CsaV3_4G010300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G010300
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 8072913 .. 8075169 (-)
RNA-Seq ExpressionCsaV3_4G010300
SyntenyCsaV3_4G010300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTGTTAGTCCTCCTCATCTTTTAGCTCCGATCGGAAGAATTGAAGCCAATGTATCTGTTTGTCGTTATTTGAATAAATGAATTGCAATATCTGTTTTAATCACAATCAGCTGTATAATCTTAATTACTCTCATTAGTTCATAATCATTTCAACCACTTGTTTAGTTAAGCTTTGATTCGAATTTTGTTAACATAATTTTCAAAATCTACTTTTACATCGAGTTGTGATATTACAAAGATAAAATATGTATTGAGTAAACTAATTTTGTGTGTCGTAGATAAACTCTAAAAAAATAGTTTTATGAACATTGAAAGTTGGAAGAGAGAGGTTTGGGGATTGTCATTTTGAAAATAGGGAGGGACAAGAATTGGAAAGTGTCGGTTGGATTTTAGATTAATTACTAATGATTATTATATAATGACTATTTTTCAATTATTGTGAAGTCTATTCATTCTATTATTGCAATAATTTCTCTCAAATTTTACTTTTTTTTTTATTAATAAAATAAATGTGAGGATGAGAGAAGAGAGCAGATGCTATAGTTCTTTAAGCTACGCTCGTGATCATTCACAGAGCACATATTCGCATGCACCCCAAAAAAGTTATCATTAGTATCATTACTATTACTATCAACTATTAATTTATATTCTACACTACTATTAAATTATGTTGAATAAAGGTAAGCAAACCTAAAATAGTAGTATTTGTAGTAGCAAGGGAGAAGAATATGAAATATCCAGCAAAGATGTTGGAGTGGTGGCGATTTGACTAATTTTTGGTTGTTGTTGGTAGGTTAGTTTAGGAATTTGTAAGTTTGACACACTTCTTCGATTTTGTAAATATAACAAAAATTAAGTTTAATCCAAGTGATATCTAAGCGAATATGGATGCACACAATTATTTTATTGCAAATTTAATATAGAAAAGATGTGGTCTCTCTCCTTTCGCCACATGGATGACATTCAACCAGCTGAGGGCCAAGTTAACCAAACTCGAACAATCGTTTCAGTTTTCAGTTTGCCTATGTACTTGATTTGGTTTCGGTTCGCATAGATCATTCACCAATTTAAGTAGTTCAGTTCTAGTGTTTTAAGAAATAACCAAGTCGTTTAACTTCCCTCCTATATTTAGTTAGACCAAAAAAATATTGTAGACATAGTAAAAATTGGCTTCTAGATATAGAAAGACCAGAAGTCTACAACGTTCAACTAAAACCACAATACATGAAACAGTCAATTACACCAAATTGAAGATTTTCCTCAGTTTTTTCTATAATCAGTGTCTCATCCCCTTTTACTTGTATCACTAATTTAGAGCCGTTTAATAACCATTCTCGTTTTTGAATTTTTGTTTTACTATTTCTTATATTTCATGTTTTTTGCTTTCTTTAAGAACTAGAATCAAGAATTTTGAAAGCGTATGAGATTTAAGGAAGAAGATTTGGTTTGAGTCAATCTTCGAAAGAAGGAATTTCCAGATCAATGAGATTTGAAGTTAAACCCAAAAGACGATGGTACTCTTTCCAAGTAATTAAAAAAATCAATGACAATAACTACCGGATTGATTTTAAAGATAAATATGGGTGTGAGTGCTACTTTTAATGTTTATGAGTTAACTCCTTTTGATGCAGATAACGAACTTGATTCTATGACGGATTATTCAAAAGTGGGAGAAGATGATATGAATCAGGATACCCTTGTATTGGAGTCAATTGACGCTACAGGATGCAATCAATTGACATTTGAAATCTCAAGATTTCAAGACTCTTTTACAAGGTTTTGATTTGAATTCAAAGACGAATCCTTCGATAAATAGAAAAATGAAGCATCGAATTATTAATTAGATGTTATTTAATAATTGTGATGTACTTTTAATATTTTTTATTTCGTTCTTTTTAATAACATTTAAGTAGA

mRNA sequence

ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTATAACGAACTTGATTCTATGACGGATTATTCAAAAGTGGGAGAAGATGATATGAATCAGGATACCCTTGTATTGGAGTCAATTGACGCTACAGGATGCAATCAATTGACATTTGAAATCTCAAGATTTCAAGACTCTTTTACAAGGTTTTGA

Coding sequence (CDS)

ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTATAACGAACTTGATTCTATGACGGATTATTCAAAAGTGGGAGAAGATGATATGAATCAGGATACCCTTGTATTGGAGTCAATTGACGCTACAGGATGCAATCAATTGACATTTGAAATCTCAAGATTTCAAGACTCTTTTACAAGGTTTTGA

Protein sequence

MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPYNELDSMTDYSKVGEDDMNQDTLVLESIDATGCNQLTFEISRFQDSFTRF*
Homology
BLAST of CsaV3_4G010300 vs. NCBI nr
Match: KAE8649335.1 (hypothetical protein Csa_014907 [Cucumis sativus])

HSP 1 Score: 336.3 bits (861), Expect = 1.5e-88
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60
           MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60

Query: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPYNELD 120
           RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPYNELD
Sbjct: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPYNELD 120

Query: 121 SMTDYSKVGEDDMNQDTLVLESIDATGCNQLTFEISRFQDSFTRF 166
           SMTDYSKVGEDDMNQDTLVLESIDATGCNQLTFEISRFQDSFTRF
Sbjct: 121 SMTDYSKVGEDDMNQDTLVLESIDATGCNQLTFEISRFQDSFTRF 165

BLAST of CsaV3_4G010300 vs. NCBI nr
Match: KAA0042447.1 (hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK03509.1 hypothetical protein E5676_scaffold121G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 3.8e-47
Identity = 96/115 (83.48%), Postives = 101/115 (87.83%), Query Frame = 0

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60
           MATTFSIPTMAI+IL LLFN   CNTTVNET  EWCYGSENCL+GDES DSEFLMET+TS
Sbjct: 1   MATTFSIPTMAIIILILLFNTIGCNTTVNETAPEWCYGSENCLIGDESSDSEFLMETDTS 60

Query: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 116
           RMLLDFQNLQTP T +PNRQSV ECGRPPRYDSC GE+R I NPENCDVRNR NP
Sbjct: 61  RMLLDFQNLQTPSTNNPNRQSVPECGRPPRYDSCIGEKRSISNPENCDVRNRENP 115

BLAST of CsaV3_4G010300 vs. NCBI nr
Match: KAG7011063.1 (hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.6 bits (366), Expect = 3.8e-31
Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = 0

Query: 1   MATTFSIPTMAILILTLLFN-PTRCNTTVNETTSEWCYGS-ENCLVGDESLDSEFLMETE 60
           MA T   P+M IL + LL N PT  +  +N+T +EWC G  ENCL+GD + DSEFLMETE
Sbjct: 8   MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETE 67

Query: 61  TSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 116
           TSRMLLDF + QTP T +P++QS  EC RPPRYDSC G++  IPNPENCD RNR NP
Sbjct: 68  TSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKTSIPNPENCDTRNRVNP 124

BLAST of CsaV3_4G010300 vs. NCBI nr
Match: KAG6607065.1 (hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-30
Identity = 71/117 (60.68%), Postives = 85/117 (72.65%), Query Frame = 0

Query: 1   MATTFSIPTMAILILTLLFN-PTRCNTTVNETTSEWCYGS-ENCLVGDESLDSEFLMETE 60
           MA T   P+M IL + LL N PT  +  +N+T +EWC G  ENCL+GD + DSEFLMETE
Sbjct: 8   MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETE 67

Query: 61  TSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 116
           TSRMLLDF + QTP T +P++QS  EC RPPRYD C G++  IPNPENCD RNR NP
Sbjct: 68  TSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDGCLGQKNIIPNPENCDTRNRVNP 124

BLAST of CsaV3_4G010300 vs. NCBI nr
Match: KGN53798.1 (hypothetical protein Csa_014747 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-24
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 0

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWC--YGSENCLVGDESLDSEFLMETE 60
           MA T ++P+MA LI  LL NP   N  +N+T S+WC   G ENCLVGD +  SEFLM TE
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68

Query: 61  TSRMLLD-FQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 116
           +S ML+D F   QTP   D N++SV +C RPPRYDSC G +R IPNPE C   NR NP
Sbjct: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNP 126

BLAST of CsaV3_4G010300 vs. ExPASy TrEMBL
Match: A0A0A0KVZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.7e-59
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60
           MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60

Query: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 116
           RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP
Sbjct: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 115

BLAST of CsaV3_4G010300 vs. ExPASy TrEMBL
Match: A0A5D3BZL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001310 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.9e-47
Identity = 96/115 (83.48%), Postives = 101/115 (87.83%), Query Frame = 0

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60
           MATTFSIPTMAI+IL LLFN   CNTTVNET  EWCYGSENCL+GDES DSEFLMET+TS
Sbjct: 1   MATTFSIPTMAIIILILLFNTIGCNTTVNETAPEWCYGSENCLIGDESSDSEFLMETDTS 60

Query: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 116
           RMLLDFQNLQTP T +PNRQSV ECGRPPRYDSC GE+R I NPENCDVRNR NP
Sbjct: 61  RMLLDFQNLQTPSTNNPNRQSVPECGRPPRYDSCIGEKRSISNPENCDVRNRENP 115

BLAST of CsaV3_4G010300 vs. ExPASy TrEMBL
Match: A0A0A0KW62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.8e-25
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 0

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWC--YGSENCLVGDESLDSEFLMETE 60
           MA T ++P+MA LI  LL NP   N  +N+T S+WC   G ENCLVGD +  SEFLM TE
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68

Query: 61  TSRMLLD-FQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 116
           +S ML+D F   QTP   D N++SV +C RPPRYDSC G +R IPNPE C   NR NP
Sbjct: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNP 126

BLAST of CsaV3_4G010300 vs. ExPASy TrEMBL
Match: A0A5D3BS53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002320 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16
Identity = 51/116 (43.97%), Postives = 66/116 (56.90%), Query Frame = 0

Query: 2   ATTFSIPTMAILILTLLFNPTRCN--TTVNETTSEWCYGSENCLVGDESLDSEFLMETET 61
           A+   IP   + ++ LL  P+ C   TT     S      E  +VG+E +D EF+ME+  
Sbjct: 3   ASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMESHI 62

Query: 62  SRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANP 116
           SR+L   QN QT  T+D N+ S   CGRPPRYDSC G++R  P P NC   NRANP
Sbjct: 63  SRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANP 118

BLAST of CsaV3_4G010300 vs. ExPASy TrEMBL
Match: A0A6J1G927 (uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC111452044 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-15
Identity = 55/121 (45.45%), Postives = 68/121 (56.20%), Query Frame = 0

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTV------NETTSEWCYGSENCLVGDESLDSEFL 60
           MA    I   A+ I+ LL NPT  +         N+T++   Y     L+GD+ LDSEFL
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKY-----LIGDQDLDSEFL 60

Query: 61  METETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRAN 116
           ME+  SR+L   QN QT  T D N+ S   CGRPPRYDSC G++   P PENC   NR N
Sbjct: 61  MESHISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNN 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649335.11.5e-88100.00hypothetical protein Csa_014907 [Cucumis sativus][more]
KAA0042447.13.8e-4783.48hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK0350... [more]
KAG7011063.13.8e-3161.54hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607065.11.9e-3060.68hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN53798.11.2e-2455.93hypothetical protein Csa_014747 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KVZ24.7e-59100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1[more]
A0A5D3BZL11.9e-4783.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KW625.8e-2555.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1[more]
A0A5D3BS532.2e-1643.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1G9275.4e-1545.45uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC1114520... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G010300.1CsaV3_4G010300.1mRNA