Tan0003393 (gene) Snake gourd v1

Overview


Name	Tan0003393
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	EF-hand domain-containing protein
Location	LG10: 36252564 .. 36256511 (+)
RNA-Seq Expression	Tan0003393
Synteny	Tan0003393

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGATTTTAAAACCCGTCGGTTAAACTTTAATCCTCGTTCTCCCCTTCCATTTCGTTTTTCCCTCCCTAGCCCTAGTCATGGATGTTTTATCCTTCTTCTCCCGTTGCCAATCACGTCGCCCACATCCTCCTCCGTCTGTTGCGATTGCCTCCCCTAATTCTCGTACATCTTCTTCTTCTTCTTCTTCTTTTCTGACGGGGAACTATGCAAATCCAATCAAATCAAATGGACAAAATTCATTCAATCAATGATTTCTCTAATCTTTTTCAACATCCAGATAAGGAAGAGTACACCCCCTCTCTTTCAATTTCTCATGTGTTCATCCGCTCTAATTCTGATTACTTTCTCTTCTTTGTTGCAGTATAATGAAATCCTCGACAAAGGAGTTTCCAATACACAGTACGAACAAATTTAGCCTCTCCTTCGTCTCCTTTGCATTTTTGTAATTAGCATCGATTCTATCGAACATGCCTTTTTCGACTTTCAGGTATTTCTTGCATATACAATCTTTACTCTTTAGTTCTCTTGTTCTATCGATCTTTCTTTAGCACGAACTATCTCCAACTTCAATAAATAGTATTCGACTTAATCGATGAGATTTTCGCACTTGTTGAACTGCTATTGTCAAGTGGTTGGCCAATTTATTATTACAAACTGAAAATTGTTGTGGATTGGAAAACTTTGTTGTTTTTATAATCATATAATCTCGGTTGGCTTATGCACTGCAACCAGTTTAGAAGTTTTTGACTATAGTATTTATCAGAGACTTTTTTTAACAAAAATTATTACATAGTTAGATATGTTACTGTGAGACAAAGGCAAGACGAGTTTGCATTATGGACGGATACGACAATTGGTGAGCCTCTCAGGTCCTTTCATTTTCTATTTGTTGATTGAAAGCATGTAATGTGGGTGTGTTAGGTTGATAGATGAACTAACTTAATTTATCCCCTGCACCATAAGATATAGAGTATACAAATCCACCTCATATATTTTCTTTGTCTTGAGTGATTTTTGGATCGCTGAAGTTTATGTACTGTTGTGATCAAATAGATAATTCTTTTGTGAATCTCTAGATAATTCTTTTCTTTTTATTTCTTTCTTCCTGCTGCTAGTAGGTTATATGAGATGTTGTTTAGAAGGTTAGCTAATGAGCAGATGTTCTATTTCTAGGAATATCATTCCTTTTTTATTTGTCTCTCTCTTTGTAAAAGGCCACATTTACCCTACAATATTTTGATAGTTGGAAGTTTATGTAGGTTTCTTAGGTCGTTCTGTGTCCATAGTGTTGAACCTTTTGTGTTGACCATTCAGGAAATCTTCAAGGGGAAGATATGGTCTTTTATTATGATTATGTGGTTCTCAGCTCCATCTGAAGTTTTAATTGCTTCTATTGGTCATTTGTCCTCTTGATTACCTAACTGGTTAGACAGTCTTCAGCCTAAGTTCACCACATAGATGATTAGTTTTACTTGGGTTTTAATGAATTGGCAGCAATGATTTAGAAGTCACAAATCTAGTGCCATTATGCATGACAACTTAGTTTACTGGTTCTTTTTTCCAAATTGTAAACACTACTTGAACTCTCTTGTGGAGCAGAGAGAGGATGATTGTTTGGAGATAAAATTTTGAATTGTCTTGAGGAGAGAGAATGATTGGGAGAATCAGAAAAATAAATATAAAAATAATAACTGCAATGTAAATCTTTTAAAATACAATTTAGATACAATTTAAATAAAATATTTCTTGATATTCTAACAGATGGGCCTTTTAGAACTAAAACTACACACTGTTTTGTATTTTCTAAAAGTTAGATTTTTTTTGTTCTTCTAAAATATATATATATCCTCTTTAATATATTTGGTAAGAACATCTTTATCAAGATCTTGTAGTTCCTTATTCTCTCGTTAGAAACTTTTCGAAACTTTCTATAATTTTGGTTTATTTCCTTGATCCTTTTTAGCTTCTTTCATTGTTCTCAACCATTGAATGCACATTTTATCTTTTCCTAAATAAATAACCTTGGGGCGAGAGTTTCTTTTCTGCAATTTTTTTGATAGGAAAGAATCATAAAGACAAGTTTTATAAGTTAAATGGATGAATAAGTAATATCATATTTTGTTGCTCTATCAAATGTCATACACAATGTTTAATCTCCGTGTCAAGAGAAACTTGAGAGTAAGATTTTCTCTGCACTCCTTTTATTTATTACCTTACCTTTATAGATCCTTCATTTAAAGTGAAAATAGGCTCAGATAACATTTCCGGAGGGTAATTGGGCTTTTTCAGATACTTCAAGAGGCTTTGAACTCTCTTGAAACTAGTCCCAAAACTTTTCAACCACAAACCTTAACTAAATCTATTTATAACCACTCGACTATAGCAAATGGACTTTTGTAGTTACAAATATATCACTGTAGTTACGAAATATAATCTAACCTAAGTTCAGTTCAATTCAGTTAGGTAGATATTCCATTAACTCATTTTATACACACAAGCTGTCTCTCAAACCAGTTCATTTAATCCAGAATGTAAACATAAATGTAGATGTGTCTTGTGATTAGTGGACTGTGATGTGTTCTTGATTCTTTTCTTCAATACCCAGTTTGATTTTCAATGTATCTTGCTTTATAGAGTTACATAAGTAGTCATTGTACCAATATTGTGGACACTTTTGAATTTTAGACACAAAGCAGAGAGAAAAAATAATGATAGCTAAATAATGTTCTGGAAGAAGTTCTCTAAAATTGTTAAAGCACAATTAAAGGAAAAACACAAATTTAGAAACAGCAGTAGCAAAGCCTATATGTTGGTTTTGCCTAAAGACATTGCAACCTGTATTGTTTTAAAGGAACTCAAATTTAGAAACATCGCTAGCAAACATCACGAATTCCCAAAATATCTTACTATGAATTATCCTGCACTTGAAAGTCATGGCAATGATGGGCTTGCTTTAGTTGATGAACTTTGTGTTGCAGTTTGCGAGAATATTAACCTTTATATGGAAAAAATGATGAGGAGTTTCAGGGTACTTGAAATGATTTTGCTCTAGTTGTAAGGGGCTTATTGGGGATGTATCTCAGTCATCAAGCCGAGATTAGCTCACTGTTACGATGATGAAGTTTTTTACTACTGTGAGCATGAGTGTACACCACACCTTATTTGCAGGCGAGGGAGTGATAACATAGTAATTCCCAAATGTGAGGTTGAAGGATGATGATGAGGAACTATTTGAAATGAATTATGTTGAATTCATTAGGAGACACATGGAAGGTAGCGATCTGGATATACTAGGAGGAGGATAGCTTGTGAACTTCTTTACAGTTCTTATTCCATGAAATTTCTTTGCAGATTTTATTGATTCATGGTTCACATTTGTTTTTTTTTCCTTTTTTTTTTCTTTTTGCTTTGTGTTTTCTATGCAATTATCTATCTTTTGCTTCTCTGTACCTACAAATGGAGTTAATTTTGATTTTGTATTTGTAGTCGGAACTCAAATCATATCCTTCTCAAGTGGTTGATGGTACACTTGACATGGATGAGGACGAGATCCTTGTGCAAGTTTTTGGACCAGAGAAAGCATGGGTGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTTTTTGAGTGTCATCTTAATGAGTCAGAACAACGTCTTCAAGAATCGGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTTGGATCAGAACATCGTTTTGAGGAGAGATTTAAAATAATTATGGCAGAGATGCGTAAACAATTTGTTATTAATTTGATTGTGTAGTAGTTAAATGTTCTACAACTTTTGTCATTATTTTGTCTATATAAATAATTTATGAGATCATGTCAAAATTATTAGCTACTTTAAGACATTTATGTTTACATTGATCTTAAACCGCTTTAATAGAAGTTACTATTTCTTTATC

mRNA sequence

TGGATTTTAAAACCCGTCGGTTAAACTTTAATCCTCGTTCTCCCCTTCCATTTCGTTTTTCCCTCCCTAGCCCTAGTCATGGATGTTTTATCCTTCTTCTCCCGTTGCCAATCACGTCGCCCACATCCTCCTCCGTCTGTTGCGATTGCCTCCCCTAATTCTCGTACATCTTCTTCTTCTTCTTCTTCTTTTCTGACGGGGAACTATGCAAATCCAATCAAATCAAATGGACAAAATTCATTCAATCAATGATTTCTCTAATCTTTTTCAACATCCAGATAAGGAAGAGTACACCCCCTCTCTTTCAATTTCTCATGTGTTCATCCGCTCTAATTCTGATTACTTTCTCTTCTTTGTTGCAGTATAATGAAATCCTCGACAAAGGAGTTTCCAATACACAGTACGAACAAATTTAGCCTCTCCTTCGTCTCCTTTGCATTTTTGTAATTAGCATCGATTCTATCGAACATGCCTTTTTCGACTTTCAGTCGGAACTCAAATCATATCCTTCTCAAGTGGTTGATGGTACACTTGACATGGATGAGGACGAGATCCTTGTGCAAGTTTTTGGACCAGAGAAAGCATGGGTGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTTTTTGAGTGTCATCTTAATGAGTCAGAACAACGTCTTCAAGAATCGGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTTGGATCAGAACATCGTTTTGAGGAGAGATTTAAAATAATTATGGCAGAGATGCGTAAACAATTTGTTATTAATTTGATTGTGTAGTAGTTAAATGTTCTACAACTTTTGTCATTATTTTGTCTATATAAATAATTTATGAGATCATGTCAAAATTATTAGCTACTTTAAGACATTTATGTTTACATTGATCTTAAACCGCTTTAATAGAAGTTACTATTTCTTTATC

Coding sequence (CDS)

ATGCCTTTTTCGACTTTCAGTCGGAACTCAAATCATATCCTTCTCAAGTGGTTGATGGTACACTTGACATGGATGAGGACGAGATCCTTGTGCAAGTTTTTGGACCAGAGAAAGCATGGGTGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTTTTTGAGTGTCATCTTAATGAGTCAGAACAACGTCTTCAAGAATCGGAACGACAAAGAAAAGTCGAGGTACAAGCACTCAAAGATCAAATTGTTGGATCAGAACATCGTTTTGAGGAGAGATTTAAAATAATTATGGCAGAGATGCGTAAACAATTTGTTATTAATTTGATTGTGTAG

Protein sequence

MPFSTFSRNSNHILLKWLMVHLTWMRTRSLCKFLDQRKHGCVRGYGVGVTPSEFFECHLNESEQRLQESERQRKVEVQALKDQIVGSEHRFEERFKIIMAEMRKQFVINLIV

Homology

[Close]

BLAST of Tan0003393 vs. NCBI nr
Match: XP_038904040.1 (uncharacterized protein LOC120090445 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-11
Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 38  KHGCVRGYGVGVTPSEFF---------ECHLNESEQRLQESERQRK-------VEVQALK 97
           KHG V GYGVGVTPSE F         E  LNESEQRLQE E+QRK       +EV+ LK
Sbjct: 95  KHGHVHGYGVGVTPSELFGSSSTIRDHERRLNESEQRLQEFEQQRKEFEQQRELEVEVLK 154

Query: 98  DQIVGSEHRFEERFKIIMAEMRKQFV 108
            QI   E+RFE+RF+ +MAEM K+FV
Sbjct: 155 RQISELENRFEDRFQKMMAEMCKKFV 180

[Close]

BLAST of Tan0003393 vs. NCBI nr
Match: KAE8647951.1 (hypothetical protein Csa_000525 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-07
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 59  LNESEQRLQESERQRKVEVQALKDQIVGSEHRFEERFKIIMAEMRKQFV 108
           LNE +QRLQ+SERQRKVEVQALK QI+  E+RFE+RFK IM EM K+ V
Sbjct: 141 LNEYDQRLQQSERQRKVEVQALKHQIMELENRFEDRFKTIMTEMHKRHV 189

[Close]

BLAST of Tan0003393 vs. NCBI nr
Match: XP_004143706.2 (probable calcium-binding protein CML44 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-07
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 59  LNESEQRLQESERQRKVEVQALKDQIVGSEHRFEERFKIIMAEMRKQFV 108
           LNE +QRLQ+SERQRKVEVQALK QI+  E+RFE+RFK IM EM K+ V
Sbjct: 124 LNEYDQRLQQSERQRKVEVQALKHQIMELENRFEDRFKTIMTEMHKRHV 172

[Close]

BLAST of Tan0003393 vs. ExPASy TrEMBL
Match: A0A0A0KLD7 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G173500 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 59  LNESEQRLQESERQRKVEVQALKDQIVGSEHRFEERFKIIMAEMRKQFV 108
           LNE +QRLQ+SERQRKVEVQALK QI+  E+RFE+RFK IM EM K+ V
Sbjct: 124 LNEYDQRLQQSERQRKVEVQALKHQIMELENRFEDRFKTIMTEMHKRHV 172

The following BLAST results are available for this feature:

BLAST of Tan0003393 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003393 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904040.1	3.9e-11	56.98	uncharacterized protein LOC120090445 [Benincasa hispida]	[more]
KAE8647951.1	4.5e-07	71.43	hypothetical protein Csa_000525 [Cucumis sativus]	[more]
XP_004143706.2	4.5e-07	71.43	probable calcium-binding protein CML44 [Cucumis sativus]	[more]

BLAST of Tan0003393 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLD7	2.2e-07	71.43	EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G173500 PE=...	[more]

BLAST of Tan0003393 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003393.1	Tan0003393.1	mRNA
Tan0003393.2	Tan0003393.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding