Cucsat.G15684.T24 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15684.T24
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionYrdC-like domain-containing protein
Locationctg2009: 5777795 .. 5781526 (+)
RNA-Seq ExpressionCucsat.G15684.T24
SyntenyCucsat.G15684.T24
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTATTTATTTATTTATTTATGTAATGATGAAAAAAGAAAATCCAATTGAAATGTGACGTGGCATTCCAGGTGGGAAGTTCTATCTATGAACTGTGCCTCCTCTCCGATCACAGCTTCTCCCCTCTCTTTTCCTTCTCAGTTCCTAATTCCGGCGGTGCACTCACGCTGGTTCCCCAATCTCCCAAATGATCATCAATGTCAAACCCGGCCTACATCCTTCTACTGCTTCTTCTCTCTCTTCCTCTCGGGCTTTCGCACCAATACGCTTCCCTTCGCCTCCATCTGCCACTCCTTTCGACGGTTTTGAAACTTCCCGCCGCCTCCAGGTCCTCGCCATGGTTGTCAAGCGGAGTCCTAAGCGCCTCAAGTACTCGGCTCCACGCTTCACCAAGGTCCTCTCCTTCCTAACTACTTCTGTGTTTTTTTTTCAGCTTCATTATACCATGCCCTCGCTCCTACTTGTTCTATATGAAACTCTTATCGCTATTGCTCCGGATAGAATATCTAGTGGTGGAGGTAGAGTTGCGACAGGTGAATTAAGCATTTACGCTGTTTTCGTCGCTTATTTATTTTTACACTCTAGATAGATAATTAGTAAATTTTGCAGGAGATTGTGTTGTGGATTTGAACTGTTGGAAACACTTCTGACTGGTTAAGATTTTCCCTTCTGCGTGTGTGCGTTTCTTGTTGGGAGAGGGTGATATTATATGAACACTACTCTACTTCCACCGTGATCATATTCCAGTTTGGGATGCTTTATTGCTAGTTTTTGTTGGGAGTTAATTCAGTTGGGAATGAAATTTGGAAATTAATGAAGTTATTAGACTTGTGTTATTGATATGCTTAAAGTTACTATGGTCTTTACCAGGAAGGGAGCTTGATATATGTCAAAGCTGAATCAGGAGAGGACGGCTGGAAATTAGACCCTATTGTTAATCTTCTAAAAGAGGGTGCAGTTGGGGTTATTCCTACTGATACCGTGTATTTCCCTCTTACTTTATTTCACTCTCACCTTTTCAGATTTTTTTATTGTTATCATTGCTGACTCTCAAGTTGAAATTGGACGCTTGAACGAATAAATTTGTTCATAGTTAGAAAGAATCATATTTTCAATTTTTGTGTCATGCCACTCAGAAATTCAGAATTTAGGTTGTATTACCTCTTTTGGGAACAAGCTTCAAACTTCTGCAATAAATTTTTGGTTTTCCATAAATATACTTGCAATATTATTGGTTCCTTAAAATTGATTGTATCTGTATGGATCTTCTGATTGACGGATGAGAGTTCTCAAGGAAATGTAGAAGGTTTAATTTTGTGATCTTAAAGTTTACAGTGATCAGGAAAGCAGCAGGATAAATTCCTTTTTTGTTCTCACATTATTTATTATGATCTTGGTGGTTCATTTCATGAGTGTTGATTTCACTGCATTTTTGTTCCCTTGTGTACGTCTTCTTTGTCTGTCTTTTTATTTTTAACGGGTATGTATGCTTGTATTTTTCAAGGTATGGAATTGTTTGTGATCTGAAGAACCCCTCAGCCATTGAACGAATGCAGAGGTTGAAGTTGTTAATTTGTTTTGCTAGAAACTGTATTTGGTTAGATACTTCAGCTTCTCTCTCCTGCTGTTAAAGTTTCTTGTTTTGTTTAATGCAGGATCAAGAATATAGAGCCTACAAAGGTATCGTTATTTTTTACAATCTCTTTTATGTGCTTTACGATAATGCTCATATGGTCCTTCAAACTGTTGAACATCAATGCTCAAATGCGTATAATAAAGTTACTGAACAAGATGGTTTATTCTACTTAGATCCCTCATTTCTGTCTTCTATACAACCCACCTTTTCATTTTTCCATTATGCTTCTTAATTTTTACTTCTAATTAACTATGCAGCCTCTGAGCATTTTGTGCCGCTCCTTCCGGGACATTGATAAATATACTACAGGGTTTCCTCGTGGTGATGGCCAAGGCCATTCAAGTATATTTCGCATGGTTAAGCATTGTCTACCTGGACCAGTGAGTGGTTCTGCTAATCCTTCCTTATGACGATAACTCCATATTATCCCTCCTTCGGATTGCATGGTGTCCCAAATGACCTCTAGTACCTTTACTTTCGTAATCATGTAGATGTGAAAAAAAAAGACATTTTCTGGTGTTGTCCTATCTTGATACATTATAGTTCGCAGTGAAACTTTCAATGTACATTGAATTCTTTAACTATAGCTATTGATTTTTGAGAGTTCTTGTGTAACAGTACACCTTCATCTTGACTGCAAGCAAAGAGCTGCCTAAACATTGTATAAGGTATGGCACGACCACTGCAAAATATGCATCAAGGAAGAATGTAGGTGTGCGCATTCCTGATGATTCAATTTGTCAAGCAATACTGGAAAAGATGGACGACCCATTGATATCCACAAGGTTAGAACAATTAATACTCTTCTAATTCTCTCCACCCTCTTAACAAATTTCTTGATTGGTTTAGGGGACTTAAGACCTTCTGGATTGATCATCTATTTTTCATGCCACAATTCCCCATGAGACAGTTTTCAATTTGGTGCAATCGACCATCACTATTATAACAATATTCTCTCCACTTTTTCTATCCAGTTCTGGATTGAGCACTGGAAGGGGAGACTGCTTGTGTTTATATTAATTGGCTTAAGATAGCTGTAATTATTGAATTCTTACAATAATGATGGGTAAATAAGTACTTCGGAAGTGATGATTTGTTCAAACTTCAATCTATACATTTGCTGTTCTTTCAGTGTCAAATCCCCGAAGGAAAATGAGTGGTTGCTCGACCCAGTTGTCATAGCTGATATCTATGGACAAGAGGTATGAATAAATCTTACAGAGGCTGTGTGATTGTTTATGCTAATTTCTGCAGTTATGCCATTTCCCCCCCTGAAAGCGGGTTGTATGCTTCAAATAGGGTCTGGATTTTGTGGTGGATGGTGGAGTTAGAGTGGCAGATCCATCCACTGTAGTAGATATGACCATCACTCCTCCAAAGATTTTGCGGCAAGGGAAGGTAATTCATTAGTCATTTCCTTTCTAGTATGCTACCCCCTAAATTATGATTACACTCATCTCTTGCAATAACGTATGGAGCAGTATGGTAATGAATAGTACTGTCATTCAGTCAAAAACAATATTTTCTATTAACTTCAGATGAAACAGAATCTGAAGTTGATCATTCATTTCTTTACCATCCTGATCCCAATGATCAATCCTCATGGAATGGAATAAGCACCATCATTTCAAGTTTCTGTTGGATTTGGATGATGAATTATTTTTCATTGTCTTCCCACTTTTTGCTCGAATGATTTGCAACGTCCAGGGAGCTAGACTGCCATGGATGGTAGCTGAAGGTGATGACGAACCAAACATAGGTGAAGATATCCGCACCTGAACTTGCCATTTTGTAGATAATCCACTGAACATATTGCATGGAAGACATGATCCAGTTGCAGTTCACAAACAAATCTGGTGGAGTTTGTACAGTGTTTGCTATTGGTATATAAACTAACACTGAAAGAGGGTGGGCCTTTCTAAGTTGAAGATCAAATGTTGCTATACTGCTTGTCTTAGAGGTTTTTTTATCAACTTGAAAATTAGATTCTCTTTTACCTACATGTAATGTAACTCATAAATATAGGCAAATGCAATCCTCATTCTAAAATTTTCTCTTAGAAGAACAGAAGAATTTACATTTTCATTTGGGGAAATTT

Coding sequence (CDS)

ATGCAGCCTCTGAGCATTTTGTGCCGCTCCTTCCGGGACATTGATAAATATACTACAGGGTTTCCTCGTGGTGATGGCCAAGGCCATTCAAGTATATTTCGCATGGTTAAGCATTGTCTACCTGGACCATACACCTTCATCTTGACTGCAAGCAAAGAGCTGCCTAAACATTGTATAAGGTATGGCACGACCACTGCAAAATATGCATCAAGGAAGAATGTAGGTGTGCGCATTCCTGATGATTCAATTTGTCAAGCAATACTGGAAAAGATGGACGACCCATTGATATCCACAAGTGTCAAATCCCCGAAGGAAAATGAGTGGTTGCTCGACCCAGTTGTCATAGCTGATATCTATGGACAAGAGGGTCTGGATTTTGTGGTGGATGGTGGAGTTAGAGTGGCAGATCCATCCACTGTAGTAGATATGACCATCACTCCTCCAAAGATTTTGCGGCAAGGGAAGGTAATTCATTAG

Protein sequence

MQPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKVIH
Homology
[Close]
BLAST of Cucsat.G15684.T24 vs. ExPASy Swiss-Prot
Match: P0AFR5 (Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yciO PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-16
Identity = 46/150 (30.67%), Postives = 82/150 (54.67%), Query Frame = 0 

Query: 5   SILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYGTT 64
           +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE+P+  ++    
Sbjct: 66  TLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ---- 125

Query: 65  TAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQEGL 124
                 RK +G+R+P + I QA+LE + +P++STS+  P       DP  I D   ++ +
Sbjct: 126 ----EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRL-EKQV 185

Query: 125 DFVVDGGVRVADPSTVVDMTITPPKILRQG 155
           D ++ GG     P+TV+D+T   P ++R+G
Sbjct: 186 DLIIHGGYLGQKPTTVIDLTDDTPVVVREG 198

[Close]
BLAST of Cucsat.G15684.T24 vs. ExPASy Swiss-Prot
Match: P0AFR4 (Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-16
Identity = 46/150 (30.67%), Postives = 82/150 (54.67%), Query Frame = 0 

Query: 5   SILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYGTT 64
           +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE+P+  ++    
Sbjct: 66  TLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ---- 125

Query: 65  TAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQEGL 124
                 RK +G+R+P + I QA+LE + +P++STS+  P       DP  I D   ++ +
Sbjct: 126 ----EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRL-EKQV 185

Query: 125 DFVVDGGVRVADPSTVVDMTITPPKILRQG 155
           D ++ GG     P+TV+D+T   P ++R+G
Sbjct: 186 DLIIHGGYLGQKPTTVIDLTDDTPVVVREG 198

[Close]
BLAST of Cucsat.G15684.T24 vs. ExPASy Swiss-Prot
Match: P0AFR6 (Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-16
Identity = 46/150 (30.67%), Postives = 82/150 (54.67%), Query Frame = 0 

Query: 5   SILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYGTT 64
           +++CR   ++  Y+           +  FR++K+  PG YTFIL  +KE+P+  ++    
Sbjct: 66  TLMCRDLSELSTYSF--------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ---- 125

Query: 65  TAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQEGL 124
                 RK +G+R+P + I QA+LE + +P++STS+  P       DP  I D   ++ +
Sbjct: 126 ----EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRL-EKQV 185

Query: 125 DFVVDGGVRVADPSTVVDMTITPPKILRQG 155
           D ++ GG     P+TV+D+T   P ++R+G
Sbjct: 186 DLIIHGGYLGQKPTTVIDLTDDTPVVVREG 198

[Close]
BLAST of Cucsat.G15684.T24 vs. ExPASy Swiss-Prot
Match: P45103 (Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_1198 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-15
Identity = 46/127 (36.22%), Postives = 77/127 (60.63%), Query Frame = 0 

Query: 29  HSSIFRMVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAIL 88
           +++ +R++K+  PG YTFILTA+KELP+  +         + RK +G+R+PD+ I   +L
Sbjct: 82  NNTAYRLIKNNTPGRYTFILTATKELPRRLMT--------SKRKTIGLRVPDNKIALDLL 141

Query: 89  EKMDDPLISTSVKSP-KENEWLLDPVVIADIYGQEGLDFVVDGGVRVADPSTVVDMTITP 148
             + +P++S S+  P +E+    DP  I D   +  +D ++ GG    +P+TVVD+T   
Sbjct: 142 SALGEPILSCSLMLPNEEHTTQSDPEEIRDRL-EHQVDLIIHGGYLGQEPTTVVDLTEES 199

Query: 149 PKILRQG 155
           P ILR+G
Sbjct: 202 PVILREG 199

[Close]
BLAST of Cucsat.G15684.T24 vs. ExPASy Swiss-Prot
Match: Q9UYB2 (Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=sua5 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-05
Identity = 37/121 (30.58%), Postives = 58/121 (47.93%), Query Frame = 0 

Query: 35  MVKHCLPGPYTFILTASKELPKHCIRYGTTTAKYASRKNVGVRIPDDSICQAILEKMDDP 94
           + K   PGP T +L  S+ +P+  I  G  T        V VR+P   I   ++E  + P
Sbjct: 88  LAKRFWPGPLTLVLPKSEVVPR-VITGGLDT--------VAVRMPAHEIALKLIELSERP 147

Query: 95  LISTSVKSPKENEWLLDPVVIADIYGQEGLDFVVDGG-VRVADPSTVVDMTITPPKILRQ 154
           + + S     +        V  D YG+  ++ ++DGG  R+   STV+D+T  PP +LR 
Sbjct: 148 IAAPSANISGKPSPTSAHHVAEDFYGK--IECIIDGGETRIGVESTVIDLTEWPPVLLRP 197

[Close]
BLAST of Cucsat.G15684.T24 vs. NCBI nr
Match: XP_031739482.1 (uncharacterized protein LOC101214648 isoform X1 [Cucumis sativus])

HSP 1 Score: 317 bits (813), Expect = 6.24e-107
Identity = 153/155 (98.71%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 2   QPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 61
           +PLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY
Sbjct: 133 KPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 192

Query: 62  GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 121
           GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ
Sbjct: 193 GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 252

Query: 122 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKV 156
           EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK+
Sbjct: 253 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGKM 287

[Close]
BLAST of Cucsat.G15684.T24 vs. NCBI nr
Match: XP_004145661.1 (uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hypothetical protein Csa_017456 [Cucumis sativus])

HSP 1 Score: 317 bits (812), Expect = 8.28e-107
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0 

Query: 2   QPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 61
           +PLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY
Sbjct: 133 KPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 192

Query: 62  GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 121
           GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ
Sbjct: 193 GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 252

Query: 122 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 155
           EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 253 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 286

[Close]
BLAST of Cucsat.G15684.T24 vs. NCBI nr
Match: XP_008450106.1 (PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo])

HSP 1 Score: 311 bits (796), Expect = 2.24e-104
Identity = 149/154 (96.75%), Postives = 153/154 (99.35%), Query Frame = 0 

Query: 2   QPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 61
           +PLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPKHCIRY
Sbjct: 133 KPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKHCIRY 192

Query: 62  GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 121
           GTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLDPVVIADIYGQ
Sbjct: 193 GTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLDPVVIADIYGQ 252

Query: 122 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 155
           EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 253 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 286

[Close]
BLAST of Cucsat.G15684.T24 vs. NCBI nr
Match: TYK05316.1 (yrdC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 311 bits (796), Expect = 9.49e-104
Identity = 149/154 (96.75%), Postives = 153/154 (99.35%), Query Frame = 0 

Query: 2   QPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 61
           +PLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPKHCIRY
Sbjct: 177 KPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKHCIRY 236

Query: 62  GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 121
           GTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLDPVVIADIYGQ
Sbjct: 237 GTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLDPVVIADIYGQ 296

Query: 122 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 155
           EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 297 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 330

[Close]
BLAST of Cucsat.G15684.T24 vs. NCBI nr
Match: KAA0042916.1 (yrdC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (794), Expect = 2.32e-103
Identity = 149/153 (97.39%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 3   PLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYG 62
           PLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPKHCIRYG
Sbjct: 184 PLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKHCIRYG 243

Query: 63  TTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQE 122
           TTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLDPVVIADIYGQE
Sbjct: 244 TTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLDPVVIADIYGQE 303

Query: 123 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 155
           GLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 304 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 336

[Close]
BLAST of Cucsat.G15684.T24 vs. ExPASy TrEMBL
Match: A0A0A0LBV9 (YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 PE=3 SV=1)

HSP 1 Score: 317 bits (812), Expect = 4.01e-107
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0 

Query: 2   QPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 61
           +PLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY
Sbjct: 133 KPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 192

Query: 62  GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 121
           GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ
Sbjct: 193 GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 252

Query: 122 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 155
           EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 253 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 286

[Close]
BLAST of Cucsat.G15684.T24 vs. ExPASy TrEMBL
Match: A0A1S3BMX4 (uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 PE=3 SV=1)

HSP 1 Score: 311 bits (796), Expect = 1.09e-104
Identity = 149/154 (96.75%), Postives = 153/154 (99.35%), Query Frame = 0 

Query: 2   QPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 61
           +PLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPKHCIRY
Sbjct: 133 KPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKHCIRY 192

Query: 62  GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 121
           GTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLDPVVIADIYGQ
Sbjct: 193 GTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLDPVVIADIYGQ 252

Query: 122 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 155
           EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 253 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 286

[Close]
BLAST of Cucsat.G15684.T24 vs. ExPASy TrEMBL
Match: A0A5D3C4N1 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001410 PE=3 SV=1)

HSP 1 Score: 311 bits (796), Expect = 4.60e-104
Identity = 149/154 (96.75%), Postives = 153/154 (99.35%), Query Frame = 0 

Query: 2   QPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRY 61
           +PLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPKHCIRY
Sbjct: 177 KPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKHCIRY 236

Query: 62  GTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQ 121
           GTTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLDPVVIADIYGQ
Sbjct: 237 GTTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLDPVVIADIYGQ 296

Query: 122 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 155
           EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 297 EGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 330

[Close]
BLAST of Cucsat.G15684.T24 vs. ExPASy TrEMBL
Match: A0A5A7TLP4 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G004380 PE=3 SV=1)

HSP 1 Score: 310 bits (794), Expect = 1.12e-103
Identity = 149/153 (97.39%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 3   PLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIRYG 62
           PLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPKHCIRYG
Sbjct: 184 PLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKHCIRYG 243

Query: 63  TTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYGQE 122
           TTTAKYASRKNVGVRIPDD+ICQAILEKMD+PLISTSVKSPKENEWLLDPVVIADIYGQE
Sbjct: 244 TTTAKYASRKNVGVRIPDDAICQAILEKMDNPLISTSVKSPKENEWLLDPVVIADIYGQE 303

Query: 123 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 155
           GLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 304 GLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 336

[Close]
BLAST of Cucsat.G15684.T24 vs. ExPASy TrEMBL
Match: A0A6J1DV85 (uncharacterized protein LOC111023411 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023411 PE=3 SV=1)

HSP 1 Score: 302 bits (774), Expect = 1.90e-101
Identity = 145/155 (93.55%), Postives = 150/155 (96.77%), Query Frame = 0 

Query: 1   MQPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYTFILTASKELPKHCIR 60
           ++PLSILC SFRD+DKYTTGFPRGDGQGHS+IFRMVKHCLPGPYTFILTASKELPK CIR
Sbjct: 135 LKPLSILCHSFRDVDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKPCIR 194

Query: 61  YGTTTAKYASRKNVGVRIPDDSICQAILEKMDDPLISTSVKSPKENEWLLDPVVIADIYG 120
           +GTTTAKYASRKNVGVRIPDD ICQAILEKMD PLISTSVK PKENEWLLDPVVIADIYG
Sbjct: 195 FGTTTAKYASRKNVGVRIPDDIICQAILEKMDSPLISTSVKCPKENEWLLDPVVIADIYG 254

Query: 121 QEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 155
           QEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK
Sbjct: 255 QEGLDFVVDGGVRVADPSTVVDMTITPPKILRQGK 289

The following BLAST results are available for this feature:
BLAST of Cucsat.G15684.T24 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0AFR54.5e-1630.67Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700... [more]
P0AFR44.5e-1630.67Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO P... [more]
P0AFR64.5e-1630.67Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1[more]
P451031.0e-1536.22Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / D... [more]
Q9UYB21.6e-0530.58Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=2728... [more]
BLAST of Cucsat.G15684.T24 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031739482.16.24e-10798.71uncharacterized protein LOC101214648 isoform X1 [Cucumis sativus][more]
XP_004145661.18.28e-10799.35uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hy... [more]
XP_008450106.12.24e-10496.75PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo][more]
TYK05316.19.49e-10496.75yrdC domain-containing protein [Cucumis melo var. makuwa][more]
KAA0042916.12.32e-10397.39yrdC domain-containing protein [Cucumis melo var. makuwa][more]
BLAST of Cucsat.G15684.T24 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBV94.01e-10799.35YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 P... [more]
A0A1S3BMX41.09e-10496.75uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 ... [more]
A0A5D3C4N14.60e-10496.75YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TLP41.12e-10397.39YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1DV851.90e-10193.55uncharacterized protein LOC111023411 isoform X2 OS=Momordica charantia OX=3673 G... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006070YrdC-like domainPFAMPF01300Sua5_yciO_yrdCcoord: 2..154
e-value: 4.2E-28
score: 98.0
IPR006070YrdC-like domainPROSITEPS51163YRDCcoord: 1..156
score: 14.978655
NoneNo IPR availableGENE3D3.90.870.10DHBP synthasecoord: 1..157
e-value: 7.1E-34
score: 118.6
NoneNo IPR availablePANTHERPTHR42828DHBP SYNTHASE RIBB-LIKE ALPHA/BETA DOMAIN-CONTAINING PROTEINcoord: 2..155
IPR017945DHBP synthase RibB-like alpha/beta domain superfamilySUPERFAMILY55821YrdC/RibBcoord: 3..156

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15684Cucsat.G15684gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T24.E1Cucsat.G15684.T24.E1exon
Cucsat.G15684.T24.E2Cucsat.G15684.T24.E2exon
Cucsat.G15684.T24.E3Cucsat.G15684.T24.E3exon
Cucsat.G15684.T24.E4Cucsat.G15684.T24.E4exon
Cucsat.G15684.T24.E5Cucsat.G15684.T24.E5exon
Cucsat.G15684.T24.E6Cucsat.G15684.T24.E6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T24.C1Cucsat.G15684.T24.C1CDS
Cucsat.G15684.T24.C2Cucsat.G15684.T24.C2CDS
Cucsat.G15684.T24.C3Cucsat.G15684.T24.C3CDS
Cucsat.G15684.T24.C4Cucsat.G15684.T24.C4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T24Cucsat.G15684.T24-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0016740 transferase activity