MELO3C009776.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C009776.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	DNA-directed RNA polymerase V subunit 5A
Location	chr04: 29231604 .. 29235497 (-)
RNA-Seq Expression	MELO3C009776.jh1
Synteny	MELO3C009776.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCTAAAGCAAGAAAAAAAGAAGGAGACGCTGTACGCTCTATTATAGGAGAGAGGGAGCGAAAATGGAGGAAGATGGGTTTGAAGCAGAGCCGAATCCTGTGGAGTTCGGCACTTGCTTGAGTTCCTACATCGATGATGGAACCACTGAGAGCCACAGATACTTCCTTTCTCGAAGAACAGTTGTGGAGATGCTTAAGGACCGAGGTTACACTATCAACTCCCCCGATATCGACCTCTCTCTTCAACAATTCCGAGATATTTTTGGCCAATACCCCGACGTTGATCGCCTAAAACTATACGCCGCTCATCACTCCGATCCCTCCAAAAGAGTATGCCTCCTCCGCTTCTTGCATTGTTTATTCCTTCCCGCTTCTTGTTTGTCTTAGTTATTCAAATTAGGGTGGAATAATGTGAGTATAGAAAGAGCGTTGATTCATTCTGTAGATTTCTTTTAGATTTATTGTCGAAATGCAACGGACCGAATTGCTTACCTTTCTCTACTAGTTTATGATTCACGGAGGATTACTGAGGGAAATGCTTTACTAAGCCTGGACGAAACGTGGAAATTATTGAGAAATGTCTGAAAGGTTGATAATATAAATATAGTACTTTTTTATAATATTTGTTATTTCGTAACCGAATGTTGATTTTGCAGGTTCTTGTAGTATTCTGTGGAACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGCCAAATTGCTAATAAGGACAGTTTGCATGGTCTTATTTTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTTAAGGTTGAAATATTCCAGGTTCGTTCCTTGAAGTTGTGTATGAATTTCTTTAGTTGACAGAAACATGAGCAGCGTCTTGGTAAATGCTTGGTCTCAACGAGTCATTTATTTGTTGCCATGCTGTGTTTTTAGTGTTTTCTTCCTACTTAAGTTTTTCGTGTATTCAACACAATGGACATTTCTGAAGTTGTTTTCTGAGTATACTAACAACTGAAGTTGGCATTGACATGGGGAGACCTGGTGAGGGAACAACTAACAATAGTTTGCCATGATAAAAAAGAGAAATAACTTAAAGAAGTAGAGATTTCGGGAAGTGAGACAATAGAGTGAACCCGACAATAACAAAATGTAGTAATACAGGAAGGGTTCTAAACCTTTTGTTTTTTTCTTAATTTTCCGAAAGAGGGTGATGGGAAGCTTGTCATGTTTATTAATCTTGTCCATGAAATTTTAGTGAGGAAATAATAATTTTTCTAGAGAAAGAAGCCTTCAATCGCTACTGCACGGGGACTGTGAATGTAAAAATATAGTCACTTTTGTTGAGGATCTCACGTCGGAAAGATAGGGAGACCTCACAATCTTTAAAAGATGTATGGTTTTGAGATGAAACCCCATTTTTCTGTAATAACTTCCTACATTCTAGCAATCCTCAAACAATTTCAATCTTGAACATAGAGAATAAGGTTCTTTTATTGGGCATAATTTTTTTGTTTGCTCTTGTATGTTCTATCATAATGAAGCGTGGTCTTTTTTTAGAAAGATAATCTTAAAAAGTTCATATCTTGAATTATATGTTGCTCATTTTTTTTAATAATTTTATTTTATGGTTTATCTTATTTTGAGACATTTTTCTATATTTCCTCAAATGACTGCACTGTTATTTTTTTCTGGTATCAGATTACTGACTTGCTCGTCAACATCACAAAGCATGCTTTAAAGCCGAACCATCAAGTACTAACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGGTAAAATATGGAAAAGTACCATAAACAATATCTTGGCAGTTCAGTTTTCAATTTCACTATCTTCCGTTGGTGATTACTTAATTCTGAATTATATTTCCTTCCGCGTGATTGCCTGTAGACTAAACTCTTTCTCATCTTAAACATGCTCCCCTGAACGAACATCAATTTCTTCTTTTCAATATTTATGCTAACCGCTGGTAAGAGTCATATGTCAAAGGACATCTTTCAATATTTTCGGGGATGCTACAGCTGGGATTTTGAGTGAGCATACAGTATCTCTATCTCATTTTGGACTACCATTTTTTGGGGGGGTAAAACTCATCTCAAGTGTTACATCATATAGGCTTATTATGTCCTCCAATTATTAAGTTTCATTAGGGGGCGTTTGGACATCTGGCTTGGCACCTTAAGCTTGGGTGCAATATCCGGAAGTTTGGGTCTAGGAAAATTGTGCATTAGAGGGTTTAGGGAGTTTTGTTCTAGGAAAAGTGCATATGCGGTGCTGCCTTGCAGGTTTAGGAAAACTATTTGTGGTACATGAATAATGTACTACTTCTCAAGCCGATTGGTGCCTCTAATTAAACCTGAGCTTTGGAACTTCTCTTACAAATGTGGTTTGGGCTTAGAAAGTGAATCCCACCCAACCTAGGGGTTTGTATATTAAATCTATGAGGGTTTGAGAAGATTGAGTTTATAATAACTGCGTCTGCAGTTTGAGTAGAAAGCTTTGGTTTGAGAAAACTGTGGGAGGTTGAATAGTGAGTTACTGTTCTAGCCTATTGGTTTTTCCAATTAAACCTGGGTTTGGCAGCTTCTCTCTATATGTGGTGTGGCTTCTAGCCAAACATATGCACGAAACACCCCCTTAGTGCTATGGAAAGAATAATTGAGAAGATACGGTTGTTGGGGGCTCAAGTAACTCAGCCCATCCCATCAAAAAAGAAAAGTCGACCCATTACATGATACCTCGCTTCAGACAAAAATCAATAATTAATATTTTGTGCGCTTGGTAGAGGGAATATATTGATTTTTTACGTTTTACTTTTTATAAAAAAATCTAGCTTTCATGCAGAAAAAAAATGAAGGAATAATTGAACTTTAAAGAGCTCTTTCCCGTAGCATTTACGACTTGAGTAACAGGAGTTACTACGTTAAAGCACAAAAACAGTTGCATATCTCTATTTCGTTTTGACATCACTTTAGCCTTTTGGATCAATTCGTCCATACAAGATCAATGGAAGGGGCTAAATATTTCTTAGAGTTGTTGAAGGTTCCAATCGCCTGTTTGGAAAATAGGAATTGTGAAACAAAGCAATACAACCATTTCTGCTATGTGCAATTGCTTCTTGAATTCTCATGGACTCTGTTTCTTAAACTAATTACAACAGTTGTTCAACCTCTAGTCTTCATGCCTACTTTCAATACAATGCAGCTTCCTCGTATGTTACGTACGGATGCTATCGCTCGATATTATGGACTGGAGAAAGGGCAAGTTGTGAAAGTGACTTACGATGGTGATATGACTAGTGCACACGTAACTTACCGTTGTGTTTGGTGATGGACCTATAGACACAGGTTTCACCAATCAATTTTTCGATTTCTTCCCCCATAAAACTCAGATTAGTTTTTGTCTTAAACTTCTATGTTCCAGAACTTCTTGTATTTAATAGGGGTTTCGAGTGCAGATTTTTATGATTATGGGTTTCTTCAAGCAATCTGTATCCACAATTACTGCAGCCATGCTTAACAAGGTACTTGTAACTCCCTCCAGTTCTGTATGAGTATGAAAGAAAAGGAATGAAGCTAGTTGTAGAAGATGTATTTATATCTTTTTCATTCCTTCATGTGTGAGAAACAAAACAATATTCTAATCCTCACTCTTAACTTGTGAAGTATTTGTTTTGGATGGCAAGAGACTATGATGCCTGGAAAAGTGGAGAATCAACCAAATTTTAAAAATAAAAATAGAAGTATTTTTTACTAAAGATATGAAGTATTATAATAAATTTAGTTATATAGAACCTTTAATCAGAACAATATTTTATTTCATAATAGTTAGCAACTTT

mRNA sequence

ATTTCTAAAGCAAGAAAAAAAGAAGGAGACGCTGTACGCTCTATTATAGGAGAGAGGGAGCGAAAATGGAGGAAGATGGGTTTGAAGCAGAGCCGAATCCTGTGGAGTTCGGCACTTGCTTGAGTTCCTACATCGATGATGGAACCACTGAGAGCCACAGATACTTCCTTTCTCGAAGAACAGTTGTGGAGATGCTTAAGGACCGAGGTTACACTATCAACTCCCCCGATATCGACCTCTCTCTTCAACAATTCCGAGATATTTTTGGCCAATACCCCGACGTTGATCGCCTAAAACTATACGCCGCTCATCACTCCGATCCCTCCAAAAGAGTTCTTGTAGTATTCTGTGGAACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGCCAAATTGCTAATAAGGACAGTTTGCATGGTCTTATTTTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTTAAGGTTGAAATATTCCAGATTACTGACTTGCTCGTCAACATCACAAAGCATGCTTTAAAGCCGAACCATCAAGTACTAACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGCTTCCTCGTATGTTACGTACGGATGCTATCGCTCGATATTATGGACTGGAGAAAGGGCAAGTTGTGAAAGTGACTTACGATGGTGATATGACTAGTGCACACGTAACTTACCGTTGTGTTTGGTGATGGACCTATAGACACAGGGGTTTCGAGTGCAGATTTTTATGATTATGGGTTTCTTCAAGCAATCTGTATCCACAATTACTGCAGCCATGCTTAACAAGGTACTTGTAACTCCCTCCAGTTCTGTATGAGTATGAAAGAAAAGGAATGAAGCTAGTTGTAGAAGATGTATTTATATCTTTTTCATTCCTTCATGTGTGAGAAACAAAACAATATTCTAATCCTCACTCTTAACTTGTGAAGTATTTGTTTTGGATGGCAAGAGACTATGATGCCTGGAAAAGTGGAGAATCAACCAAATTTTAAAAATAAAAATAGAAGTATTTTTTACTAAAGATATGAAGTATTATAATAAATTTAGTTATATAGAACCTTTAATCAGAACAATATTTTATTTCATAATAGTTAGCAACTTT

Coding sequence (CDS)

ATGGAGGAAGATGGGTTTGAAGCAGAGCCGAATCCTGTGGAGTTCGGCACTTGCTTGAGTTCCTACATCGATGATGGAACCACTGAGAGCCACAGATACTTCCTTTCTCGAAGAACAGTTGTGGAGATGCTTAAGGACCGAGGTTACACTATCAACTCCCCCGATATCGACCTCTCTCTTCAACAATTCCGAGATATTTTTGGCCAATACCCCGACGTTGATCGCCTAAAACTATACGCCGCTCATCACTCCGATCCCTCCAAAAGAGTTCTTGTAGTATTCTGTGGAACTGGTGCAGTAAAAGTTAATGCTATTCGCAATATTGCTGGCCAAATTGCTAATAAGGACAGTTTGCATGGTCTTATTTTAATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTTAAGGTTGAAATATTCCAGATTACTGACTTGCTCGTCAACATCACAAAGCATGCTTTAAAGCCGAACCATCAAGTACTAACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGCTTCCTCGTATGTTACGTACGGATGCTATCGCTCGATATTATGGACTGGAGAAAGGGCAAGTTGTGAAAGTGACTTACGATGGTGATATGACTAGTGCACACGTAACTTACCGTTGTGTTTGGTGA

Protein sequence

MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW

Homology

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BLAST of MELO3C009776.jh1 vs. NCBI nr
Match: XP_008443287.1 (PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo])

HSP 1 Score: 450 bits (1157), Expect = 2.20e-159
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60
           MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60

Query: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227

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BLAST of MELO3C009776.jh1 vs. NCBI nr
Match: XP_004136650.1 (DNA-directed RNA polymerase V subunit 5A [Cucumis sativus] >KGN59468.1 hypothetical protein Csa_000810 [Cucumis sativus])

HSP 1 Score: 436 bits (1120), Expect = 9.62e-154
Identity = 219/227 (96.48%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60
           MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSP+ID SL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60

Query: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFR+ FGQ+PDVDRLKL AAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT AH+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227

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BLAST of MELO3C009776.jh1 vs. NCBI nr
Match: KAA0053863.1 (DNA-directed RNA polymerase V subunit 5A [Cucumis melo var. makuwa] >TYK25540.1 DNA-directed RNA polymerase V subunit 5A [Cucumis melo var. makuwa])

HSP 1 Score: 432 bits (1111), Expect = 6.45e-152
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60
           MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60

Query: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAH 220
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAH
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAH 220

[Close]

BLAST of MELO3C009776.jh1 vs. NCBI nr
Match: XP_038903402.1 (DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] >XP_038903403.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida])

HSP 1 Score: 414 bits (1063), Expect = 4.70e-145
Identity = 207/227 (91.19%), Postives = 218/227 (96.04%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60
           MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NS DIDLSL
Sbjct: 1   MEEDGFEGEPNEVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSSDIDLSL 60

Query: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFR+I+GQ PDVDRLKL A H SDPSKRVLV+FCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVL+EEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLSEEEKQKLLQQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227
           SIEEKQLPRMLR DA+ARYYGLEKGQVVKVTYDGDMT +HVTYRCVW
Sbjct: 181 SIEEKQLPRMLRMDAVARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of MELO3C009776.jh1 vs. NCBI nr
Match: XP_023539155.1 (DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404 bits (1038), Expect = 3.04e-141
Identity = 200/227 (88.11%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60
           MEEDGF  EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN  DIDL+L
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFR+I+GQ+PDVDRLKL AAH +DPSKR+LV+FCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFREIYGQFPDVDRLKLSAAHGADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227
           SIEEKQLPRMLRTDAIARYYGLEKGQ+VKVTYDGDMT +HVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQIVKVTYDGDMTRSHVTYRCVW 227

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BLAST of MELO3C009776.jh1 vs. ExPASy Swiss-Prot
Match: Q9M1J2 (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPE5A PE=1 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.6e-75
Identity = 132/210 (62.86%), Postives = 172/210 (81.90%), Query Frame = 0


Query: 18  CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLK 77
           CLS Y+D  + ESHRY+L+RR  ++ML+DRGY ++  DI+LSL  FR ++G+ PDVDRL+
Sbjct: 13  CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query: 78  LYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAV 137
           + A H SD +K+V +VF GT  VKVNAIR++   I +++++ GLIL++QN +TNQA+KA+
Sbjct: 73  ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132

Query: 138 ELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIA 197
           ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK  LLK++SIEEKQLPR+ + DAI 
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192

Query: 198 RYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 228
           RYYGLEKGQVVKV Y G++T +HV +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

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BLAST of MELO3C009776.jh1 vs. ExPASy Swiss-Prot
Match: Q9ZVB9 (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702 GN=NRPD5B PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 7.8e-70
Identity = 123/204 (60.29%), Postives = 167/204 (81.86%), Query Frame = 0


Query: 23  IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAH 82
           I   + E H+Y+L+RRT +EML+DRGY ++  DI+LSLQQFR ++G++PDVD L++ A H
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 83  HSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSF 142
             D SK++ VVFCGTG VKVNA+R IA  + +++++ GLIL++Q+ ITNQA+KAVELFSF
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133

Query: 143 KVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGL 202
           KVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPR+   D I RYYGL
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193

Query: 203 EKGQVVKVTYDGDMTSAHVTYRCV 227
           E GQV+KVTY  +++ +HVTYRCV
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of MELO3C009776.jh1 vs. ExPASy Swiss-Prot
Match: Q9M1H8 (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana OX=3702 GN=NRPE5C PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.6e-51
Identity = 100/226 (44.25%), Postives = 152/226 (67.26%), Query Frame = 0


Query: 2   EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 61
           EE   E   +  + GT C+S   D G  ES R++L+R T  EML+DRGY +N  ++ L+L
Sbjct: 7   EEGCCENVESTFDDGTNCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTL 66

Query: 62  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 121
            +FR +FG+ P+++RL++     SDP K++LVVF GT  + V ++R +  QI+N   LH 
Sbjct: 67  SEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHA 126

Query: 122 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 181
           +IL++Q+++ + A KA+  F F VE F I DLLVNITKH  +P  ++L +EEK++LL+++
Sbjct: 127 MILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKH 186

Query: 182 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCV 227
           ++E+KQLP +   D+  RYYGL+K QVVK+TY  +     VTYRC+
Sbjct: 187 ALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of MELO3C009776.jh1 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-29
Identity = 70/209 (33.49%), Postives = 123/209 (58.85%), Query Frame = 0


Query: 25  DGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDR-----LKLY 84
           D   E++R +  R+TV++M+ DRGY +   ++D  L+ F++ FG  P   +     L + 
Sbjct: 3   DDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTIL 62

Query: 85  AAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVEL 144
            AH+ DP+ ++ V F     + +  I+ I  Q+  + ++   I++VQ  +T  A +++  
Sbjct: 63  VAHNDDPADQMFVFFPEDTKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGD 122

Query: 145 FS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIA 204
            +  + +E F   +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +A
Sbjct: 123 MAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVA 182

Query: 205 RYYGLEKGQVVKVTYDGDMTSAHVTYRCV 227
           RY+GL +GQVVK+    +    ++TYR V
Sbjct: 183 RYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[Close]

BLAST of MELO3C009776.jh1 vs. ExPASy Swiss-Prot
Match: Q9N5K2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 69/209 (33.01%), Postives = 122/209 (58.37%), Query Frame = 0


Query: 25  DGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDR-----LKLY 84
           D   E++R +  R+TV++M+ DRGY +   ++D  L+ F+  +G  P   +     L + 
Sbjct: 3   DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62

Query: 85  AAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVEL 144
            AH+ DP+ ++ V F     + +  I+ I  Q+  + ++   I++VQ  +T  A +++  
Sbjct: 63  VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGD 122

Query: 145 FS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIA 204
            +  + +E F   +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +A
Sbjct: 123 MAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVA 182

Query: 205 RYYGLEKGQVVKVTYDGDMTSAHVTYRCV 227
           RY+GL +GQVVK+    +    ++TYR V
Sbjct: 183 RYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[Close]

BLAST of MELO3C009776.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B7M5 (DNA-directed RNA polymerase V subunit 5A OS=Cucumis melo OX=3656 GN=LOC103486906 PE=3 SV=1)

HSP 1 Score: 450 bits (1157), Expect = 1.06e-159
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60
           MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60

Query: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227

[Close]

BLAST of MELO3C009776.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LCG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822200 PE=3 SV=1)

HSP 1 Score: 436 bits (1120), Expect = 4.66e-154
Identity = 219/227 (96.48%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60
           MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSP+ID SL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60

Query: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFR+ FGQ+PDVDRLKL AAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT AH+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227

[Close]

BLAST of MELO3C009776.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DQJ3 (DNA-directed RNA polymerase V subunit 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006920 PE=3 SV=1)

HSP 1 Score: 432 bits (1111), Expect = 3.12e-152
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60
           MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60

Query: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAH 220
           SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAH
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAH 220

[Close]

BLAST of MELO3C009776.jh1 vs. ExPASy TrEMBL
Match: A0A6J1I733 (DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470215 PE=3 SV=1)

HSP 1 Score: 402 bits (1032), Expect = 1.21e-140
Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60
           MEEDGF  EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN  DIDL+L
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFR+I+GQ+PDVDRLKL AAH +DPSKR+LV+FCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227
           SIEEKQLPRMLRTDAIARYY LEKGQ+VKVTYDGDMT +HVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of MELO3C009776.jh1 vs. ExPASy TrEMBL
Match: A0A6J1GH86 (DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453892 PE=3 SV=1)

HSP 1 Score: 401 bits (1030), Expect = 2.44e-140
Identity = 199/227 (87.67%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60
           MEEDGF  EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYTIN  DIDL+L
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
           QQFR+I+GQ+ DVDRLKL AAH +DPSKR+LV+FCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFREIYGQFLDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227
           SIEEKQLPRMLRTDAIARYYGLEKGQ+VKVTYDGDMT +HVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQIVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of MELO3C009776.jh1 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 282.7 bits (722), Expect = 2.6e-76
Identity = 132/210 (62.86%), Postives = 172/210 (81.90%), Query Frame = 0


Query: 18  CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLK 77
           CLS Y+D  + ESHRY+L+RR  ++ML+DRGY ++  DI+LSL  FR ++G+ PDVDRL+
Sbjct: 13  CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query: 78  LYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAV 137
           + A H SD +K+V +VF GT  VKVNAIR++   I +++++ GLIL++QN +TNQA+KA+
Sbjct: 73  ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132

Query: 138 ELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIA 197
           ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK  LLK++SIEEKQLPR+ + DAI 
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192

Query: 198 RYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 228
           RYYGLEKGQVVKV Y G++T +HV +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[Close]

BLAST of MELO3C009776.jh1 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 265.0 bits (676), Expect = 5.5e-71
Identity = 123/204 (60.29%), Postives = 167/204 (81.86%), Query Frame = 0


Query: 23  IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAH 82
           I   + E H+Y+L+RRT +EML+DRGY ++  DI+LSLQQFR ++G++PDVD L++ A H
Sbjct: 14  ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73

Query: 83  HSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSF 142
             D SK++ VVFCGTG VKVNA+R IA  + +++++ GLIL++Q+ ITNQA+KAVELFSF
Sbjct: 74  RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133

Query: 143 KVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGL 202
           KVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPR+   D I RYYGL
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGL 193

Query: 203 EKGQVVKVTYDGDMTSAHVTYRCV 227
           E GQV+KVTY  +++ +HVTYRCV
Sbjct: 194 ETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of MELO3C009776.jh1 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 203.0 bits (515), Expect = 2.6e-52
Identity = 100/226 (44.25%), Postives = 152/226 (67.26%), Query Frame = 0


Query: 2   EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 61
           EE   E   +  + GT C+S   D G  ES R++L+R T  EML+DRGY +N  ++ L+L
Sbjct: 7   EEGCCENVESTFDDGTNCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTL 66

Query: 62  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 121
            +FR +FG+ P+++RL++     SDP K++LVVF GT  + V ++R +  QI+N   LH 
Sbjct: 67  SEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHA 126

Query: 122 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 181
           +IL++Q+++ + A KA+  F F VE F I DLLVNITKH  +P  ++L +EEK++LL+++
Sbjct: 127 MILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKH 186

Query: 182 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCV 227
           ++E+KQLP +   D+  RYYGL+K QVVK+TY  +     VTYRC+
Sbjct: 187 ALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of MELO3C009776.jh1 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-29
Identity = 73/200 (36.50%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 29  ESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPDVDRLKLYAAHHSDPSK 88
           E  R +  ++T+++ML+DRGY I   ++ ++ QQF    G     + L    A  +D S 
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 89  RVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFS--FKVEI 148
           ++ + F     V V  ++    ++   +++   IL+VQ  +T  A   +   S  F +E+
Sbjct: 66  QLYIFFPDEAKVGVKTMKMYTNRM-KSENVFRAILVVQQNLTPFARTCISEISSKFHLEV 125

Query: 149 FQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ 208
           FQ  ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+  TD IARY+GL++GQ
Sbjct: 126 FQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQ 185

Query: 209 VVKVTYDGDMTSAHVTYRCV 227
           VVK+    +    +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of MELO3C009776.jh1 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 115.9 bits (289), Expect = 4.2e-26
Identity = 72/207 (34.78%), Postives = 118/207 (57.00%), Query Frame = 0


Query: 23  IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSLQQFRDIFGQYPD-VDRLKLYAA 82
           + D   E  R F  RRTV++ML+DRGYTI   D++L  ++F   F +  + V++  L+ +
Sbjct: 1   MSDMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVS 60

Query: 83  HHS--DPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVEL 142
            +   +P+ ++ V +     V V  I+         D +H  I++V   IT  A  AV  
Sbjct: 61  ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120

Query: 143 FS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIA 202
            +    +E+F+  +L+ NIT+H L   + VL ++ K+KLL  Y++++ QLPR+L TD +A
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLA 180

Query: 203 RYYGLEKGQVVKVTYDGDMTSAHVTYR 225
           RYYGL++GQVVK+      +  + TYR
Sbjct: 181 RYYGLKRGQVVKIRRSDATSLDYYTYR 207

The following BLAST results are available for this feature:

BLAST of MELO3C009776.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443287.1	2.20e-159	100.00	PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo]	[more]
XP_004136650.1	9.62e-154	96.48	DNA-directed RNA polymerase V subunit 5A [Cucumis sativus] >KGN59468.1 hypotheti...	[more]
KAA0053863.1	6.45e-152	100.00	DNA-directed RNA polymerase V subunit 5A [Cucumis melo var. makuwa] >TYK25540.1 ...	[more]
XP_038903402.1	4.70e-145	91.19	DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] >XP_038903403.1 DNA...	[more]
XP_023539155.1	3.04e-141	88.11	DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C009776.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1J2	3.6e-75	62.86	DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPE...	[more]
Q9ZVB9	7.8e-70	60.29	DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702...	[more]
Q9M1H8	3.6e-51	44.25	DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana OX=3702 GN=NRPE...	[more]
A8XGH1	1.3e-29	33.49	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]
Q9N5K2	1.1e-28	33.01	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis ele...	[more]

BLAST of MELO3C009776.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B7M5	1.06e-159	100.00	DNA-directed RNA polymerase V subunit 5A OS=Cucumis melo OX=3656 GN=LOC103486906...	[more]
A0A0A0LCG9	4.66e-154	96.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822200 PE=3 SV=1	[more]
A0A5D3DQJ3	3.12e-152	100.00	DNA-directed RNA polymerase V subunit 5A OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1I733	1.21e-140	87.67	DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1GH86	2.44e-140	87.67	DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita moschata OX=366...	[more]

BLAST of MELO3C009776.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57080.1	2.6e-76	62.86	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT2G41340.1	5.5e-71	60.29	RNA polymerase II fifth largest subunit, D	[more]
AT3G54490.1	2.6e-52	44.25	RNA polymerase II fifth largest subunit, E	[more]
AT3G22320.1	3.1e-29	36.50	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	4.2e-26	34.78	RNA polymerase II fifth largest subunit, C	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 22..227 e-value: 1.3E-78 score: 261.2
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 154..226 e-value: 7.1E-30 score: 102.7
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 24..151 e-value: 4.2E-34 score: 119.5
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 28..155
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 152..227 e-value: 5.1E-27 score: 95.3
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 152..227
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 28..111 e-value: 3.2E-21 score: 75.8
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 11..227
None	No IPR available	PANTHER	PTHR10535:SF2	DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A	coord: 11..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009776.jh1.t1	MELO3C009776.jh1.t1	mRNA
MELO3C009776.jh1.t2	MELO3C009776.jh1.t2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity