CsaV3_4G010300.1 (mRNA) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTGTTAGTCCTCCTCATCTTTTAGCTCCGATCGGAAGAATTGAAGCCAATGTATCTGTTTGTCGTTATTTGAATAAATGAATTGCAATATCTGTTTTAATCACAATCAGCTGTATAATCTTAATTACTCTCATTAGTTCATAATCATTTCAACCACTTGTTTAGTTAAGCTTTGATTCGAATTTTGTTAACATAATTTTCAAAATCTACTTTTACATCGAGTTGTGATATTACAAAGATAAAATATGTATTGAGTAAACTAATTTTGTGTGTCGTAGATAAACTCTAAAAAAATAGTTTTATGAACATTGAAAGTTGGAAGAGAGAGGTTTGGGGATTGTCATTTTGAAAATAGGGAGGGACAAGAATTGGAAAGTGTCGGTTGGATTTTAGATTAATTACTAATGATTATTATATAATGACTATTTTTCAATTATTGTGAAGTCTATTCATTCTATTATTGCAATAATTTCTCTCAAATTTTACTTTTTTTTTTATTAATAAAATAAATGTGAGGATGAGAGAAGAGAGCAGATGCTATAGTTCTTTAAGCTACGCTCGTGATCATTCACAGAGCACATATTCGCATGCACCCCAAAAAAGTTATCATTAGTATCATTACTATTACTATCAACTATTAATTTATATTCTACACTACTATTAAATTATGTTGAATAAAGGTAAGCAAACCTAAAATAGTAGTATTTGTAGTAGCAAGGGAGAAGAATATGAAATATCCAGCAAAGATGTTGGAGTGGTGGCGATTTGACTAATTTTTGGTTGTTGTTGGTAGGTTAGTTTAGGAATTTGTAAGTTTGACACACTTCTTCGATTTTGTAAATATAACAAAAATTAAGTTTAATCCAAGTGATATCTAAGCGAATATGGATGCACACAATTATTTTATTGCAAATTTAATATAGAAAAGATGTGGTCTCTCTCCTTTCGCCACATGGATGACATTCAACCAGCTGAGGGCCAAGTTAACCAAACTCGAACAATCGTTTCAGTTTTCAGTTTGCCTATGTACTTGATTTGGTTTCGGTTCGCATAGATCATTCACCAATTTAAGTAGTTCAGTTCTAGTGTTTTAAGAAATAACCAAGTCGTTTAACTTCCCTCCTATATTTAGTTAGACCAAAAAAATATTGTAGACATAGTAAAAATTGGCTTCTAGATATAGAAAGACCAGAAGTCTACAACGTTCAACTAAAACCACAATACATGAAACAGTCAATTACACCAAATTGAAGATTTTCCTCAGTTTTTTCTATAATCAGTGTCTCATCCCCTTTTACTTGTATCACTAATTTAGAGCCGTTTAATAACCATTCTCGTTTTTGAATTTTTGTTTTACTATTTCTTATATTTCATGTTTTTTGCTTTCTTTAAGAACTAGAATCAAGAATTTTGAAAGCGTATGAGATTTAAGGAAGAAGATTTGGTTTGAGTCAATCTTCGAAAGAAGGAATTTCCAGATCAATGAGATTTGAAGTTAAACCCAAAAGACGATGGTACTCTTTCCAAGTAATTAAAAAAATCAATGACAATAACTACCGGATTGATTTTAAAGATAAATATGGGTGTGAGTGCTACTTTTAATGTTTATGAGTTAACTCCTTTTGATGCAGATAACGAACTTGATTCTATGACGGATTATTCAAAAGTGGGAGAAGATGATATGAATCAGGATACCCTTGTATTGGAGTCAATTGACGCTACAGGATGCAATCAATTGACATTTGAAATCTCAAGATTTCAAGACTCTTTTACAAGGTTTTGATTTGAATTCAAAGACGAATCCTTCGATAAATAGAAAAATGAAGCATCGAATTATTAATTAGATGTTATTTAATAATTGTGATGTACTTTTAATATTTTTTATTTCGTTCTTTTTAATAACATTTAAGTAGA ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTATAACGAACTTGATTCTATGACGGATTATTCAAAAGTGGGAGAAGATGATATGAATCAGGATACCCTTGTATTGGAGTCAATTGACGCTACAGGATGCAATCAATTGACATTTGAAATCTCAAGATTTCAAGACTCTTTTACAAGGTTTTGA ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTATAACGAACTTGATTCTATGACGGATTATTCAAAAGTGGGAGAAGATGATATGAATCAGGATACCCTTGTATTGGAGTCAATTGACGCTACAGGATGCAATCAATTGACATTTGAAATCTCAAGATTTCAAGACTCTTTTACAAGGTTTTGA MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPYNELDSMTDYSKVGEDDMNQDTLVLESIDATGCNQLTFEISRFQDSFTRF* Homology
BLAST of CsaV3_4G010300.1 vs. NCBI nr
Match: KAE8649335.1 (hypothetical protein Csa_014907 [Cucumis sativus]) HSP 1 Score: 336.3 bits (861), Expect = 1.5e-88 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of CsaV3_4G010300.1 vs. NCBI nr
Match: KAA0042447.1 (hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK03509.1 hypothetical protein E5676_scaffold121G001310 [Cucumis melo var. makuwa]) HSP 1 Score: 198.7 bits (504), Expect = 3.8e-47 Identity = 96/115 (83.48%), Postives = 101/115 (87.83%), Query Frame = 0
BLAST of CsaV3_4G010300.1 vs. NCBI nr
Match: KAG7011063.1 (hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 145.6 bits (366), Expect = 3.8e-31 Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = 0
BLAST of CsaV3_4G010300.1 vs. NCBI nr
Match: KAG6607065.1 (hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 143.3 bits (360), Expect = 1.9e-30 Identity = 71/117 (60.68%), Postives = 85/117 (72.65%), Query Frame = 0
BLAST of CsaV3_4G010300.1 vs. NCBI nr
Match: KGN53798.1 (hypothetical protein Csa_014747 [Cucumis sativus]) HSP 1 Score: 124.0 bits (310), Expect = 1.2e-24 Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 0
BLAST of CsaV3_4G010300.1 vs. ExPASy TrEMBL
Match: A0A0A0KVZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 4.7e-59 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
BLAST of CsaV3_4G010300.1 vs. ExPASy TrEMBL
Match: A0A5D3BZL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001310 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.9e-47 Identity = 96/115 (83.48%), Postives = 101/115 (87.83%), Query Frame = 0
BLAST of CsaV3_4G010300.1 vs. ExPASy TrEMBL
Match: A0A0A0KW62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 5.8e-25 Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 0
BLAST of CsaV3_4G010300.1 vs. ExPASy TrEMBL
Match: A0A5D3BS53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002320 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16 Identity = 51/116 (43.97%), Postives = 66/116 (56.90%), Query Frame = 0
BLAST of CsaV3_4G010300.1 vs. ExPASy TrEMBL
Match: A0A6J1G927 (uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC111452044 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 5.4e-15 Identity = 55/121 (45.45%), Postives = 68/121 (56.20%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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