MELO3C009776.jh1.t2 (mRNA) Melon (Harukei-3) v1.41
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDSstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.AGAGAGGGAGCGAAAATGGAGGAAGATGGGTTTGAAGCAGAGCCGAATCCTGTGGAGTTCGGCACTTGCTTGAGTTCCTACATCGATGATGGAACCACTGAGAGCCACAGATACTTCCTTTCTCGAAGAACAGTTGTGGAGATGCTTAAGGACCGAGGTTACACTATCAACTCCCCCGATATCGACCTCTCTCTTCAACAATTCCGAGATATTTTTGGCCAATACCCCGACGTTGATCGCCTAAAACTATACGCCGCTCATCACTCCGATCCCTCCAAAAGAGTATGCCTCCTCCGCTTCTTGCATTGTTTATTCCTTCCCGCTTCTTGTTTGTCTTAGTTATTCAAATTAGGGTGGAATAATGTGAGTATAGAAAGAGCGTTGATTCATTCTGTAGATTTCTTTTAGATTTATTGTCGAAATGCAACGGACCGAATTGCTTACCTTTCTCTACTAGTTTATGATTCACGGAGGATTACTGAGGGAAATGCTTTACTAAGCCTGGACGAAACGTGGAAATTATTGAGAAATGTCTGAAAGGTTGATAATATAAATATAGTACTTTTTTATAATATTTGTTATTTCGTAACCGAATGTTGATTTTGCAGGTTCTTGTAGTATTCTGTGGAACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGCCAAATTGCTAATAAGGACAGTTTGCATGGTCTTATTTTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTTAAGGTTGAAATATTCCAGGTTCGTTCCTTGAAGTTGTGTATGAATTTCTTTAGTTGACAGAAACATGAGCAGCGTCTTGGTAAATGCTTGGTCTCAACGAGTCATTTATTTGTTGCCATGCTGTGTTTTTAGTGTTTTCTTCCTACTTAAGTTTTTCGTGTATTCAACACAATGGACATTTCTGAAGTTGTTTTCTGAGTATACTAACAACTGAAGTTGGCATTGACATGGGGAGACCTGGTGAGGGAACAACTAACAATAGTTTGCCATGATAAAAAAGAGAAATAACTTAAAGAAGTAGAGATTTCGGGAAGTGAGACAATAGAGTGAACCCGACAATAACAAAATGTAGTAATACAGGAAGGGTTCTAAACCTTTTGTTTTTTTCTTAATTTTCCGAAAGAGGGTGATGGGAAGCTTGTCATGTTTATTAATCTTGTCCATGAAATTTTAGTGAGGAAATAATAATTTTTCTAGAGAAAGAAGCCTTCAATCGCTACTGCACGGGGACTGTGAATGTAAAAATATAGTCACTTTTGTTGAGGATCTCACGTCGGAAAGATAGGGAGACCTCACAATCTTTAAAAGATGTATGGTTTTGAGATGAAACCCCATTTTTCTGTAATAACTTCCTACATTCTAGCAATCCTCAAACAATTTCAATCTTGAACATAGAGAATAAGGTTCTTTTATTGGGCATAATTTTTTTGTTTGCTCTTGTATGTTCTATCATAATGAAGCGTGGTCTTTTTTTAGAAAGATAATCTTAAAAAGTTCATATCTTGAATTATATGTTGCTCATTTTTTTTAATAATTTTATTTTATGGTTTATCTTATTTTGAGACATTTTTCTATATTTCCTCAAATGACTGCACTGTTATTTTTTTCTGGTATCAGATTACTGACTTGCTCGTCAACATCACAAAGCATGCTTTAAAGCCGAACCATCAAGTACTAACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGGTAAAATATGGAAAAGTACCATAAACAATATCTTGGCAGTTCAGTTTTCAATTTCACTATCTTCCGTTGGTGATTACTTAATTCTGAATTATATTTCCTTCCGCGTGATTGCCTGTAGACTAAACTCTTTCTCATCTTAAACATGCTCCCCTGAACGAACATCAATTTCTTCTTTTCAATATTTATGCTAACCGCTGGTAAGAGTCATATGTCAAAGGACATCTTTCAATATTTTCGGGGATGCTACAGCTGGGATTTTGAGTGAGCATACAGTATCTCTATCTCATTTTGGACTACCATTTTTTGGGGGGGTAAAACTCATCTCAAGTGTTACATCATATAGGCTTATTATGTCCTCCAATTATTAAGTTTCATTAGGGGGCGTTTGGACATCTGGCTTGGCACCTTAAGCTTGGGTGCAATATCCGGAAGTTTGGGTCTAGGAAAATTGTGCATTAGAGGGTTTAGGGAGTTTTGTTCTAGGAAAAGTGCATATGCGGTGCTGCCTTGCAGGTTTAGGAAAACTATTTGTGGTACATGAATAATGTACTACTTCTCAAGCCGATTGGTGCCTCTAATTAAACCTGAGCTTTGGAACTTCTCTTACAAATGTGGTTTGGGCTTAGAAAGTGAATCCCACCCAACCTAGGGGTTTGTATATTAAATCTATGAGGGTTTGAGAAGATTGAGTTTATAATAACTGCGTCTGCAGTTTGAGTAGAAAGCTTTGGTTTGAGAAAACTGTGGGAGGTTGAATAGTGAGTTACTGTTCTAGCCTATTGGTTTTTCCAATTAAACCTGGGTTTGGCAGCTTCTCTCTATATGTGGTGTGGCTTCTAGCCAAACATATGCACGAAACACCCCCTTAGTGCTATGGAAAGAATAATTGAGAAGATACGGTTGTTGGGGGCTCAAGTAACTCAGCCCATCCCATCAAAAAAGAAAAGTCGACCCATTACATGATACCTCGCTTCAGACAAAAATCAATAATTAATATTTTGTGCGCTTGGTAGAGGGAATATATTGATTTTTTACGTTTTACTTTTTATAAAAAAATCTAGCTTTCATGCAGAAAAAAAATGAAGGAATAATTGAACTTTAAAGAGCTCTTTCCCGTAGCATTTACGACTTGAGTAACAGGAGTTACTACGTTAAAGCACAAAAACAGTTGCATATCTCTATTTCGTTTTGACATCACTTTAGCCTTTTGGATCAATTCGTCCATACAAGATCAATGGAAGGGGCTAAATATTTCTTAGAGTTGTTGAAGGTTCCAATCGCCTGTTTGGAAAATAGGAATTGTGAAACAAAGCAATACAACCATTTCTGCTATGTGCAATTGCTTCTTGAATTCTCATGGACTCTGTTTCTTAAACTAATTACAACAGTTGTTCAACCTCTAGTCTTCATGCCTACTTTCAATACAATGCAGCTTCCTCGTATGTTACGTACGGATGCTATCGCTCGATATTATGGACTGGAGAAAGGGCAAGTTGTGAAAGTGACTTACGATGGTGATATGACTAGTGCACACGTAACTTACCGTTGTGTTTGGTGATGGACCTATAGACACAGGTTTCACCAATCAATTTTTCGATTTCTTCCCCCATAAAACTCAGATTAGTTTTTGTCTTAAACTTCTATGTTCCAGAACTTCTTGTATTTAATAGGGGTTTCGAGTGCAGATTTTTATGATTATGGGTTTCTTCAAGCAATCTGTATCCACAATTACTGCAGCCATGCTTAACAAGGTACTTGTAACTCCCTCCAGTTCTGTATGAGTATGAAAGAAAAGGAATGAAGCTAGTTGTAGAAGATGTATTTATATCTTTTTCATTCCTTCATGTGTGAGAAACAAAACAATATTCTAATCCTCACTCTTAACTTGTGAAGTATTTGTTTTGGATGGCAAGAGACTATGATGCCTGGAAAAGTGGAGAATCAACCAAATTTTAAAAATAAAAATAGAAGTATTTTT AGAGAGGGAGCGAAAATGGAGGAAGATGGGTTTGAAGCAGAGCCGAATCCTGTGGAGTTCGGCACTTGCTTGAGTTCCTACATCGATGATGGAACCACTGAGAGCCACAGATACTTCCTTTCTCGAAGAACAGTTGTGGAGATGCTTAAGGACCGAGGTTACACTATCAACTCCCCCGATATCGACCTCTCTCTTCAACAATTCCGAGATATTTTTGGCCAATACCCCGACGTTGATCGCCTAAAACTATACGCCGCTCATCACTCCGATCCCTCCAAAAGAGTTCTTGTAGTATTCTGTGGAACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGCCAAATTGCTAATAAGGACAGTTTGCATGGTCTTATTTTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTTAAGGTTGAAATATTCCAGATTACTGACTTGCTCGTCAACATCACAAAGCATGCTTTAAAGCCGAACCATCAAGTACTAACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGCTTCCTCGTATGTTACGTACGGATGCTATCGCTCGATATTATGGACTGGAGAAAGGGCAAGTTGTGAAAGTGACTTACGATGGTGATATGACTAGTGCACACGTAACTTACCGTTGTGTTTGGTGATGGACCTATAGACACAGGTTTCACCAATCAATTTTTCGATTTCTTCCCCCATAAAACTCAGATTAGTTTTTGTCTTAAACTTCTATGTTCCAGAACTTCTTGTATTTAATAGGGGTTTCGAGTGCAGATTTTTATGATTATGGGTTTCTTCAAGCAATCTGTATCCACAATTACTGCAGCCATGCTTAACAAGGTACTTGTAACTCCCTCCAGTTCTGTATGAGTATGAAAGAAAAGGAATGAAGCTAGTTGTAGAAGATGTATTTATATCTTTTTCATTCCTTCATGTGTGAGAAACAAAACAATATTCTAATCCTCACTCTTAACTTGTGAAGTATTTGTTTTGGATGGCAAGAGACTATGATGCCTGGAAAAGTGGAGAATCAACCAAATTTTAAAAATAAAAATAGAAGTATTTTT ATGGAGGAAGATGGGTTTGAAGCAGAGCCGAATCCTGTGGAGTTCGGCACTTGCTTGAGTTCCTACATCGATGATGGAACCACTGAGAGCCACAGATACTTCCTTTCTCGAAGAACAGTTGTGGAGATGCTTAAGGACCGAGGTTACACTATCAACTCCCCCGATATCGACCTCTCTCTTCAACAATTCCGAGATATTTTTGGCCAATACCCCGACGTTGATCGCCTAAAACTATACGCCGCTCATCACTCCGATCCCTCCAAAAGAGTTCTTGTAGTATTCTGTGGAACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGCCAAATTGCTAATAAGGACAGTTTGCATGGTCTTATTTTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTTAAGGTTGAAATATTCCAGATTACTGACTTGCTCGTCAACATCACAAAGCATGCTTTAAAGCCGAACCATCAAGTACTAACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGCTTCCTCGTATGTTACGTACGGATGCTATCGCTCGATATTATGGACTGGAGAAAGGGCAAGTTGTGAAAGTGACTTACGATGGTGATATGACTAGTGCACACGTAACTTACCGTTGTGTTTGGTGA MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW Homology
BLAST of MELO3C009776.jh1.t2 vs. NCBI nr
Match: XP_008443287.1 (PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo]) HSP 1 Score: 450 bits (1157), Expect = 2.20e-159 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. NCBI nr
Match: XP_004136650.1 (DNA-directed RNA polymerase V subunit 5A [Cucumis sativus] >KGN59468.1 hypothetical protein Csa_000810 [Cucumis sativus]) HSP 1 Score: 436 bits (1120), Expect = 9.62e-154 Identity = 219/227 (96.48%), Postives = 223/227 (98.24%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. NCBI nr
Match: KAA0053863.1 (DNA-directed RNA polymerase V subunit 5A [Cucumis melo var. makuwa] >TYK25540.1 DNA-directed RNA polymerase V subunit 5A [Cucumis melo var. makuwa]) HSP 1 Score: 432 bits (1111), Expect = 6.45e-152 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. NCBI nr
Match: XP_038903402.1 (DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] >XP_038903403.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida]) HSP 1 Score: 414 bits (1063), Expect = 4.70e-145 Identity = 207/227 (91.19%), Postives = 218/227 (96.04%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. NCBI nr
Match: XP_023539155.1 (DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo]) HSP 1 Score: 404 bits (1038), Expect = 3.04e-141 Identity = 200/227 (88.11%), Postives = 217/227 (95.59%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9M1J2 (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPE5A PE=1 SV=1) HSP 1 Score: 282.7 bits (722), Expect = 3.6e-75 Identity = 132/210 (62.86%), Postives = 172/210 (81.90%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9ZVB9 (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702 GN=NRPD5B PE=1 SV=1) HSP 1 Score: 265.0 bits (676), Expect = 7.8e-70 Identity = 123/204 (60.29%), Postives = 167/204 (81.86%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9M1H8 (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana OX=3702 GN=NRPE5C PE=2 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 3.6e-51 Identity = 100/226 (44.25%), Postives = 152/226 (67.26%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.3e-29 Identity = 70/209 (33.49%), Postives = 123/209 (58.85%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9N5K2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28 Identity = 69/209 (33.01%), Postives = 122/209 (58.37%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. ExPASy TrEMBL
Match: A0A1S3B7M5 (DNA-directed RNA polymerase V subunit 5A OS=Cucumis melo OX=3656 GN=LOC103486906 PE=3 SV=1) HSP 1 Score: 450 bits (1157), Expect = 1.06e-159 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. ExPASy TrEMBL
Match: A0A0A0LCG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822200 PE=3 SV=1) HSP 1 Score: 436 bits (1120), Expect = 4.66e-154 Identity = 219/227 (96.48%), Postives = 223/227 (98.24%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. ExPASy TrEMBL
Match: A0A5D3DQJ3 (DNA-directed RNA polymerase V subunit 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006920 PE=3 SV=1) HSP 1 Score: 432 bits (1111), Expect = 3.12e-152 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1I733 (DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470215 PE=3 SV=1) HSP 1 Score: 402 bits (1032), Expect = 1.21e-140 Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1GH86 (DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453892 PE=3 SV=1) HSP 1 Score: 401 bits (1030), Expect = 2.44e-140 Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein ) HSP 1 Score: 282.7 bits (722), Expect = 2.6e-76 Identity = 132/210 (62.86%), Postives = 172/210 (81.90%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D ) HSP 1 Score: 265.0 bits (676), Expect = 5.5e-71 Identity = 123/204 (60.29%), Postives = 167/204 (81.86%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E ) HSP 1 Score: 203.0 bits (515), Expect = 2.6e-52 Identity = 100/226 (44.25%), Postives = 152/226 (67.26%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein ) HSP 1 Score: 126.3 bits (316), Expect = 3.1e-29 Identity = 73/200 (36.50%), Postives = 117/200 (58.50%), Query Frame = 0
BLAST of MELO3C009776.jh1.t2 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C ) HSP 1 Score: 115.9 bits (289), Expect = 4.2e-26 Identity = 72/207 (34.78%), Postives = 118/207 (57.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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