Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGAACGAAGGGGACGAAGGAGGTGAGCTTGCACAGCTTTGTGGTTCCCACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCAGTGTCTTTCAATGAGAAAGACTTGCGGTAACCGTAAATTTGATAAATCGGTTAATTTGGAAATTTTTTTTTGGTATTGATTTCTAGTTAACTTTTGTTTTTGAATCTGATTTTGGCTTGGATTTTCCTTAGTGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCAGAGAAGCAGCAAGAGGAAGCGCATCAAATTACGCAAAAAGGTTTTAAAAAAAAGTGCTATTTTTCTTAAAAAAACTGATGAAACAGATTTCTTTTTTATTCTTGGGAAGTTAACTTTGGAGAGATATAAAAAGAAAAGGGAAGGAGAAACTACAATGATTGTTCTGCTCTTGAAAAATATGTCTCTGAGCAATACAACTTTTCTAGCCTTTACCGAACTTAGGATTGCACATGAAAATTCTTTTATGGTAGATTTTAGATTGTCCCAAGTTTAAGATTTCCTGGGGATTCTGGAGATCAGGCTAGTTATGAACTAAAGATACCAATTATGTGTAAGGTTAAAGAATTCATTTCAATCTTTAGTTTCATAGGTCACGTCGGGTGTTTAGGAGACTTGCACTTATCTCTCTTTCACAGATCTGCAAGCAATGATGTCTGAACTTAATTCTACGTTCATTGGTATGACAAAATTAGAAGGCATACTTATGCAATTAAGTTTGGGCACCTCTTGAAATGTGGAAACGTCAGATCGTTCCTTTGAGAAAAATTCAAATGGCCTTATGATTTTGACAATAATATCGCCACAAATGACCATAGTTAGGGAGGGTTAGGGAGGTGATTTATGTTATGAGAGACTGCCTAGTAGATTTTCTGTTACTTTTAATTGTGAACCCCTAAACGTTTCTTTTTCTTTTCATCCGGGATTTTTTTCTCTCTTTCGCTTTTATGCATATATCAAATCATTTTTCAACTGAAATGGTCCTATATAGTCATGTATATATTGTATTTTTATCACATAAGTTGTGTAAAATATTATTGACAGAGGAAACAAGAAAGAAAACTGCCTTTTATATTTTTTTTCTGTAGCATATGGGAACTATTATCTGAATGTCTCAAATTATCTCGCAGAGAAAGGAAGAAAAAGAGCTGGTGCTATATGGTGGTGTTCTACCAGCTGATTGGCCGGTTGACAAGCAGAATGATGATCATGAGGATGAGGACGAGGAAGAGAAGTCATTTGCCCCAATTTCTGGTGTTTTACAAAAAAATTCATATTAAACACAAGTCTCTTCAACTAAGCATGATGAAATAAAAGTAATTACAAGTTCGGCTGTCATTATACTATGGGAAGAAAGAAATGTCCATCTTAGAGAATCAGATCAGACATTATTTTTGTTCATAGGGAAGCTAAAAGTGACATTAACAACATTGTCTTCAAGCCTTCAAAATTTTCTTTGTAAAAACTTTGGAACCTGGAGAGTATTTTGCTATTAAACATGAGATTGTTATCTATGTTACAGAGCTACACATCATGTAGTTTTGATCCGAAGGTGTTTGTGGTTTTCTTTGTAGAGATGACGACGTATGACAGTGGTAACATTAAAGTCACGGTGACAACTAGTGAGGTATCTCGTGATGAAAAAATATATCCCATTGACAAGCCACAGACAACAACAAGCCAATTGGTTTCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTAAATAAAGTTGCAAAACAGAAGTCAAGGCTGAAGCCCCGAAGTAAACGAGAGAAAAAGAAGGGAAGAAGAAAGAAA
mRNA sequence
ATGGTGGAGAACGAAGGGGACGAAGGAGGTGAGCTTGCACAGCTTTGTGGTTCCCACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCAGTGTCTTTCAATGAGAAAGACTTGCGTGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCAGAGAAGCAGCAAGAGGAAGCGCATCAAATTACGCAAAAAGGTTTTAAAAAAAAAAAGGAAGAAAAAGAGCTGGTGCTATATGGTGGTGTTCTACCAGCTGATTGGCCGGTTGACAAGCAGAATGATGATCATGAGGATGAGGACGAGGAAGAGAAGTCATTTGCCCCAATTTCTGAGATGACGACGTATGACAGTGGTAACATTAAAGTCACGGTGACAACTAGTGAGGTATCTCGTGATGAAAAAATATATCCCATTGACAAGCCACAGACAACAACAAGCCAATTGGTTTCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTAAATAAAGTTGCAAAACAGAAGTCAAGGCTGAAGCCCCGAAGTAAACGAGAGAAAAAGAAGGGAAGAAGAAAGAAA
Coding sequence (CDS)
ATGGTGGAGAACGAAGGGGACGAAGGAGGTGAGCTTGCACAGCTTTGTGGTTCCCACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCAGTGTCTTTCAATGAGAAAGACTTGCGTGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCAGAGAAGCAGCAAGAGGAAGCGCATCAAATTACGCAAAAAGGTTTTAAAAAAAAAAAGGAAGAAAAAGAGCTGGTGCTATATGGTGGTGTTCTACCAGCTGATTGGCCGGTTGACAAGCAGAATGATGATCATGAGGATGAGGACGAGGAAGAGAAGTCATTTGCCCCAATTTCTGAGATGACGACGTATGACAGTGGTAACATTAAAGTCACGGTGACAACTAGTGAGGTATCTCGTGATGAAAAAATATATCCCATTGACAAGCCACAGACAACAACAAGCCAATTGGTTTCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTAAATAAAGTTGCAAAACAGAAGTCAAGGCTGAAGCCCCGAAGTAAACGAGAGAAAAAGAAGGGAAGAAGAAAGAAA
Protein sequence
MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
Homology
BLAST of MC09g0005.1 vs. NCBI nr
Match:
XP_022157484.1 (ribosomal RNA-processing protein 17-like [Momordica charantia])
HSP 1 Score: 363 bits (931), Expect = 5.44e-126
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY 120
QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY
Sbjct: 61 QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY 120
Query: 121 DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL 180
DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL
Sbjct: 121 DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL 180
Query: 181 KPRSKREKKKGRRKK 195
KPRSKREKKKGRRKK
Sbjct: 181 KPRSKREKKKGRRKK 195
BLAST of MC09g0005.1 vs. NCBI nr
Match:
XP_022142095.1 (ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 ribosomal RNA-processing protein 17-like [Momordica charantia])
HSP 1 Score: 275 bits (703), Expect = 2.87e-91
Identity = 158/196 (80.61%), Postives = 173/196 (88.27%), Query Frame = 0
Query: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MV+N+GDEGGELAQ G HIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAHQITQKGFKKK-KEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTT 120
QEEA + + +KK KEEKELVLYGG+LPAD PVD+QNDDHE+E EEK FAPISE TT
Sbjct: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEE--EEKPFAPISETTT 120
Query: 121 YDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSR 180
YDSGNIKVTV TSEVSRD +I PIDK QT T+QLV+KDKKHNLPITKKKP KVAKQKSR
Sbjct: 121 YDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSR 180
Query: 181 LKPRSKREKKKGRRKK 195
KPRSKR+KKKGR+KK
Sbjct: 181 PKPRSKRDKKKGRKKK 194
BLAST of MC09g0005.1 vs. NCBI nr
Match:
XP_038881021.1 (nucleolar protein 12 [Benincasa hispida])
HSP 1 Score: 257 bits (656), Expect = 6.11e-84
Identity = 149/200 (74.50%), Postives = 170/200 (85.00%), Query Frame = 0
Query: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MV N+G+EG ELAQ HIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQ
Sbjct: 9 MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKRKKKRRKEAKKQ 68
Query: 61 QEEAHQITQKGF---KKKKEEKELVLYGGVLPADWPVDKQNDDHED--EDEEEKSFAPIS 120
QEEA I +K KK++ EK+LVLYGGVLPAD PVD++NDDHE+ EDEEEK AP S
Sbjct: 69 QEEA--IRRKRIEARKKRRLEKDLVLYGGVLPADRPVDEENDDHEEGEEDEEEKPLAPFS 128
Query: 121 EMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAK 180
E TTYDSGNIKVTV TSEVSR+E+I PIDKPQT T+QL +KDKKHNLP+TKKKP KVAK
Sbjct: 129 ETTTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPFKKVAK 188
Query: 181 QKSRLKPRSKREKKKGRRKK 195
Q+SR K RSKR+K+KG++KK
Sbjct: 189 QRSRPKARSKRDKRKGKKKK 206
BLAST of MC09g0005.1 vs. NCBI nr
Match:
XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 253 bits (646), Expect = 1.55e-82
Identity = 148/198 (74.75%), Postives = 169/198 (85.35%), Query Frame = 0
Query: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MV+NE +EGG L Q HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQNDDHED--EDEEEKSFAPISEM 120
QEEA + + + KK+K EKELVL+GGVLPAD PVD+QNDD +D EDEEEK APISE
Sbjct: 61 QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
Query: 121 TTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQK 180
TTYDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LP+TKKKP KVA++K
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
Query: 181 SRLKPRSKREKKKGRRKK 195
SR K RSK +KKKGR+KK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198
BLAST of MC09g0005.1 vs. NCBI nr
Match:
KAG6594625.1 (hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 252 bits (644), Expect = 3.13e-82
Identity = 147/198 (74.24%), Postives = 169/198 (85.35%), Query Frame = 0
Query: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MV+NE +EGG L Q HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQNDDHED--EDEEEKSFAPISEM 120
QEEA + + + KK+K EKELVL+GGVLPAD PVD+QNDD +D EDEEE+ APISE
Sbjct: 61 QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEERPLAPISET 120
Query: 121 TTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQK 180
TTYDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LP+TKKKP KVA++K
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEINPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180
Query: 181 SRLKPRSKREKKKGRRKK 195
SR K RSK +KKKGR+KK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198
BLAST of MC09g0005.1 vs. ExPASy TrEMBL
Match:
A0A6J1DWL6 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111024179 PE=3 SV=1)
HSP 1 Score: 363 bits (931), Expect = 2.64e-126
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY 120
QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY
Sbjct: 61 QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY 120
Query: 121 DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL 180
DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL
Sbjct: 121 DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL 180
Query: 181 KPRSKREKKKGRRKK 195
KPRSKREKKKGRRKK
Sbjct: 181 KPRSKREKKKGRRKK 195
BLAST of MC09g0005.1 vs. ExPASy TrEMBL
Match:
A0A6J1CL67 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111012309 PE=3 SV=1)
HSP 1 Score: 275 bits (703), Expect = 1.39e-91
Identity = 158/196 (80.61%), Postives = 173/196 (88.27%), Query Frame = 0
Query: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MV+N+GDEGGELAQ G HIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAHQITQKGFKKK-KEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTT 120
QEEA + + +KK KEEKELVLYGG+LPAD PVD+QNDDHE+E EEK FAPISE TT
Sbjct: 61 QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEE--EEKPFAPISETTT 120
Query: 121 YDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSR 180
YDSGNIKVTV TSEVSRD +I PIDK QT T+QLV+KDKKHNLPITKKKP KVAKQKSR
Sbjct: 121 YDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSR 180
Query: 181 LKPRSKREKKKGRRKK 195
KPRSKR+KKKGR+KK
Sbjct: 181 PKPRSKRDKKKGRKKK 194
BLAST of MC09g0005.1 vs. ExPASy TrEMBL
Match:
A0A6J1EG67 (ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC111433808 PE=3 SV=1)
HSP 1 Score: 250 bits (638), Expect = 1.24e-81
Identity = 147/198 (74.24%), Postives = 168/198 (84.85%), Query Frame = 0
Query: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MV+NE +EGG L Q HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQNDDHED--EDEEEKSFAPISEM 120
QEEA + + + KK+K EK+LVL+GGVLPAD PVD+QNDD +D EDEEEK APISE
Sbjct: 61 QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
Query: 121 TTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQK 180
T YDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LPITKKKP KVA++K
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
Query: 181 SRLKPRSKREKKKGRRKK 195
SR K RSK +KKKGR+KK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198
BLAST of MC09g0005.1 vs. ExPASy TrEMBL
Match:
A0A6J1KRQ7 (ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 PE=3 SV=1)
HSP 1 Score: 249 bits (636), Expect = 2.49e-81
Identity = 146/198 (73.74%), Postives = 168/198 (84.85%), Query Frame = 0
Query: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MV+NE EGG L Q H+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQNDDHED--EDEEEKSFAPISEM 120
QEEA + + + KK+K EK+LVL+GGVLPAD PVD+QNDD +D EDEEEK APISE
Sbjct: 61 QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120
Query: 121 TTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQK 180
TTYDSGNIKVTVTTSEV R+E+I PIDKPQ +TSQL++KDKKH+LPITKKKP KVA++K
Sbjct: 121 TTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180
Query: 181 SRLKPRSKREKKKGRRKK 195
SR K RSK +KKKGR+KK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198
BLAST of MC09g0005.1 vs. ExPASy TrEMBL
Match:
A0A1S3C1A3 (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3 SV=1)
HSP 1 Score: 244 bits (624), Expect = 1.46e-79
Identity = 144/196 (73.47%), Postives = 164/196 (83.67%), Query Frame = 0
Query: 1 MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
MV+N+G+EGGELAQ HIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1 MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
Query: 61 QEEA-HQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTT 120
+EEA ++ + KK+K EK+LVLYGGVLPAD VD QNDD EDE+EE AP SE T
Sbjct: 61 KEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQEDEEEE--PLAPFSEART 120
Query: 121 YDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSR 180
YD+GN+KVTVTTSEVSR+ +I PIDKPQT +QL+ KDKKHNLPITKKK KVAKQ+SR
Sbjct: 121 YDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSR 180
Query: 181 LKPRSKREKKKGRRKK 195
K RSKR+KKKGR+KK
Sbjct: 181 PKLRSKRDKKKGRKKK 194
BLAST of MC09g0005.1 vs. TAIR 10
Match:
AT1G11240.1 (CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). )
HSP 1 Score: 112.8 bits (281), Expect = 3.0e-25
Identity = 88/191 (46.07%), Postives = 125/191 (65.45%), Query Frame = 0
Query: 7 DEGGELA-QLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAH 66
+E G LA HI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA
Sbjct: 8 EEAGSLATPTSARHIGKRARKNKSLTVSFDEKDLKDFVTGFHKRKKKRRKEAQKQQEEAF 67
Query: 67 QITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTYDSGNI 126
+ + +K ++ +EL++ G D + D+ + EDEE + A S T YD+G +
Sbjct: 68 RRKRIEARKNRKLEELMVAGN--GEDNEDGEAEDEVDAEDEEAEPDASTSATTMYDTGEL 127
Query: 127 KVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDK---KHNLPITKKKPLNKVAKQKSRLKP 186
KVTVTTSE+SR+E+ PI K +T +++ S K K +P+ K KP+ K ++++S K
Sbjct: 128 KVTVTTSEISREEE-EPIRKEKTQSTESGSTAKASTKQPVPVRKTKPM-KQSRRRSTTKT 187
Query: 187 RSKREKKKGRR 194
KR+KKK R
Sbjct: 188 MKKRDKKKQAR 194
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_022157484.1 | 5.44e-126 | 100.00 | ribosomal RNA-processing protein 17-like [Momordica charantia] | [more] |
XP_022142095.1 | 2.87e-91 | 80.61 | ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 r... | [more] |
XP_038881021.1 | 6.11e-84 | 74.50 | nucleolar protein 12 [Benincasa hispida] | [more] |
XP_023517913.1 | 1.55e-82 | 74.75 | ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo] | [more] |
KAG6594625.1 | 3.13e-82 | 74.24 | hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DWL6 | 2.64e-126 | 100.00 | ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC11... | [more] |
A0A6J1CL67 | 1.39e-91 | 80.61 | ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC11... | [more] |
A0A6J1EG67 | 1.24e-81 | 74.24 | ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC11143380... | [more] |
A0A6J1KRQ7 | 2.49e-81 | 73.74 | ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 ... | [more] |
A0A1S3C1A3 | 1.46e-79 | 73.47 | ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3... | [more] |
Match Name | E-value | Identity | Description | |
AT1G11240.1 | 3.0e-25 | 46.07 | CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 ... | [more] |