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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GAACATGCCTTTTTCGACTTTCAGGTATTTCTTGCATATACAATCTTTACTCTTTAGTTCTCTTGTTCTATCGATCTTTCTTTAGCACGAACTATCTCCAACTTCAATAAATAGTATTCGACTTAATCGATGAGATTTTCGCACTTGTTGAACTGCTATTGTCAAGTGGTTGGCCAATTTATTATTACAAACTGAAAATTGTTGTGGATTGGAAAACTTTGTTGTTTTTATAATCATATAATCTCGGTTGGCTTATGCACTGCAACCAGTTTAGAAGTTTTTGACTATAGTATTTATCAGAGACTTTTTTTAACAAAAATTATTACATAGTTAGATATGTTACTGTGAGACAAAGGCAAGACGAGTTTGCATTATGGACGGATACGACAATTGGTGAGCCTCTCAGGTCCTTTCATTTTCTATTTGTTGATTGAAAGCATGTAATGTGGGTGTGTTAGGTTGATAGATGAACTAACTTAATTTATCCCCTGCACCATAAGATATAGAGTATACAAATCCACCTCATATATTTTCTTTGTCTTGAGTGATTTTTGGATCGCTGAAGTTTATGTACTGTTGTGATCAAATAGATAATTCTTTTGTGAATCTCTAGATAATTCTTTTCTTTTTATTTCTTTCTTCCTGCTGCTAGTAGGTTATATGAGATGTTGTTTAGAAGGTTAGCTAATGAGCAGATGTTCTATTTCTAGGAATATCATTCCTTTTTTATTTGTCTCTCTCTTTGTAAAAGGCCACATTTACCCTACAATATTTTGATAGTTGGAAGTTTATGTAGGTTTCTTAGGTCGTTCTGTGTCCATAGTGTTGAACCTTTTGTGTTGACCATTCAGGAAATCTTCAAGGGGAAGATATGGTCTTTTATTATGATTATGTGGTTCTCAGCTCCATCTGAAGTTTTAATTGCTTCTATTGGTCATTTGTCCTCTTGATTACCTAACTGGTTAGACAGTCTTCAGCCTAAGTTCACCACATAGATGATTAGTTTTACTTGGGTTTTAATGAATTGGCAGCAATGATTTAGAAGTCACAAATCTAGTGCCATTATGCATGACAACTTAGTTTACTGGTTCTTTTTTCCAAATTGTAAACACTACTTGAACTCTCTTGTGGAGCAGAGAGAGGATGATTGTTTGGAGATAAAATTTTGAATTGTCTTGAGGAGAGAGAATGATTGGGAGAATCAGAAAAATAAATATAAAAATAATAACTGCAATGTAAATCTTTTAAAATACAATTTAGATACAATTTAAATAAAATATTTCTTGATATTCTAACAGATGGGCCTTTTAGAACTAAAACTACACACTGTTTTGTATTTTCTAAAAGTTAGATTTTTTTTGTTCTTCTAAAATATATATATATCCTCTTTAATATATTTGGTAAGAACATCTTTATCAAGATCTTGTAGTTCCTTATTCTCTCGTTAGAAACTTTTCGAAACTTTCTATAATTTTGGTTTATTTCCTTGATCCTTTTTAGCTTCTTTCATTGTTCTCAACCATTGAATGCACATTTTATCTTTTCCTAAATAAATAACCTTGGGGCGAGAGTTTCTTTTCTGCAATTTTTTTGATAGGAAAGAATCATAAAGACAAGTTTTATAAGTTAAATGGATGAATAAGTAATATCATATTTTGTTGCTCTATCAAATGTCATACACAATGTTTAATCTCCGTGTCAAGAGAAACTTGAGAGTAAGATTTTCTCTGCACTCCTTTTATTTATTACCTTACCTTTATAGATCCTTCATTTAAAGTGAAAATAGGCTCAGATAACATTTCCGGAGGGTAATTGGGCTTTTTCAGATACTTCAAGAGGCTTTGAACTCTCTTGAAACTAGTCCCAAAACTTTTCAACCACAAACCTTAACTAAATCTATTTATAACCACTCGACTATAGCAAATGGACTTTTGTAGTTACAAATATATCACTGTAGTTACGAAATATAATCTAACCTAAGTTCAGTTCAATTCAGTTAGGTAGATATTCCATTAACTCATTTTATACACACAAGCTGTCTCTCAAACCAGTTCATTTAATCCAGAATGTAAACATAAATGTAGATGTGTCTTGTGATTAGTGGACTGTGATGTGTTCTTGATTCTTTTCTTCAATACCCAGTTTGATTTTCAATGTATCTTGCTTTATAGAGTTACATAAGTAGTCATTGTACCAATATTGTGGACACTTTTGAATTTTAGACACAAAGCAGAGAGAAAAAATAATGATAGCTAAATAATGTTCTGGAAGAAGTTCTCTAAAATTGTTAAAGCACAATTAAAGGAAAAACACAAATTTAGAAACAGCAGTAGCAAAGCCTATATGTTGGTTTTGCCTAAAGACATTGCAACCTGTATTGTTTTAAAGGAACTCAAATTTAGAAACATCGCTAGCAAACATCACGAATTCCCAAAATATCTTACTATGAATTATCCTGCACTTGAAAGTCATGGCAATGATGGGCTTGCTTTAGTTGATGAACTTTGTGTTGCAGTTTGCGAGAATATTAACCTTTATATGGAAAAAATGATGAGGAGTTTCAGGGTACTTGAAATGATTTTGCTCTAGTTGTAAGGGGCTTATTGGGGATGTATCTCAGTCATCAAGCCGAGATTAGCTCACTGTTACGATGATGAAGTTTTTTACTACTGTGAGCATGAGTGTACACCACACCTTATTTGCAGGCGAGGGAGTGATAACATAGTAATTCCCAAATGTGAGGTTGAAGGATGATGATGAGGAACTATTTGAAATGAATTATGTTGAATTCATTAGGAGACACATGGAAGGTAGCGATCTGGATATACTAGGAGGAGGATAGCTTGTGAACTTCTTTACAGTTCTTATTCCATGAAATTTCTTTGCAGATTTTATTGATTCATGGTTCACATTTGTTTTTTTTTCCTTTTTTTTTTCTTTTTGCTTTGTGTTTTCTATGCAATTATCTATCTTTTGCTTCTCTGTACCTACAAATGGAGTTAATTTTGATTTTGTATTTGTAGTCGGAACTCAAATCATATCCTTCTCAAGTGGTTGATGGTACACTTGACATGGATGAGGACGAGATCCTTGTGCAAGTTTTTGGACCAGAGAAAGCATGGGTGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTTTTTGAGTGTCATCTTAATGAGTCAGAACAACGTCTTCAAGAATCGGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTTGGATCAGAACATCGTTTTGAGGAGAGATTTAAAATAATTATGGCAGAGATGCGTAAACAATTTGTTATTAATTTGATTGTGTAG mRNA sequence GAACATGCCTTTTTCGACTTTCAGGTATTTCTTGCATATACAATCTTTACTCTTTAGTTCTCTTGTTCTATCGATCTTTCTTTAGCACGAACTATCTCCAACTTCAATAAATAGTATTCGACTTAATCGATGAGATTTTCGCACTTGTTGAACTGCTATTGTCAAGTGGTTGGCCAATTTATTATTACAAACTGAAAATTGTTGTGGATTGGAAAACTTTGTTGTTTTTATAATCATATAATCTCGGTTGGCTTATGCACTGCAACCAGTTTAGAAGTTTTTGACTATAGTATTTATCAGAGACTTTTTTTAACAAAAATTATTACATAGTTAGATATGTTACTGTGAGACAAAGGCAAGACGAGTTTGCATTATGGACGGATACGACAATTGTCGGAACTCAAATCATATCCTTCTCAAGTGGTTGATGGTACACTTGACATGGATGAGGACGAGATCCTTGTGCAAGTTTTTGGACCAGAGAAAGCATGGGTGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTTTTTGAGTGTCATCTTAATGAGTCAGAACAACGTCTTCAAGAATCGGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTTGGATCAGAACATCGTTTTGAGGAGAGATTTAAAATAATTATGGCAGAGATGCGTAAACAATTTGTTATTAATTTGATTGTGTAG Coding sequence (CDS) ATGGACGGATACGACAATTGTCGGAACTCAAATCATATCCTTCTCAAGTGGTTGATGGTACACTTGACATGGATGAGGACGAGATCCTTGTGCAAGTTTTTGGACCAGAGAAAGCATGGGTGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTTTTTGAGTGTCATCTTAATGAGTCAGAACAACGTCTTCAAGAATCGGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTTGGATCAGAACATCGTTTTGAGGAGAGATTTAAAATAATTATGGCAGAGATGCGTAAACAATTTGTTATTAATTTGATTGTGTAG Protein sequence MDGYDNCRNSNHILLKWLMVHLTWMRTRSLCKFLDQRKHGCVRGYGVGVTPSEFFECHLNESEQRLQESERQRKVEVQALKDQIVGSEHRFEERFKIIMAEMRKQFVINLIV
Homology
BLAST of Tan0003393.2 vs. NCBI nr
Match: XP_038904040.1 (uncharacterized protein LOC120090445 [Benincasa hispida]) HSP 1 Score: 78.6 bits (192), Expect = 3.9e-11 Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 0 Query: 38 KHGCVRGYGVGVTPSEFF---------ECHLNESEQRLQESERQRK-------VEVQALK 97 KHG V GYGVGVTPSE F E LNESEQRLQE E+QRK +EV+ LK Sbjct: 95 KHGHVHGYGVGVTPSELFGSSSTIRDHERRLNESEQRLQEFEQQRKEFEQQRELEVEVLK 154
Query: 98 DQIVGSEHRFEERFKIIMAEMRKQFV 108 QI E+RFE+RF+ +MAEM K+FV Sbjct: 155 RQISELENRFEDRFQKMMAEMCKKFV 180
BLAST of Tan0003393.2 vs. NCBI nr
Match: KAE8647951.1 (hypothetical protein Csa_000525 [Cucumis sativus]) HSP 1 Score: 65.1 bits (157), Expect = 4.5e-07 Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0 Query: 59 LNESEQRLQESERQRKVEVQALKDQIVGSEHRFEERFKIIMAEMRKQFV 108 LNE +QRLQ+SERQRKVEVQALK QI+ E+RFE+RFK IM EM K+ V Sbjct: 141 LNEYDQRLQQSERQRKVEVQALKHQIMELENRFEDRFKTIMTEMHKRHV 189
BLAST of Tan0003393.2 vs. NCBI nr
Match: XP_004143706.2 (probable calcium-binding protein CML44 [Cucumis sativus]) HSP 1 Score: 65.1 bits (157), Expect = 4.5e-07 Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0 Query: 59 LNESEQRLQESERQRKVEVQALKDQIVGSEHRFEERFKIIMAEMRKQFV 108 LNE +QRLQ+SERQRKVEVQALK QI+ E+RFE+RFK IM EM K+ V Sbjct: 124 LNEYDQRLQQSERQRKVEVQALKHQIMELENRFEDRFKTIMTEMHKRHV 172
BLAST of Tan0003393.2 vs. ExPASy TrEMBL
Match: A0A0A0KLD7 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G173500 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07 Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0 Query: 59 LNESEQRLQESERQRKVEVQALKDQIVGSEHRFEERFKIIMAEMRKQFV 108 LNE +QRLQ+SERQRKVEVQALK QI+ E+RFE+RFK IM EM K+ V Sbjct: 124 LNEYDQRLQQSERQRKVEVQALKHQIMELENRFEDRFKTIMTEMHKRHV 172
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_038904040.1 | 3.9e-11 | 56.98 | uncharacterized protein LOC120090445 [Benincasa hispida] | [more] |
KAE8647951.1 | 4.5e-07 | 71.43 | hypothetical protein Csa_000525 [Cucumis sativus] | [more] |
XP_004143706.2 | 4.5e-07 | 71.43 | probable calcium-binding protein CML44 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KLD7 | 2.2e-07 | 71.43 | EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G173500 PE=... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 52..79 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
Tan0003393 | Tan0003393 | gene |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Tan0003393.2-five_prime_utr | Tan0003393.2-five_prime_utr-LG10:36253028..36253400 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Tan0003393.2-exon | Tan0003393.2-exon-LG10:36253028..36253420 | exon |
Tan0003393.2-exon | Tan0003393.2-exon-LG10:36256051..36256369 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Tan0003393.2-cds | Tan0003393.2-cds-LG10:36253401..36253420 | CDS |
Tan0003393.2-cds | Tan0003393.2-cds-LG10:36256051..36256369 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Tan0003393.2 | Tan0003393.2-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005509 |
calcium ion binding |
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