Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAACAGGCTGTGGGAGCTCCCAAAGATCGTCCTAGTAATCTGTACGACTCACAAGAGTTTCACGCGATGATGAGTCATTTGAAGAGGGCCTCACAATTTAGTCCCATGCACTTGTTCAATTCACCATTCTATCGTCAACGTTTAAATCAAATATATAAACAAAGTGCTGATTCCACCAACAGAATCACGTGGCAGCACGAAGCCACCAAGGAGAGGGCTAGGGGGACGGTTTCAAATGTGTCAATTGCTTGGAAGCTATGGAAACAAGTTAAGCAAGGCCTCATGGGCATTCTTCCAAAGAAACATGTCAAG
mRNA sequence
ATGGAAGAACAGGCTGTGGGAGCTCCCAAAGATCGTCCTAGTAATCTGTACGACTCACAAGAGTTTCACGCGATGATGAGTCATTTGAAGAGGGCCTCACAATTTAGTCCCATGCACTTGTTCAATTCACCATTCTATCGTCAACGTTTAAATCAAATATATAAACAAAGTGCTGATTCCACCAACAGAATCACGTGGCAGCACGAAGCCACCAAGGAGAGGGCTAGGGGGACGGTTTCAAATGTGTCAATTGCTTGGAAGCTATGGAAACAAGTTAAGCAAGGCCTCATGGGCATTCTTCCAAAGAAACATGTCAAG
Coding sequence (CDS)
ATGGAAGAACAGGCTGTGGGAGCTCCCAAAGATCGTCCTAGTAATCTGTACGACTCACAAGAGTTTCACGCGATGATGAGTCATTTGAAGAGGGCCTCACAATTTAGTCCCATGCACTTGTTCAATTCACCATTCTATCGTCAACGTTTAAATCAAATATATAAACAAAGTGCTGATTCCACCAACAGAATCACGTGGCAGCACGAAGCCACCAAGGAGAGGGCTAGGGGGACGGTTTCAAATGTGTCAATTGCTTGGAAGCTATGGAAACAAGTTAAGCAAGGCCTCATGGGCATTCTTCCAAAGAAACATGTCAAG
Protein sequence
MEEQAVGAPKDRPSNLYDSQEFHAMMSHLKRASQFSPMHLFNSPFYRQRLNQIYKQSADSTNRITWQHEATKERARGTVSNVSIAWKLWKQVKQGLMGILPKKHVK
Homology
BLAST of MS002024 vs. NCBI nr
Match:
KGN53885.1 (hypothetical protein Csa_011823 [Cucumis sativus])
HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 69/120 (57.50%), Postives = 80/120 (66.67%), Query Frame = 0
Query: 1 MEEQAVGAPKDRPSNLYDSQEFHAMMSHLKRASQFSPM----HLFNSPFYRQRLNQIYKQ 60
MEEQ GAPKD SNLYD QEF AM+ HL +A+ FSP HL NSPFYRQRLN+IYK
Sbjct: 1 MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60
Query: 61 SADSTNRITWQH--------EATKERA--RGTVSNVSIAWKLWKQVKQGLMGILPKKHVK 107
S ST +I W E +K R RG +SN S+A +LWKQ+K GLMGILPKK +K
Sbjct: 61 SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120
BLAST of MS002024 vs. NCBI nr
Match:
KAF4392625.1 (hypothetical protein F8388_003045 [Cannabis sativa])
HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 0
Query: 8 APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLF--NSPFYRQRLNQIYKQSADST 67
+P + S LYDS E HA++ L +A Q FSP +++ NSPFYR+R NQIYK++ +S+
Sbjct: 41 SPNYKGSTLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNPNSPFYRKRQNQIYKENKESS 100
Query: 68 NRITWQHEATKERARGTVSNVS---------IAWKLWKQVKQGLM 98
++T + ++ G+ S S + +LWK+VKQGL+
Sbjct: 101 KKLTLSNLSSASILDGSKSRYSRGAWVVTREVVTRLWKKVKQGLL 145
BLAST of MS002024 vs. NCBI nr
Match:
KAF4403081.1 (hypothetical protein G4B88_027852 [Cannabis sativa])
HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 0
Query: 8 APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLF--NSPFYRQRLNQIYKQSADST 67
+P + S LYDS E HA++ L +A Q FSP +++ NSPFYR+R NQIYK++ +S+
Sbjct: 41 SPNYKGSTLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNPNSPFYRKRHNQIYKENKESS 100
Query: 68 NRITWQHEATKERARGTVSNVSI-AW--------KLWKQVKQGLM 98
++T + ++ G+ S S AW +LWK+VKQGL+
Sbjct: 101 KKLTLSNLSSASILDGSKSRYSRGAWVVTRGVMTRLWKKVKQGLL 145
BLAST of MS002024 vs. NCBI nr
Match:
PON68950.1 (hypothetical protein PanWU01x14_092670 [Parasponia andersonii])
HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 0
Query: 8 APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLFN--SPFYRQRLNQIYKQSADST 67
+P + S+LYDS E A++ L +A Q FSP +++N SPFYR+RLN+IY+++ +S
Sbjct: 40 SPNYKGSSLYDSYELQAVVHQLNKAIQGSKAFSPPYIYNLKSPFYRKRLNRIYRENRESP 99
Query: 68 NRITWQHEATKERARGTVSNVSIAW--------KLWKQVKQGL 97
+T + ++ SN AW +LW++VK+GL
Sbjct: 100 KTLTCSNLSSSTTLDDITSNRG-AWMVTRGVVTRLWEKVKRGL 141
BLAST of MS002024 vs. NCBI nr
Match:
PON70340.1 (hypothetical protein TorRG33x02_257060 [Trema orientale])
HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 0
Query: 8 APKDRPSNLYDSQEFHAMMSHLKRA----SQFSPMHLFN--SPFYRQRLNQIYKQSADST 67
+P + S+LYDS E A++ L +A FSP +++N SPFYR+RLN+IY+++ +S
Sbjct: 40 SPNYKGSSLYDSYELQAVVHQLNKAIRGSKAFSPPYIYNLKSPFYRKRLNRIYRENKESP 99
Query: 68 NRITWQHEATKERARGTVSNVSIAW--------KLWKQVKQGL 97
+T + ++ + ++ AW +LW++VK+GL
Sbjct: 100 KTLTCSNVSSSTILDDSKTSNRGAWMVTRGVVTRLWEKVKRGL 142
BLAST of MS002024 vs. ExPASy TrEMBL
Match:
A0A0A0KW83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179690 PE=4 SV=1)
HSP 1 Score: 123.6 bits (309), Expect = 4.8e-25
Identity = 69/120 (57.50%), Postives = 80/120 (66.67%), Query Frame = 0
Query: 1 MEEQAVGAPKDRPSNLYDSQEFHAMMSHLKRASQFSPM----HLFNSPFYRQRLNQIYKQ 60
MEEQ GAPKD SNLYD QEF AM+ HL +A+ FSP HL NSPFYRQRLN+IYK
Sbjct: 1 MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60
Query: 61 SADSTNRITWQH--------EATKERA--RGTVSNVSIAWKLWKQVKQGLMGILPKKHVK 107
S ST +I W E +K R RG +SN S+A +LWKQ+K GLMGILPKK +K
Sbjct: 61 SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120
BLAST of MS002024 vs. ExPASy TrEMBL
Match:
A0A7J6HC11 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003045 PE=4 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 7.0e-08
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 0
Query: 8 APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLF--NSPFYRQRLNQIYKQSADST 67
+P + S LYDS E HA++ L +A Q FSP +++ NSPFYR+R NQIYK++ +S+
Sbjct: 41 SPNYKGSTLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNPNSPFYRKRQNQIYKENKESS 100
Query: 68 NRITWQHEATKERARGTVSNVS---------IAWKLWKQVKQGLM 98
++T + ++ G+ S S + +LWK+VKQGL+
Sbjct: 101 KKLTLSNLSSASILDGSKSRYSRGAWVVTREVVTRLWKKVKQGLL 145
BLAST of MS002024 vs. ExPASy TrEMBL
Match:
A0A803P9L1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 7.0e-08
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 0
Query: 8 APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLF--NSPFYRQRLNQIYKQSADST 67
+P + S LYDS E HA++ L +A Q FSP +++ NSPFYR+R NQIYK++ +S+
Sbjct: 41 SPNYKGSTLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNPNSPFYRKRQNQIYKENKESS 100
Query: 68 NRITWQHEATKERARGTVSNVS---------IAWKLWKQVKQGLM 98
++T + ++ G+ S S + +LWK+VKQGL+
Sbjct: 101 KKLTLSNLSSASILDGSKSRYSRGAWVVTREVVTRLWKKVKQGLL 145
BLAST of MS002024 vs. ExPASy TrEMBL
Match:
A0A7J6I7R6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027852 PE=4 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 9.2e-08
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 0
Query: 8 APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLF--NSPFYRQRLNQIYKQSADST 67
+P + S LYDS E HA++ L +A Q FSP +++ NSPFYR+R NQIYK++ +S+
Sbjct: 41 SPNYKGSTLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNPNSPFYRKRHNQIYKENKESS 100
Query: 68 NRITWQHEATKERARGTVSNVSI-AW--------KLWKQVKQGLM 98
++T + ++ G+ S S AW +LWK+VKQGL+
Sbjct: 101 KKLTLSNLSSASILDGSKSRYSRGAWVVTRGVMTRLWKKVKQGLL 145
BLAST of MS002024 vs. ExPASy TrEMBL
Match:
A0A2P5D6L7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_092670 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 5.6e-05
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 0
Query: 8 APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLFN--SPFYRQRLNQIYKQSADST 67
+P + S+LYDS E A++ L +A Q FSP +++N SPFYR+RLN+IY+++ +S
Sbjct: 40 SPNYKGSSLYDSYELQAVVHQLNKAIQGSKAFSPPYIYNLKSPFYRKRLNRIYRENRESP 99
Query: 68 NRITWQHEATKERARGTVSNVSIAW--------KLWKQVKQGL 97
+T + ++ SN AW +LW++VK+GL
Sbjct: 100 KTLTCSNLSSSTTLDDITSNRG-AWMVTRGVVTRLWEKVKRGL 141
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN53885.1 | 1.0e-24 | 57.50 | hypothetical protein Csa_011823 [Cucumis sativus] | [more] |
| KAF4392625.1 | 1.4e-07 | 38.10 | hypothetical protein F8388_003045 [Cannabis sativa] | [more] |
| KAF4403081.1 | 1.9e-07 | 40.00 | hypothetical protein G4B88_027852 [Cannabis sativa] | [more] |
| PON68950.1 | 1.1e-04 | 35.92 | hypothetical protein PanWU01x14_092670 [Parasponia andersonii] | [more] |
| PON70340.1 | 5.7e-04 | 33.01 | hypothetical protein TorRG33x02_257060 [Trema orientale] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KW83 | 4.8e-25 | 57.50 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179690 PE=4 SV=1 | [more] |
| A0A7J6HC11 | 7.0e-08 | 38.10 | Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003045 PE=4 SV=1 | [more] |
| A0A803P9L1 | 7.0e-08 | 38.10 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
| A0A7J6I7R6 | 9.2e-08 | 40.00 | Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027852 PE=4 SV=1 | [more] |
| A0A2P5D6L7 | 5.6e-05 | 35.92 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_092670 PE... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
