CSPI03G32690 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G32690
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 29089220 .. 29089676 (-)
RNA-Seq Expression	CSPI03G32690
Synteny	CSPI03G32690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTGTAGCGTGGAAATTGAAGACGGTATATATATATATAGATCTATCCACACAAGTTCCAAGATATCTATATTCCATTATATTTATCGCATAAAAAATAATAAAGTAAAGGATTTAGTGAACAGACTACTTTTTAATATGGAATATTATTGTCTGTTCTACTTGGCTAAATCACTACTTCATAGTTAAGTATTAGTGGCAGTAGTGTGAAAGAATTAAATATAGGATAAAGTTTCCTTTCAATACCTGCAAGCTGCTGCTTGAAGGAAGTTAAGTGGTCTCAGTTGGGAATGGGATACACCAATCTCATCATCACGGTAAGTGGGATAGAGATTTTCTTAACTGTAGGCATAATAATTGAGATATCTGAAGCAAGCAATGCAGTGGCCAATGGCGAGCGATCAAGTCAAAGCTCACAAAATAGGTACCCTGTTAAGATCTCAAACAGTTAG

mRNA sequence

ATGAAGTTTGTAGCGTGGAAATTGAAGACGGAAGTTAAGTGGTCTCAGTTGGGAATGGGATACACCAATCTCATCATCACGGTAAGTGGGATAGAGATTTTCTTAACTGTAGGCATAATAATTGAGATATCTGAAGCAAGCAATGCAGTGGCCAATGGCGAGCGATCAAGTCAAAGCTCACAAAATAGGTACCCTGTTAAGATCTCAAACAGTTAG

Coding sequence (CDS)

ATGAAGTTTGTAGCGTGGAAATTGAAGACGGAAGTTAAGTGGTCTCAGTTGGGAATGGGATACACCAATCTCATCATCACGGTAAGTGGGATAGAGATTTTCTTAACTGTAGGCATAATAATTGAGATATCTGAAGCAAGCAATGCAGTGGCCAATGGCGAGCGATCAAGTCAAAGCTCACAAAATAGGTACCCTGTTAAGATCTCAAACAGTTAG

Protein sequence

MKFVAWKLKTEVKWSQLGMGYTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSSQNRYPVKISNS*

Homology

[Close]

BLAST of CSPI03G32690 vs. ExPASy TrEMBL
Match: A0A0A0LDU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736600 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.1e-28
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MKFVAWKLKTEVKWSQLGMGYTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS 60
          MKFV+WKLKTEVKWSQLGMG+TNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS
Sbjct: 1  MKFVSWKLKTEVKWSQLGMGFTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS 60

Query: 61 QNRYPVKISNS 72
          QNRYPVKISNS
Sbjct: 61 QNRYPVKISNS 71

[Close]

BLAST of CSPI03G32690 vs. NCBI nr
Match: KGN58912.1 (hypothetical protein Csa_000819 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 8.6e-28
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MKFVAWKLKTEVKWSQLGMGYTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS 60
          MKFV+WKLKTEVKWSQLGMG+TNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS
Sbjct: 1  MKFVSWKLKTEVKWSQLGMGFTNLIITVSGIEIFLTVGIIIEISEASNAVANGERSSQSS 60

Query: 61 QNRYPVKISNS 72
          QNRYPVKISNS
Sbjct: 61 QNRYPVKISNS 71

The following BLAST results are available for this feature:

BLAST of CSPI03G32690 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G32690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDU5	4.1e-28	97.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736600 PE=4 SV=1	[more]

BLAST of CSPI03G32690 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58912.1	8.6e-28	97.18	hypothetical protein Csa_000819 [Cucumis sativus]	[more]

BLAST of CSPI03G32690 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G32690.1	CSPI03G32690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane