CSPI03G32690.1 (mRNA) Cucumber (PI 183967) v1

Overview
NameCSPI03G32690.1
TypemRNA
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 29089220 .. 29089676 (-)
Sequence length216
RNA-Seq ExpressionCSPI03G32690.1
SyntenyCSPI03G32690.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTTGTAGCGTGGAAATTGAAGACGGTATATATATATATAGATCTATCCACACAAGTTCCAAGATATCTATATTCCATTATATTTATCGCATAAAAAATAATAAAGTAAAGGATTTAGTGAACAGACTACTTTTTAATATGGAATATTATTGTCTGTTCTACTTGGCTAAATCACTACTTCATAGTTAAGTATTAGTGGCAGTAGTGTGAAAGAATTAAATATAGGATAAAGTTTCCTTTCAATACCTGCAAGCTGCTGCTTGAAGGAAGTTAAGTGGTCTCAGTTGGGAATGGGATACACCAATCTCATCATCACGGTAAGTGGGATAGAGATTTTCTTAACTGTAGGCATAATAATTGAGATATCTGAAGCAAGCAATGCAGTGGCCAATGGCGAGCGATCAAGTCAAAGCTCACAAAATAGGTACCCTGTTAAGATCTCAAACAGTTAG

mRNA sequence

ATGAAGTTTGTAGCGTGGAAATTGAAGACGGAAGTTAAGTGGTCTCAGTTGGGAATGGGATACACCAATCTCATCATCACGGTAAGTGGGATAGAGATTTTCTTAACTGTAGGCATAATAATTGAGATATCTGAAGCAAGCAATGCAGTGGCCAATGGCGAGCGATCAAGTCAAAGCTCACAAAATAGGTACCCTGTTAAGATCTCAAACAGTTAG

Coding sequence (CDS)

ATGAAGTTTGTAGCGTGGAAATTGAAGACGGAAGTTAAGTGGTCTCAGTTGGGAATGGGATACACCAATCTCATCATCACGGTAAGTGGGATAGAGATTTTCTTAACTGTAGGCATAATAATTGAGATATCTGAAGCAAGCAATGCAGTGGCCAATGGCGAGCGATCAAGTCAAAGCTCACAAAATAGGTACCCTGTTAAGATCTCAAACAGTTAG

Protein sequence

MKFVAWKLKTEVKWSQLGMGYTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSSQNRYPVKISNS*
Homology
[Close]
BLAST of CSPI03G32690.1 vs. ExPASy TrEMBL
Match: A0A0A0LDU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736600 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.1e-28
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MKFVAWKLKTEVKWSQLGMGYTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS 60
          MKFV+WKLKTEVKWSQLGMG+TNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS
Sbjct: 1  MKFVSWKLKTEVKWSQLGMGFTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS 60

Query: 61 QNRYPVKISNS 72
          QNRYPVKISNS
Sbjct: 61 QNRYPVKISNS 71

[Close]
BLAST of CSPI03G32690.1 vs. NCBI nr
Match: KGN58912.1 (hypothetical protein Csa_000819 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 8.6e-28
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MKFVAWKLKTEVKWSQLGMGYTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS 60
          MKFV+WKLKTEVKWSQLGMG+TNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS
Sbjct: 1  MKFVSWKLKTEVKWSQLGMGFTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS 60

Query: 61 QNRYPVKISNS 72
          QNRYPVKISNS
Sbjct: 61 QNRYPVKISNS 71

The following BLAST results are available for this feature:
BLAST of CSPI03G32690.1 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G32690.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDU54.1e-2897.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736600 PE=4 SV=1[more]
BLAST of CSPI03G32690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58912.18.6e-2897.18hypothetical protein Csa_000819 [Cucumis sativus][more]
BLAST of CSPI03G32690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..71

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI03G32690CSPI03G32690gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI03G32690.1.cds2CSPI03G32690.1.cds2CDS
CSPI03G32690.1.cds1CSPI03G32690.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI03G32690.1CSPI03G32690.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane