MS002024.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002024.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold30: 1858367 .. 1858684 (+)
Sequence length	318
RNA-Seq Expression	MS002024.1
Synteny	MS002024.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACAGGCTGTGGGAGCTCCCAAAGATCGTCCTAGTAATCTGTACGACTCACAAGAGTTTCACGCGATGATGAGTCATTTGAAGAGGGCCTCACAATTTAGTCCCATGCACTTGTTCAATTCACCATTCTATCGTCAACGTTTAAATCAAATATATAAACAAAGTGCTGATTCCACCAACAGAATCACGTGGCAGCACGAAGCCACCAAGGAGAGGGCTAGGGGGACGGTTTCAAATGTGTCAATTGCTTGGAAGCTATGGAAACAAGTTAAGCAAGGCCTCATGGGCATTCTTCCAAAGAAACATGTCAAG

mRNA sequence

ATGGAAGAACAGGCTGTGGGAGCTCCCAAAGATCGTCCTAGTAATCTGTACGACTCACAAGAGTTTCACGCGATGATGAGTCATTTGAAGAGGGCCTCACAATTTAGTCCCATGCACTTGTTCAATTCACCATTCTATCGTCAACGTTTAAATCAAATATATAAACAAAGTGCTGATTCCACCAACAGAATCACGTGGCAGCACGAAGCCACCAAGGAGAGGGCTAGGGGGACGGTTTCAAATGTGTCAATTGCTTGGAAGCTATGGAAACAAGTTAAGCAAGGCCTCATGGGCATTCTTCCAAAGAAACATGTCAAG

Coding sequence (CDS)

ATGGAAGAACAGGCTGTGGGAGCTCCCAAAGATCGTCCTAGTAATCTGTACGACTCACAAGAGTTTCACGCGATGATGAGTCATTTGAAGAGGGCCTCACAATTTAGTCCCATGCACTTGTTCAATTCACCATTCTATCGTCAACGTTTAAATCAAATATATAAACAAAGTGCTGATTCCACCAACAGAATCACGTGGCAGCACGAAGCCACCAAGGAGAGGGCTAGGGGGACGGTTTCAAATGTGTCAATTGCTTGGAAGCTATGGAAACAAGTTAAGCAAGGCCTCATGGGCATTCTTCCAAAGAAACATGTCAAG

Protein sequence

MEEQAVGAPKDRPSNLYDSQEFHAMMSHLKRASQFSPMHLFNSPFYRQRLNQIYKQSADSTNRITWQHEATKERARGTVSNVSIAWKLWKQVKQGLMGILPKKHVK

Homology

[Close]

BLAST of MS002024.1 vs. NCBI nr
Match: KGN53885.1 (hypothetical protein Csa_011823 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 69/120 (57.50%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 1   MEEQAVGAPKDRPSNLYDSQEFHAMMSHLKRASQFSPM----HLFNSPFYRQRLNQIYKQ 60
           MEEQ  GAPKD  SNLYD QEF AM+ HL +A+ FSP     HL NSPFYRQRLN+IYK 
Sbjct: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60

Query: 61  SADSTNRITWQH--------EATKERA--RGTVSNVSIAWKLWKQVKQGLMGILPKKHVK 107
           S  ST +I W          E +K R   RG +SN S+A +LWKQ+K GLMGILPKK +K
Sbjct: 61  SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120

[Close]

BLAST of MS002024.1 vs. NCBI nr
Match: KAF4392625.1 (hypothetical protein F8388_003045 [Cannabis sativa])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 8   APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLF--NSPFYRQRLNQIYKQSADST 67
           +P  + S LYDS E HA++  L +A Q    FSP +++  NSPFYR+R NQIYK++ +S+
Sbjct: 41  SPNYKGSTLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNPNSPFYRKRQNQIYKENKESS 100

Query: 68  NRITWQHEATKERARGTVSNVS---------IAWKLWKQVKQGLM 98
            ++T  + ++     G+ S  S         +  +LWK+VKQGL+
Sbjct: 101 KKLTLSNLSSASILDGSKSRYSRGAWVVTREVVTRLWKKVKQGLL 145

[Close]

BLAST of MS002024.1 vs. NCBI nr
Match: KAF4403081.1 (hypothetical protein G4B88_027852 [Cannabis sativa])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 8   APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLF--NSPFYRQRLNQIYKQSADST 67
           +P  + S LYDS E HA++  L +A Q    FSP +++  NSPFYR+R NQIYK++ +S+
Sbjct: 41  SPNYKGSTLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNPNSPFYRKRHNQIYKENKESS 100

Query: 68  NRITWQHEATKERARGTVSNVSI-AW--------KLWKQVKQGLM 98
            ++T  + ++     G+ S  S  AW        +LWK+VKQGL+
Sbjct: 101 KKLTLSNLSSASILDGSKSRYSRGAWVVTRGVMTRLWKKVKQGLL 145

[Close]

BLAST of MS002024.1 vs. NCBI nr
Match: PON68950.1 (hypothetical protein PanWU01x14_092670 [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 8   APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLFN--SPFYRQRLNQIYKQSADST 67
           +P  + S+LYDS E  A++  L +A Q    FSP +++N  SPFYR+RLN+IY+++ +S 
Sbjct: 40  SPNYKGSSLYDSYELQAVVHQLNKAIQGSKAFSPPYIYNLKSPFYRKRLNRIYRENRESP 99

Query: 68  NRITWQHEATKERARGTVSNVSIAW--------KLWKQVKQGL 97
             +T  + ++        SN   AW        +LW++VK+GL
Sbjct: 100 KTLTCSNLSSSTTLDDITSNRG-AWMVTRGVVTRLWEKVKRGL 141

[Close]

BLAST of MS002024.1 vs. NCBI nr
Match: PON70340.1 (hypothetical protein TorRG33x02_257060 [Trema orientale])

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 8   APKDRPSNLYDSQEFHAMMSHLKRA----SQFSPMHLFN--SPFYRQRLNQIYKQSADST 67
           +P  + S+LYDS E  A++  L +A      FSP +++N  SPFYR+RLN+IY+++ +S 
Sbjct: 40  SPNYKGSSLYDSYELQAVVHQLNKAIRGSKAFSPPYIYNLKSPFYRKRLNRIYRENKESP 99

Query: 68  NRITWQHEATKERARGTVSNVSIAW--------KLWKQVKQGL 97
             +T  + ++      + ++   AW        +LW++VK+GL
Sbjct: 100 KTLTCSNVSSSTILDDSKTSNRGAWMVTRGVVTRLWEKVKRGL 142

[Close]

BLAST of MS002024.1 vs. ExPASy TrEMBL
Match: A0A0A0KW83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179690 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.8e-25
Identity = 69/120 (57.50%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 1   MEEQAVGAPKDRPSNLYDSQEFHAMMSHLKRASQFSPM----HLFNSPFYRQRLNQIYKQ 60
           MEEQ  GAPKD  SNLYD QEF AM+ HL +A+ FSP     HL NSPFYRQRLN+IYK 
Sbjct: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60

Query: 61  SADSTNRITWQH--------EATKERA--RGTVSNVSIAWKLWKQVKQGLMGILPKKHVK 107
           S  ST +I W          E +K R   RG +SN S+A +LWKQ+K GLMGILPKK +K
Sbjct: 61  SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120

[Close]

BLAST of MS002024.1 vs. ExPASy TrEMBL
Match: A0A7J6HC11 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003045 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.0e-08
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 8   APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLF--NSPFYRQRLNQIYKQSADST 67
           +P  + S LYDS E HA++  L +A Q    FSP +++  NSPFYR+R NQIYK++ +S+
Sbjct: 41  SPNYKGSTLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNPNSPFYRKRQNQIYKENKESS 100

Query: 68  NRITWQHEATKERARGTVSNVS---------IAWKLWKQVKQGLM 98
            ++T  + ++     G+ S  S         +  +LWK+VKQGL+
Sbjct: 101 KKLTLSNLSSASILDGSKSRYSRGAWVVTREVVTRLWKKVKQGLL 145

[Close]

BLAST of MS002024.1 vs. ExPASy TrEMBL
Match: A0A803P9L1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.0e-08
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 8   APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLF--NSPFYRQRLNQIYKQSADST 67
           +P  + S LYDS E HA++  L +A Q    FSP +++  NSPFYR+R NQIYK++ +S+
Sbjct: 41  SPNYKGSTLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNPNSPFYRKRQNQIYKENKESS 100

Query: 68  NRITWQHEATKERARGTVSNVS---------IAWKLWKQVKQGLM 98
            ++T  + ++     G+ S  S         +  +LWK+VKQGL+
Sbjct: 101 KKLTLSNLSSASILDGSKSRYSRGAWVVTREVVTRLWKKVKQGLL 145

[Close]

BLAST of MS002024.1 vs. ExPASy TrEMBL
Match: A0A7J6I7R6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027852 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.2e-08
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 8   APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLF--NSPFYRQRLNQIYKQSADST 67
           +P  + S LYDS E HA++  L +A Q    FSP +++  NSPFYR+R NQIYK++ +S+
Sbjct: 41  SPNYKGSTLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNPNSPFYRKRHNQIYKENKESS 100

Query: 68  NRITWQHEATKERARGTVSNVSI-AW--------KLWKQVKQGLM 98
            ++T  + ++     G+ S  S  AW        +LWK+VKQGL+
Sbjct: 101 KKLTLSNLSSASILDGSKSRYSRGAWVVTRGVMTRLWKKVKQGLL 145

[Close]

BLAST of MS002024.1 vs. ExPASy TrEMBL
Match: A0A2P5D6L7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_092670 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.6e-05
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 8   APKDRPSNLYDSQEFHAMMSHLKRASQ----FSPMHLFN--SPFYRQRLNQIYKQSADST 67
           +P  + S+LYDS E  A++  L +A Q    FSP +++N  SPFYR+RLN+IY+++ +S 
Sbjct: 40  SPNYKGSSLYDSYELQAVVHQLNKAIQGSKAFSPPYIYNLKSPFYRKRLNRIYRENRESP 99

Query: 68  NRITWQHEATKERARGTVSNVSIAW--------KLWKQVKQGL 97
             +T  + ++        SN   AW        +LW++VK+GL
Sbjct: 100 KTLTCSNLSSSTTLDDITSNRG-AWMVTRGVVTRLWEKVKRGL 141

The following BLAST results are available for this feature:

BLAST of MS002024.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53885.1	1.0e-24	57.50	hypothetical protein Csa_011823 [Cucumis sativus]	[more]
KAF4392625.1	1.4e-07	38.10	hypothetical protein F8388_003045 [Cannabis sativa]	[more]
KAF4403081.1	1.9e-07	40.00	hypothetical protein G4B88_027852 [Cannabis sativa]	[more]
PON68950.1	1.1e-04	35.92	hypothetical protein PanWU01x14_092670 [Parasponia andersonii]	[more]
PON70340.1	5.7e-04	33.01	hypothetical protein TorRG33x02_257060 [Trema orientale]	[more]

BLAST of MS002024.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002024.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW83	4.8e-25	57.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179690 PE=4 SV=1	[more]
A0A7J6HC11	7.0e-08	38.10	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003045 PE=4 SV=1	[more]
A0A803P9L1	7.0e-08	38.10	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7J6I7R6	9.2e-08	40.00	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027852 PE=4 SV=1	[more]
A0A2P5D6L7	5.6e-05	35.92	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_092670 PE...	[more]

BLAST of MS002024.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002024	MS002024	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002024.1-cds	MS002024.1-cds-scaffold30:1858367..1858684	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002024.1	MS002024.1-protein	polypeptide