAAGATAAAGAAAGTGAAGGGCCTTATCAGAATGATAGGAGAAGA

Coding sequence (CDS)

ACAAAGGCCAAGAACTTCCATCTAAGAAGGGATAGTTTCCAACTTCAACCTCTTAATGGAAGGATACAACAAGTGGTTGCTAAAGTGGGACCGCTTTTTCTCAAACCAATTCCATCTATTGGGACAAGGGAAAGTGTTCTATATTCTAGTAGAAAGACCAACGCTTTCACATGTTTTGCTGCTTTGAATGCTAGATGTGCAGCGGAGCAGACCCAAACAGTTACAAGAGAGGCTCCCACAATCACTGTTCTTCCTGGCAAGGAGAAGTCACCGCAACTGGATGATGGTGATTCTGGCTTTCCACCTCGTGATGATGGTGATGGCGGTGGGGGAGGTGGCGGTGGCGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTCGGCTTCCTTGCTTTTCTAGGCTTCTTGAAAGATAAAGAAAGTGAAGGGCCTTATCAGAATGATAGGAGAAGA

Protein sequence

TKAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

Homology

[Close]

BLAST of MS023305.1 vs. NCBI nr
Match: XP_022143520.1 (uncharacterized protein LOC111013392 [Momordica charantia])

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   TKAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFA 60
           TKAKNFHL RDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFA
Sbjct: 25  TKAKNFHLGRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFA 84

Query: 61  ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS 120
           ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS
Sbjct: 85  ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS 144

Query: 121 GGFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GGFFFFGFLAFLGFLKDKESEGPYQNDRRR
Sbjct: 145 GGFFFFGFLAFLGFLKDKESEGPYQNDRRR 174

[Close]

BLAST of MS023305.1 vs. NCBI nr
Match: XP_023540533.1 (uncharacterized protein LOC111800870 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.6 bits (649), Expect = 5.3e-64
Identity = 130/149 (87.25%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 2   KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAA 61
           +A NFHL RDSFQ+Q  NGR Q V+AK GPL++KPI S GTR  VLYSSRK NAF CFAA
Sbjct: 26  EAMNFHLSRDSFQVQTSNGRRQPVIAKAGPLYVKPILSTGTRGGVLYSSRKNNAFVCFAA 85

Query: 62  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 121
           LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG
Sbjct: 86  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 145

Query: 122 GFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GFFFFGFLAFLGFLKDKESE PYQNDRRR
Sbjct: 146 GFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of MS023305.1 vs. NCBI nr
Match: KAG6596785.1 (Protein YELLOW LEAF 1, choloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251.1 bits (640), Expect = 5.9e-63
Identity = 129/149 (86.58%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 2   KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAA 61
           KA NFHL RDSFQ++  NGR Q V+AK GPL++KPI S G R  VLYSSRK NAF CFAA
Sbjct: 26  KAINFHLSRDSFQVRTSNGRRQPVIAKAGPLYVKPILSTGKRGGVLYSSRKNNAFICFAA 85

Query: 62  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 121
           LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG
Sbjct: 86  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 145

Query: 122 GFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GFFFFGFLAFLGFLKDKESE PYQNDRRR
Sbjct: 146 GFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of MS023305.1 vs. NCBI nr
Match: XP_023005574.1 (uncharacterized protein LOC111498519 isoform X1 [Cucurbita maxima] >XP_023005575.1 uncharacterized protein LOC111498519 isoform X1 [Cucurbita maxima] >XP_023005577.1 uncharacterized protein LOC111498519 isoform X2 [Cucurbita maxima])

HSP 1 Score: 250.8 bits (639), Expect = 7.7e-63
Identity = 129/149 (86.58%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 2   KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAA 61
           KA NFHL RDSFQ++  NGR Q V+AK GPL++KPI S GT   VLYSSRK NAF CFAA
Sbjct: 26  KAINFHLSRDSFQVKTSNGRRQPVIAKAGPLYVKPILSTGTGGGVLYSSRKNNAFICFAA 85

Query: 62  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 121
           LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG
Sbjct: 86  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 145

Query: 122 GFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GFFFFGFLAFLGFLKDKESE PYQNDRRR
Sbjct: 146 GFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of MS023305.1 vs. NCBI nr
Match: XP_022949842.1 (uncharacterized protein LOC111453117 [Cucurbita moschata] >XP_022949851.1 uncharacterized protein LOC111453117 [Cucurbita moschata])

HSP 1 Score: 248.4 bits (633), Expect = 3.8e-62
Identity = 128/149 (85.91%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 2   KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAA 61
           KA NFHL  DSFQ++  NGR Q V+AK GPL++KPI S G R  VLYSSRK NAF CFAA
Sbjct: 26  KAINFHLSGDSFQVRTSNGRRQPVIAKAGPLYVKPILSTGKRGGVLYSSRKNNAFICFAA 85

Query: 62  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 121
           LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG
Sbjct: 86  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 145

Query: 122 GFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GFFFFGFLAFLGFLKDKESE PYQNDRRR
Sbjct: 146 GFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of MS023305.1 vs. ExPASy Swiss-Prot
Match: Q0E3V2 (Protein YELLOW LEAF 1, choloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=YL1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 57  TCFAALNARCAAEQTQTVTRE------APTITVLPGKEKSPQLDDGDSGFPPRDDGDGGG 116
           +C A++   C A QTQT  R+      +P    +  K +SP+LDDG +GFPP   G GGG
Sbjct: 57  SCEASMRITCCANQTQTARRKSFSGPTSPPSGSVKEKVRSPKLDDGGTGFPPFRFGGGGG 116

Query: 117 GGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GGGGGG N +GGF  F  +  L +L  +E E   QN  RR
Sbjct: 117 GGGGGGSNSAGGFILFVIVLLLDYL--REFERNLQNGTRR 154

[Close]

BLAST of MS023305.1 vs. ExPASy Swiss-Prot
Match: F1SZ44 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 63  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG- 122
           + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG 
Sbjct: 49  SVRCNATQTQSAQRKSSTATVKRSDPKGKTQGPKLDDGSGGFPPFRFGKGGGGGGGGGGG 108

Query: 123 -NWSGGFFFFGFLAFLGFLKDKE 140
            N+ GGF  F  +  L +LK+ E
Sbjct: 109 SNYFGGFLLFTCVLLLDYLKEFE 131

[Close]

BLAST of MS023305.1 vs. ExPASy Swiss-Prot
Match: F1SZ42 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.6e-08
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 63  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG- 122
           + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG 
Sbjct: 49  SVRCNATQTQSAQRKSSTATVKRSDPKGKIQGPKLDDGSGGFPPFRFGKGGGGGGGGGGG 108

Query: 123 -NWSGGFFFFGFLAFLGFLKDKE 140
            N+ GGF  F  +  L +LK+ E
Sbjct: 109 SNYFGGFLLFTCVLLLDYLKEFE 131

[Close]

BLAST of MS023305.1 vs. ExPASy Swiss-Prot
Match: F1SZ41 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RF2 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.6e-08
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 63  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG- 122
           + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG 
Sbjct: 49  SVRCNATQTQSAQRKSSTATVKRSDPKGKIQGPKLDDGSGGFPPFRFGKGGGGGGGGGGG 108

Query: 123 -NWSGGFFFFGFLAFLGFLKDKE 140
            N+ GGF  F  +  L +LK+ E
Sbjct: 109 SNYFGGFLLFTCVLLLDYLKEFE 131

[Close]

BLAST of MS023305.1 vs. ExPASy TrEMBL
Match: A0A6J1CP11 (uncharacterized protein LOC111013392 OS=Momordica charantia OX=3673 GN=LOC111013392 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.5e-76
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   TKAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFA 60
           TKAKNFHL RDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFA
Sbjct: 25  TKAKNFHLGRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFA 84

Query: 61  ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS 120
           ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS
Sbjct: 85  ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS 144

Query: 121 GGFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GGFFFFGFLAFLGFLKDKESEGPYQNDRRR
Sbjct: 145 GGFFFFGFLAFLGFLKDKESEGPYQNDRRR 174

[Close]

BLAST of MS023305.1 vs. ExPASy TrEMBL
Match: A0A6J1KZM4 (uncharacterized protein LOC111498519 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498519 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.7e-63
Identity = 129/149 (86.58%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 2   KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAA 61
           KA NFHL RDSFQ++  NGR Q V+AK GPL++KPI S GT   VLYSSRK NAF CFAA
Sbjct: 26  KAINFHLSRDSFQVKTSNGRRQPVIAKAGPLYVKPILSTGTGGGVLYSSRKNNAFICFAA 85

Query: 62  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 121
           LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG
Sbjct: 86  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 145

Query: 122 GFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GFFFFGFLAFLGFLKDKESE PYQNDRRR
Sbjct: 146 GFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of MS023305.1 vs. ExPASy TrEMBL
Match: A0A6J1GD79 (uncharacterized protein LOC111453117 OS=Cucurbita moschata OX=3662 GN=LOC111453117 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62
Identity = 128/149 (85.91%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 2   KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAA 61
           KA NFHL  DSFQ++  NGR Q V+AK GPL++KPI S G R  VLYSSRK NAF CFAA
Sbjct: 26  KAINFHLSGDSFQVRTSNGRRQPVIAKAGPLYVKPILSTGKRGGVLYSSRKNNAFICFAA 85

Query: 62  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 121
           LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG
Sbjct: 86  LNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSG 145

Query: 122 GFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GFFFFGFLAFLGFLKDKESE PYQNDRRR
Sbjct: 146 GFFFFGFLAFLGFLKDKESEEPYQNDRRR 174

[Close]

BLAST of MS023305.1 vs. ExPASy TrEMBL
Match: A0A6J1F258 (uncharacterized protein LOC111438781 OS=Cucurbita moschata OX=3662 GN=LOC111438781 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.1e-62
Identity = 128/150 (85.33%), Postives = 135/150 (90.00%), Query Frame = 0


Query: 2   KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRK-TNAFTCFA 61
           K K+F LRRDS QLQ  NGR Q V+AK GP+FLKPIPS GT+  VLYS+RK  NAF CFA
Sbjct: 26  KGKDFLLRRDSVQLQTPNGRRQSVIAKAGPVFLKPIPSTGTKGGVLYSTRKNNNAFICFA 85

Query: 62  ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS 121
           ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS
Sbjct: 86  ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS 145

Query: 122 GGFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GGFFFFGFLAFLGFLKDKESEG Y++DRRR
Sbjct: 146 GGFFFFGFLAFLGFLKDKESEGAYEDDRRR 175

[Close]

BLAST of MS023305.1 vs. ExPASy TrEMBL
Match: A0A6J1HQC3 (uncharacterized protein LOC111465127 OS=Cucurbita maxima OX=3661 GN=LOC111465127 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.5e-61
Identity = 127/150 (84.67%), Postives = 134/150 (89.33%), Query Frame = 0


Query: 2   KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRK-TNAFTCFA 61
           K K+F LRRDS QLQ  NGR Q V+AK GP+FLKPIPS GT+   LYS+RK  NAF CFA
Sbjct: 26  KVKDFLLRRDSVQLQTPNGRRQSVIAKAGPVFLKPIPSTGTKGGFLYSTRKNNNAFICFA 85

Query: 62  ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS 121
           ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS
Sbjct: 86  ALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWS 145

Query: 122 GGFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
           GGFFFFGFLAFLGFLKDKESEG Y++DRRR
Sbjct: 146 GGFFFFGFLAFLGFLKDKESEGSYEDDRRR 175

[Close]

BLAST of MS023305.1 vs. TAIR 10
Match: AT1G56200.1 (embryo defective 1303 )

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-32
Identity = 75/119 (63.03%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 34  LKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSP 93
           + P+ ++G    +   SR+ +   C +A+NA+C+  QTQTVTRE+PTIT  P   KEKSP
Sbjct: 39  VSPLSAVGLSSGL--GSRRKSLLICHSAINAKCSEGQTQTVTRESPTITQAPVHSKEKSP 98

Query: 94  QLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
            LDDG  GFPPRDDGD GGGGGGGGGNWSGGFFFFGFLAFLG LKDKE E  Y+  RRR
Sbjct: 99  SLDDGGDGFPPRDDGD-GGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEGEEDYRGSRRR 154

[Close]

BLAST of MS023305.1 vs. TAIR 10
Match: AT1G56200.2 (embryo defective 1303 )

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-32
Identity = 75/119 (63.03%), Postives = 88/119 (73.95%), Query Frame = 0


Query: 34  LKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSP 93
           + P+ ++G    +   SR+ +   C +A+NA+C+  QTQTVTRE+PTIT  P   KEKSP
Sbjct: 36  VSPLSAVGLSSGL--GSRRKSLLICHSAINAKCSEGQTQTVTRESPTITQAPVHSKEKSP 95

Query: 94  QLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR 151
            LDDG  GFPPRDDGD GGGGGGGGGNWSGGFFFFGFLAFLG LKDKE E  Y+  RRR
Sbjct: 96  SLDDGGDGFPPRDDGD-GGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEGEEDYRGSRRR 151

[Close]

BLAST of MS023305.1 vs. TAIR 10
Match: AT1G30475.1 (BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 148 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 14; Metazoa - 63; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-25
Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 44  ESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFP 103
           + V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFP
Sbjct: 88  QPVVVSKNKRPVFACNSALNSKCSQGQTQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFP 147

Query: 104 PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE 142
           PRDDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Sbjct: 148 PRDDG-GGGGGGGGGGSSSGGFFLFGFLLFMGYLKDLEGE 186

[Close]

BLAST of MS023305.1 vs. TAIR 10
Match: AT1G30475.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-25
Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 44  ESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFP 103
           + V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFP
Sbjct: 59  QPVVVSKNKRPVFACNSALNSKCSQGQTQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFP 118

Query: 104 PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE 142
           PRDDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Sbjct: 119 PRDDG-GGGGGGGGGGSSSGGFFLFGFLLFMGYLKDLEGE 157

[Close]

BLAST of MS023305.1 vs. TAIR 10
Match: AT1G30475.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-25
Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 44  ESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFP 103
           + V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFP
Sbjct: 59  QPVVVSKNKRPVFACNSALNSKCSQGQTQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFP 118

Query: 104 PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE 142
           PRDDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Sbjct: 119 PRDDG-GGGGGGGGGGSSSGGFFLFGFLLFMGYLKDLEGE 157

The following BLAST results are available for this feature:

BLAST of MS023305.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143520.1	1.8e-75	99.33	uncharacterized protein LOC111013392 [Momordica charantia]	[more]
XP_023540533.1	5.3e-64	87.25	uncharacterized protein LOC111800870 [Cucurbita pepo subsp. pepo]	[more]
KAG6596785.1	5.9e-63	86.58	Protein YELLOW LEAF 1, choloroplastic, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023005574.1	7.7e-63	86.58	uncharacterized protein LOC111498519 isoform X1 [Cucurbita maxima] >XP_023005575...	[more]
XP_022949842.1	3.8e-62	85.91	uncharacterized protein LOC111453117 [Cucurbita moschata] >XP_022949851.1 unchar...	[more]

BLAST of MS023305.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0E3V2	1.5e-08	44.00	Protein YELLOW LEAF 1, choloroplastic OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
F1SZ44	5.6e-08	49.40	Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX...	[more]
F1SZ42	9.6e-08	49.40	Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX...	[more]
F1SZ41	9.6e-08	49.40	Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. indica OX=3...	[more]

BLAST of MS023305.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP11	8.5e-76	99.33	uncharacterized protein LOC111013392 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1KZM4	3.7e-63	86.58	uncharacterized protein LOC111498519 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GD79	1.8e-62	85.91	uncharacterized protein LOC111453117 OS=Cucurbita moschata OX=3662 GN=LOC1114531...	[more]
A0A6J1F258	9.1e-62	85.33	uncharacterized protein LOC111438781 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A6J1HQC3	3.5e-61	84.67	uncharacterized protein LOC111465127 OS=Cucurbita maxima OX=3661 GN=LOC111465127...	[more]

BLAST of MS023305.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56200.1	2.0e-32	63.03	embryo defective 1303	[more]
AT1G56200.2	2.0e-32	63.03	embryo defective 1303	[more]
AT1G30475.1	1.4e-25	64.00	BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G5620...	[more]
AT1G30475.2	1.4e-25	64.00	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G30475.3	1.4e-25	64.00	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..116
None	No IPR available	PANTHER	PTHR34938:SF1	PROTEIN FERTILITY RESTORER RF2, MITOCHONDRIAL	coord: 44..149
IPR040299	Protein FERTILITY RESTORER RF2-like	PANTHER	PTHR34938	PROTEIN FERTILITY RESTORER RF2, MITOCHONDRIAL	coord: 44..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS023305	MS023305	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS023305.1-cds	MS023305.1-cds-scaffold101:553760..553953	CDS
MS023305.1-cds	MS023305.1-cds-scaffold101:554176..554245	CDS
MS023305.1-cds	MS023305.1-cds-scaffold101:555174..555359	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS023305.1	MS023305.1-protein	polypeptide