MC09g0005 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0005
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ribosomal RNA-processing protein 17-like
Location	MC09: 56481 .. 58347 (-)
RNA-Seq Expression	MC09g0005
Synteny	MC09g0005

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGAACGAAGGGGACGAAGGAGGTGAGCTTGCACAGCTTTGTGGTTCCCACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCAGTGTCTTTCAATGAGAAAGACTTGCGGTAACCGTAAATTTGATAAATCGGTTAATTTGGAAATTTTTTTTTGGTATTGATTTCTAGTTAACTTTTGTTTTTGAATCTGATTTTGGCTTGGATTTTCCTTAGTGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCAGAGAAGCAGCAAGAGGAAGCGCATCAAATTACGCAAAAAGGTTTTAAAAAAAAGTGCTATTTTTCTTAAAAAAACTGATGAAACAGATTTCTTTTTTATTCTTGGGAAGTTAACTTTGGAGAGATATAAAAAGAAAAGGGAAGGAGAAACTACAATGATTGTTCTGCTCTTGAAAAATATGTCTCTGAGCAATACAACTTTTCTAGCCTTTACCGAACTTAGGATTGCACATGAAAATTCTTTTATGGTAGATTTTAGATTGTCCCAAGTTTAAGATTTCCTGGGGATTCTGGAGATCAGGCTAGTTATGAACTAAAGATACCAATTATGTGTAAGGTTAAAGAATTCATTTCAATCTTTAGTTTCATAGGTCACGTCGGGTGTTTAGGAGACTTGCACTTATCTCTCTTTCACAGATCTGCAAGCAATGATGTCTGAACTTAATTCTACGTTCATTGGTATGACAAAATTAGAAGGCATACTTATGCAATTAAGTTTGGGCACCTCTTGAAATGTGGAAACGTCAGATCGTTCCTTTGAGAAAAATTCAAATGGCCTTATGATTTTGACAATAATATCGCCACAAATGACCATAGTTAGGGAGGGTTAGGGAGGTGATTTATGTTATGAGAGACTGCCTAGTAGATTTTCTGTTACTTTTAATTGTGAACCCCTAAACGTTTCTTTTTCTTTTCATCCGGGATTTTTTTCTCTCTTTCGCTTTTATGCATATATCAAATCATTTTTCAACTGAAATGGTCCTATATAGTCATGTATATATTGTATTTTTATCACATAAGTTGTGTAAAATATTATTGACAGAGGAAACAAGAAAGAAAACTGCCTTTTATATTTTTTTTCTGTAGCATATGGGAACTATTATCTGAATGTCTCAAATTATCTCGCAGAGAAAGGAAGAAAAAGAGCTGGTGCTATATGGTGGTGTTCTACCAGCTGATTGGCCGGTTGACAAGCAGAATGATGATCATGAGGATGAGGACGAGGAAGAGAAGTCATTTGCCCCAATTTCTGGTGTTTTACAAAAAAATTCATATTAAACACAAGTCTCTTCAACTAAGCATGATGAAATAAAAGTAATTACAAGTTCGGCTGTCATTATACTATGGGAAGAAAGAAATGTCCATCTTAGAGAATCAGATCAGACATTATTTTTGTTCATAGGGAAGCTAAAAGTGACATTAACAACATTGTCTTCAAGCCTTCAAAATTTTCTTTGTAAAAACTTTGGAACCTGGAGAGTATTTTGCTATTAAACATGAGATTGTTATCTATGTTACAGAGCTACACATCATGTAGTTTTGATCCGAAGGTGTTTGTGGTTTTCTTTGTAGAGATGACGACGTATGACAGTGGTAACATTAAAGTCACGGTGACAACTAGTGAGGTATCTCGTGATGAAAAAATATATCCCATTGACAAGCCACAGACAACAACAAGCCAATTGGTTTCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTAAATAAAGTTGCAAAACAGAAGTCAAGGCTGAAGCCCCGAAGTAAACGAGAGAAAAAGAAGGGAAGAAGAAAGAAA

mRNA sequence

ATGGTGGAGAACGAAGGGGACGAAGGAGGTGAGCTTGCACAGCTTTGTGGTTCCCACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCAGTGTCTTTCAATGAGAAAGACTTGCGTGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCAGAGAAGCAGCAAGAGGAAGCGCATCAAATTACGCAAAAAGGTTTTAAAAAAAAAAAGGAAGAAAAAGAGCTGGTGCTATATGGTGGTGTTCTACCAGCTGATTGGCCGGTTGACAAGCAGAATGATGATCATGAGGATGAGGACGAGGAAGAGAAGTCATTTGCCCCAATTTCTGAGATGACGACGTATGACAGTGGTAACATTAAAGTCACGGTGACAACTAGTGAGGTATCTCGTGATGAAAAAATATATCCCATTGACAAGCCACAGACAACAACAAGCCAATTGGTTTCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTAAATAAAGTTGCAAAACAGAAGTCAAGGCTGAAGCCCCGAAGTAAACGAGAGAAAAAGAAGGGAAGAAGAAAGAAA

Coding sequence (CDS)

ATGGTGGAGAACGAAGGGGACGAAGGAGGTGAGCTTGCACAGCTTTGTGGTTCCCACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCAGTGTCTTTCAATGAGAAAGACTTGCGTGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCAGAGAAGCAGCAAGAGGAAGCGCATCAAATTACGCAAAAAGGTTTTAAAAAAAAAAAGGAAGAAAAAGAGCTGGTGCTATATGGTGGTGTTCTACCAGCTGATTGGCCGGTTGACAAGCAGAATGATGATCATGAGGATGAGGACGAGGAAGAGAAGTCATTTGCCCCAATTTCTGAGATGACGACGTATGACAGTGGTAACATTAAAGTCACGGTGACAACTAGTGAGGTATCTCGTGATGAAAAAATATATCCCATTGACAAGCCACAGACAACAACAAGCCAATTGGTTTCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTAAATAAAGTTGCAAAACAGAAGTCAAGGCTGAAGCCCCGAAGTAAACGAGAGAAAAAGAAGGGAAGAAGAAAGAAA

Protein sequence

MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

Homology

[Close]

BLAST of MC09g0005 vs. NCBI nr
Match: XP_022157484.1 (ribosomal RNA-processing protein 17-like [Momordica charantia])

HSP 1 Score: 363 bits (931), Expect = 5.44e-126
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY 120
           QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY
Sbjct: 61  QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY 120

Query: 121 DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL 180
           DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL
Sbjct: 121 DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL 180

Query: 181 KPRSKREKKKGRRKK 195
           KPRSKREKKKGRRKK
Sbjct: 181 KPRSKREKKKGRRKK 195

[Close]

BLAST of MC09g0005 vs. NCBI nr
Match: XP_022142095.1 (ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 ribosomal RNA-processing protein 17-like [Momordica charantia])

HSP 1 Score: 275 bits (703), Expect = 2.87e-91
Identity = 158/196 (80.61%), Postives = 173/196 (88.27%), Query Frame = 0


Query: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MV+N+GDEGGELAQ  G HIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAHQITQKGFKKK-KEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTT 120
           QEEA +  +   +KK KEEKELVLYGG+LPAD PVD+QNDDHE+E  EEK FAPISE TT
Sbjct: 61  QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEE--EEKPFAPISETTT 120

Query: 121 YDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSR 180
           YDSGNIKVTV TSEVSRD +I PIDK QT T+QLV+KDKKHNLPITKKKP  KVAKQKSR
Sbjct: 121 YDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSR 180

Query: 181 LKPRSKREKKKGRRKK 195
            KPRSKR+KKKGR+KK
Sbjct: 181 PKPRSKRDKKKGRKKK 194

[Close]

BLAST of MC09g0005 vs. NCBI nr
Match: XP_038881021.1 (nucleolar protein 12 [Benincasa hispida])

HSP 1 Score: 257 bits (656), Expect = 6.11e-84
Identity = 149/200 (74.50%), Postives = 170/200 (85.00%), Query Frame = 0


Query: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MV N+G+EG ELAQ    HIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQ
Sbjct: 9   MVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKRKKKRRKEAKKQ 68

Query: 61  QEEAHQITQKGF---KKKKEEKELVLYGGVLPADWPVDKQNDDHED--EDEEEKSFAPIS 120
           QEEA  I +K     KK++ EK+LVLYGGVLPAD PVD++NDDHE+  EDEEEK  AP S
Sbjct: 69  QEEA--IRRKRIEARKKRRLEKDLVLYGGVLPADRPVDEENDDHEEGEEDEEEKPLAPFS 128

Query: 121 EMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAK 180
           E TTYDSGNIKVTV TSEVSR+E+I PIDKPQT T+QL +KDKKHNLP+TKKKP  KVAK
Sbjct: 129 ETTTYDSGNIKVTVITSEVSREEEIDPIDKPQTATTQLFAKDKKHNLPVTKKKPFKKVAK 188

Query: 181 QKSRLKPRSKREKKKGRRKK 195
           Q+SR K RSKR+K+KG++KK
Sbjct: 189 QRSRPKARSKRDKRKGKKKK 206

[Close]

BLAST of MC09g0005 vs. NCBI nr
Match: XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253 bits (646), Expect = 1.55e-82
Identity = 148/198 (74.75%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MV+NE +EGG L Q    HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQNDDHED--EDEEEKSFAPISEM 120
           QEEA +  + +  KK+K EKELVL+GGVLPAD PVD+QNDD +D  EDEEEK  APISE 
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQK 180
           TTYDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LP+TKKKP  KVA++K
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SRLKPRSKREKKKGRRKK 195
           SR K RSK +KKKGR+KK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of MC09g0005 vs. NCBI nr
Match: KAG6594625.1 (hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252 bits (644), Expect = 3.13e-82
Identity = 147/198 (74.24%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MV+NE +EGG L Q    HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQNDDHED--EDEEEKSFAPISEM 120
           QEEA +  + +  KK+K EKELVL+GGVLPAD PVD+QNDD +D  EDEEE+  APISE 
Sbjct: 61  QEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEEERPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQK 180
           TTYDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LP+TKKKP  KVA++K
Sbjct: 121 TTYDSGNIKVTVTTSEVRRDEEINPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKK 180

Query: 181 SRLKPRSKREKKKGRRKK 195
           SR K RSK +KKKGR+KK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of MC09g0005 vs. ExPASy TrEMBL
Match: A0A6J1DWL6 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111024179 PE=3 SV=1)

HSP 1 Score: 363 bits (931), Expect = 2.64e-126
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY 120
           QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY
Sbjct: 61  QEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTY 120

Query: 121 DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL 180
           DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL
Sbjct: 121 DSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRL 180

Query: 181 KPRSKREKKKGRRKK 195
           KPRSKREKKKGRRKK
Sbjct: 181 KPRSKREKKKGRRKK 195

[Close]

BLAST of MC09g0005 vs. ExPASy TrEMBL
Match: A0A6J1CL67 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111012309 PE=3 SV=1)

HSP 1 Score: 275 bits (703), Expect = 1.39e-91
Identity = 158/196 (80.61%), Postives = 173/196 (88.27%), Query Frame = 0


Query: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MV+N+GDEGGELAQ  G HIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAHQITQKGFKKK-KEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTT 120
           QEEA +  +   +KK KEEKELVLYGG+LPAD PVD+QNDDHE+E  EEK FAPISE TT
Sbjct: 61  QEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEE--EEKPFAPISETTT 120

Query: 121 YDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSR 180
           YDSGNIKVTV TSEVSRD +I PIDK QT T+QLV+KDKKHNLPITKKKP  KVAKQKSR
Sbjct: 121 YDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSR 180

Query: 181 LKPRSKREKKKGRRKK 195
            KPRSKR+KKKGR+KK
Sbjct: 181 PKPRSKRDKKKGRKKK 194

[Close]

BLAST of MC09g0005 vs. ExPASy TrEMBL
Match: A0A6J1EG67 (ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC111433808 PE=3 SV=1)

HSP 1 Score: 250 bits (638), Expect = 1.24e-81
Identity = 147/198 (74.24%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MV+NE +EGG L Q    HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQNDDHED--EDEEEKSFAPISEM 120
           QEEA +  + +  KK+K EK+LVL+GGVLPAD PVD+QNDD +D  EDEEEK  APISE 
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQK 180
           T YDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LPITKKKP  KVA++K
Sbjct: 121 TMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SRLKPRSKREKKKGRRKK 195
           SR K RSK +KKKGR+KK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of MC09g0005 vs. ExPASy TrEMBL
Match: A0A6J1KRQ7 (ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 PE=3 SV=1)

HSP 1 Score: 249 bits (636), Expect = 2.49e-81
Identity = 146/198 (73.74%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MV+NE  EGG L Q    H+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQNDDHED--EDEEEKSFAPISEM 120
           QEEA +  + +  KK+K EK+LVL+GGVLPAD PVD+QNDD +D  EDEEEK  APISE 
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEEEKPLAPISET 120

Query: 121 TTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQK 180
           TTYDSGNIKVTVTTSEV R+E+I PIDKPQ +TSQL++KDKKH+LPITKKKP  KVA++K
Sbjct: 121 TTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKK 180

Query: 181 SRLKPRSKREKKKGRRKK 195
           SR K RSK +KKKGR+KK
Sbjct: 181 SRSKSRSKTDKKKGRKKK 198

[Close]

BLAST of MC09g0005 vs. ExPASy TrEMBL
Match: A0A1S3C1A3 (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3 SV=1)

HSP 1 Score: 244 bits (624), Expect = 1.46e-79
Identity = 144/196 (73.47%), Postives = 164/196 (83.67%), Query Frame = 0


Query: 1   MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60
           MV+N+G+EGGELAQ    HIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 61  QEEA-HQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTT 120
           +EEA  ++  +  KK+K EK+LVLYGGVLPAD  VD QNDD EDE+EE    AP SE  T
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVLYGGVLPADRAVDDQNDDQEDEEEE--PLAPFSEART 120

Query: 121 YDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSR 180
           YD+GN+KVTVTTSEVSR+ +I PIDKPQT  +QL+ KDKKHNLPITKKK   KVAKQ+SR
Sbjct: 121 YDNGNVKVTVTTSEVSREGEIDPIDKPQTAIAQLLGKDKKHNLPITKKKLFKKVAKQRSR 180

Query: 181 LKPRSKREKKKGRRKK 195
            K RSKR+KKKGR+KK
Sbjct: 181 PKLRSKRDKKKGRKKK 194

[Close]

BLAST of MC09g0005 vs. TAIR 10
Match: AT1G11240.1 (CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-25
Identity = 88/191 (46.07%), Postives = 125/191 (65.45%), Query Frame = 0


Query: 7   DEGGELA-QLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAH 66
           +E G LA      HI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA 
Sbjct: 8   EEAGSLATPTSARHIGKRARKNKSLTVSFDEKDLKDFVTGFHKRKKKRRKEAQKQQEEAF 67

Query: 67  QITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKSFAPISEMTTYDSGNI 126
           +  +   +K ++ +EL++ G     D    +  D+ + EDEE +  A  S  T YD+G +
Sbjct: 68  RRKRIEARKNRKLEELMVAGN--GEDNEDGEAEDEVDAEDEEAEPDASTSATTMYDTGEL 127

Query: 127 KVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDK---KHNLPITKKKPLNKVAKQKSRLKP 186
           KVTVTTSE+SR+E+  PI K +T +++  S  K   K  +P+ K KP+ K ++++S  K 
Sbjct: 128 KVTVTTSEISREEE-EPIRKEKTQSTESGSTAKASTKQPVPVRKTKPM-KQSRRRSTTKT 187

Query: 187 RSKREKKKGRR 194
             KR+KKK  R
Sbjct: 188 MKKRDKKKQAR 194

The following BLAST results are available for this feature:

BLAST of MC09g0005 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g0005 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157484.1	5.44e-126	100.00	ribosomal RNA-processing protein 17-like [Momordica charantia]	[more]
XP_022142095.1	2.87e-91	80.61	ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 r...	[more]
XP_038881021.1	6.11e-84	74.50	nucleolar protein 12 [Benincasa hispida]	[more]
XP_023517913.1	1.55e-82	74.75	ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]	[more]
KAG6594625.1	3.13e-82	74.24	hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC09g0005 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWL6	2.64e-126	100.00	ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1CL67	1.39e-91	80.61	ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1EG67	1.24e-81	74.24	ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC11143380...	[more]
A0A6J1KRQ7	2.49e-81	73.74	ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 ...	[more]
A0A1S3C1A3	1.46e-79	73.47	ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3...	[more]

BLAST of MC09g0005 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11240.1	3.0e-25	46.07	CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..195
IPR019186	Nucleolar protein 12	PFAM	PF09805	Nop25	coord: 22..124 e-value: 9.7E-11 score: 42.3
IPR019186	Nucleolar protein 12	PANTHER	PTHR14577	NUCLEOLAR PROTEIN 12	coord: 17..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0005.1	MC09g0005.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding